Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00957 Brassica carinata HOM05D003546 ORTHO05D014122 5.8e-39 163.7 79 100.0
BraA01t02562Z Brassica rapa HOM05D003546 ORTHO05D014122 4.0e-24 114.4 86 68.6
A01p26360 Brassica napus HOM05D003546 ORTHO05D014122 4.4e-23 110.9 86 67.4
BolC8t52242H Brassica oleracea HOM05D003546 ORTHO05D014122 5.8e-23 110.5 86 67.4
C01p42230 Brassica napus HOM05D003546 ORTHO05D014122 1.3e-22 109.4 64 79.7
A08p37500 Brassica napus HOM05D003546 ORTHO05D014122 2.2e-22 108.6 86 66.3
BcaC02g08580 Brassica carinata HOM05D003546 ORTHO05D014122 1.2e-20 102.8 86 65.1
C05p52660 Brassica napus HOM05D003546 ORTHO05D014122 1.2e-20 102.8 86 65.1
BolC4t26808H Brassica oleracea HOM05D003546 ORTHO05D014122 1.2e-20 102.8 86 65.1
C04p52320 Brassica napus HOM05D003546 ORTHO05D014122 2.7e-20 101.7 86 64.0
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 4.9e-14 80.9 49 81.6
C02p16530 Brassica napus HOM05D003546 ORTHO05D005667 4.9e-14 80.9 68 67.6
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 6.4e-14 80.5 49 79.6
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 6.4e-14 80.5 49 79.6
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 6.4e-14 80.5 49 79.6
BcaC02g08582 Brassica carinata HOM05D003546 ORTHO05D014122 8.4e-14 80.1 48 85.4
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 1.1e-13 79.7 49 81.6
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 1.4e-13 79.3 49 79.6
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 3.2e-13 78.2 49 77.6
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 5.4e-13 77.4 49 77.6
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 7.1e-13 77.0 49 79.6
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 9.3e-13 76.6 49 75.5
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 9.3e-13 76.6 49 77.6
BcaC02g08004 Brassica carinata HOM05D003546 ORTHO05D027045 1.6e-12 75.9 85 50.6
BcaC03g14253 Brassica carinata HOM05D003546 ORTHO05D005667 2.1e-12 75.5 49 79.6
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 1.0e-11 73.2 49 73.5
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 1.3e-11 72.8 49 69.4
BcaB05g23518 Brassica carinata HOM05D003546 ORTHO05D014122 1.3e-11 72.8 86 52.3
A09p60550 Brassica napus HOM05D003546 ORTHO05D005667 2.3e-11 72.0 49 69.4
BraA09t41425Z Brassica rapa HOM05D003546 ORTHO05D005667 2.3e-11 72.0 49 69.4
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 3.0e-11 71.6 49 71.4
BcaC03g14396 Brassica carinata HOM05D003546 ORTHO05D005667 5.1e-11 70.9 63 61.9
BolC2t07938H Brassica oleracea HOM05D003546 ORTHO05D005667 5.1e-11 70.9 63 61.9
C01p09430 Brassica napus HOM05D063129 ORTHO05D041175 1.1e-10 69.7 67 58.2
C02p18050 Brassica napus HOM05D003546 ORTHO05D005667 1.1e-10 69.7 63 60.3
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 1.1e-10 69.7 78 50.0
BolC1t00931H Brassica oleracea HOM05D063129 ORTHO05D041175 1.9e-10 68.9 65 58.5
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 7.4e-10 67.0 49 65.3
BcaC08g43888 Brassica carinata HOM05D003546 ORTHO05D031910 9.6e-10 66.6 38 89.5
C03p78600 Brassica napus HOM05D003546 ORTHO05D005667 9.6e-10 66.6 80 53.8
C06p12730 Brassica napus HOM05D003546 ORTHO05D031910 9.6e-10 66.6 38 89.5
BolC6t36430H Brassica oleracea HOM05D003546 ORTHO05D031910 9.6e-10 66.6 38 89.5
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 9.6e-10 66.6 65 53.8
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 1.3e-09 66.2 49 61.2
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 1.3e-09 66.2 63 55.6
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 1.6e-09 65.9 65 52.3
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 2.8e-09 65.1 78 47.4
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 2.8e-09 65.1 78 46.2
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 2.8e-09 65.1 78 46.2
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 3.7e-09 64.7 62 54.8
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 3.7e-09 64.7 65 50.8
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 3.7e-09 64.7 78 46.2
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 3.7e-09 64.7 78 46.2
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 3.7e-09 64.7 78 44.9
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 3.7e-09 64.7 62 54.8
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 3.7e-09 64.7 65 49.2
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 4.8e-09 64.3 63 54.0
C02p16330 Brassica napus HOM05D003546 ORTHO05D005667 6.2e-09 63.9 53 67.9
BolC2t07734H Brassica oleracea HOM05D003546 ORTHO05D005667 8.1e-09 63.5 60 61.7
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 8.1e-09 63.5 49 61.2
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 8.1e-09 63.5 49 63.3
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 8.1e-09 63.5 65 47.7
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 8.1e-09 63.5 65 47.7
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 8.1e-09 63.5 65 47.7
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 8.1e-09 63.5 64 54.7
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 8.1e-09 63.5 49 61.2
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 8.1e-09 63.5 49 63.3
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 1.1e-08 63.2 62 53.2
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 1.1e-08 63.2 78 48.7
BcaC09g49138 Brassica carinata HOM05D003546 ORTHO05D014122 1.4e-08 62.8 41 73.2
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 1.4e-08 62.8 65 44.6
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 1.4e-08 62.8 65 49.2
BcaC01g00338 Brassica carinata HOM05D003546 ORTHO05D005667 1.8e-08 62.4 80 51.2
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 1.8e-08 62.4 48 58.3
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 1.8e-08 62.4 49 61.2
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 1.8e-08 62.4 66 54.5
SHI19235 Sapria himalayana HOM05D003546 ORTHO05D005667 1.8e-08 62.4 47 61.7
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 3.1e-08 61.6 49 61.2
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 4.0e-08 61.2 49 57.1
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 4.0e-08 61.2 65 49.2
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 5.3e-08 60.8 65 47.7
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 5.3e-08 60.8 65 47.7
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 5.3e-08 60.8 49 57.1
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 5.3e-08 60.8 49 59.2
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 5.3e-08 60.8 65 49.2
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 5.3e-08 60.8 65 46.2
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 5.3e-08 60.8 65 46.2
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 5.3e-08 60.8 65 46.2
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 6.9e-08 60.5 65 47.7
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 6.9e-08 60.5 49 59.2
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 6.9e-08 60.5 65 47.7
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 9.0e-08 60.1 64 48.4
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 9.0e-08 60.1 62 50.0
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 9.0e-08 60.1 64 50.0
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 1.2e-07 59.7 46 56.5
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 1.2e-07 59.7 65 47.7
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 1.2e-07 59.7 65 47.7
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 1.2e-07 59.7 49 57.1
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.5e-07 59.3 65 46.2
A05p16200 Brassica napus HOM05D055649 ORTHO05D101691 1.5e-07 59.3 41 78.0
A09p25380 Brassica napus HOM05D055649 ORTHO05D097052 1.5e-07 59.3 41 78.0
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.5e-07 59.3 65 46.2
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 1.5e-07 59.3 49 57.1
GSVIVG01014076001 Vitis vinifera HOM05D003546 ORTHO05D005667 1.5e-07 59.3 49 57.1
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 2.0e-07 58.9 49 55.1
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 2.0e-07 58.9 68 48.5
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 2.0e-07 58.9 49 55.1
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 2.0e-07 58.9 80 42.5
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 2.6e-07 58.5 49 55.1
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 2.6e-07 58.5 49 61.2
BcaB08g35084 Brassica carinata HOM05D003546 ORTHO05D005667 3.4e-07 58.2 40 80.0
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 3.4e-07 58.2 48 56.2
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 3.4e-07 58.2 65 43.1
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 3.4e-07 58.2 49 57.1
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 3.4e-07 58.2 49 57.1
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 3.4e-07 58.2 65 44.6
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 4.5e-07 57.8 49 55.1
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 4.5e-07 57.8 62 46.8
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 4.5e-07 57.8 49 53.1
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 5.8e-07 57.4 65 43.1
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 7.6e-07 57.0 61 49.2
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 7.6e-07 57.0 65 46.2
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 7.6e-07 57.0 49 55.1
C08p08990 Brassica napus HOM05D003546 ORTHO05D040745 9.9e-07 56.6 36 80.6
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 1.3e-06 56.2 65 47.7
Cc05_g10570 Coffea canephora HOM05D003546 ORTHO05D005667 2.2e-06 55.5 49 55.1
BolC8t47744H Brassica oleracea HOM05D003546 ORTHO05D040745 2.9e-06 55.1 36 77.8
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 3.8e-06 54.7 65 40.0
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 3.8e-06 54.7 58 51.7
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 3.8e-06 54.7 49 57.1
Dinv13351 Davidia involucrata HOM05D003546 ORTHO05D005667 4.9e-06 54.3 37 64.9
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 4.9e-06 54.3 62 45.2
BcaB01g02368 Brassica carinata HOM05D047160 ORTHO05D096100 8.4e-06 53.5 35 80.0
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 8.4e-06 53.5 38 63.2


User provided reference genes

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