Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 7.2e-120 434.1 247 100.0
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 5.4e-67 258.5 262 58.4
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 6.4e-60 235.0 252 56.7
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.2e-58 230.7 263 54.8
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 3.6e-55 219.2 267 52.4
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.4e-54 217.2 264 51.9
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.8e-54 216.9 261 56.7
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 5.2e-54 215.3 278 53.2
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 1.2e-53 214.2 261 54.4
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 1.2e-53 214.2 277 48.7
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 2.2e-52 209.9 264 49.2
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 2.2e-52 209.9 263 51.7
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 6.4e-52 208.4 262 51.5
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 1.1e-51 207.6 263 49.4
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 3.2e-51 206.1 259 51.4
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 3.2e-51 206.1 264 50.8
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 4.1e-51 205.7 264 50.4
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 5.4e-51 205.3 261 51.0
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 7.1e-51 204.9 264 51.9
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.2e-50 204.1 268 50.4
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 1.6e-50 203.8 246 50.0
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 3.5e-50 202.6 261 50.2
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 6.0e-50 201.8 266 50.4
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 7.8e-50 201.4 263 52.5
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 3.9e-49 199.1 262 49.6
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 3.9e-49 199.1 262 49.6
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 3.9e-49 199.1 262 50.0
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 1.1e-48 197.6 265 48.3
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.1e-48 197.6 266 49.2
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 2.5e-48 196.4 265 48.3
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.5e-48 196.4 262 49.2
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 5.6e-48 195.3 260 49.2
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 1.2e-47 194.1 264 49.2
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 1.6e-47 193.7 264 50.8
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 2.1e-47 193.4 262 49.2
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 2.8e-47 193.0 277 46.6
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 4.7e-47 192.2 252 48.0
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 4.7e-47 192.2 243 49.0
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 6.2e-47 191.8 281 48.4
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-46 190.7 261 48.7
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 1.4e-46 190.7 209 57.9
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 4.0e-46 189.1 265 49.8
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 4.0e-46 189.1 265 49.8
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 4.0e-46 189.1 278 46.8
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 1.5e-45 187.2 253 52.2
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 2.0e-45 186.8 264 47.3
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 2.6e-45 186.4 261 50.6
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 2.6e-45 186.4 264 46.6
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 5.8e-45 185.3 235 52.3
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 7.6e-45 184.9 245 49.8
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 9.9e-45 184.5 276 47.5
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 2.2e-44 183.3 265 49.1
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 2.9e-44 183.0 265 49.4
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 6.4e-44 181.8 265 49.1
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 6.4e-44 181.8 265 49.1
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 1.1e-43 181.0 262 47.3
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 3.2e-43 179.5 259 45.9
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 3.2e-43 179.5 265 48.7
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 4.2e-43 179.1 266 44.4
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 5.4e-43 178.7 261 49.4
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 7.1e-43 178.3 264 49.2
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 7.1e-43 178.3 262 46.2
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.2e-42 177.6 261 46.0
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 4.6e-42 175.6 261 45.2
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 4.6e-42 175.6 269 46.1
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 7.8e-42 174.9 248 48.4
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.3e-41 174.1 276 48.6
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.3e-41 174.1 260 45.4
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 2.3e-41 173.3 256 48.4
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 6.6e-41 171.8 206 52.9
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 8.7e-41 171.4 269 45.0
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 1.5e-40 170.6 261 49.0
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 2.5e-40 169.9 230 48.3
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 3.3e-40 169.5 206 52.4
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 3.3e-40 169.5 259 44.4
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 2.8e-39 166.4 276 42.0
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.4e-38 163.3 281 45.6
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 2.4e-38 163.3 280 45.7
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 6.9e-38 161.8 226 47.3
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 9.0e-38 161.4 249 45.4
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 9.0e-38 161.4 249 45.4
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 1.5e-37 160.6 169 53.3
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 3.4e-37 159.5 274 46.0
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 4.4e-37 159.1 272 39.0
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 5.8e-37 158.7 284 41.9
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 9.9e-37 157.9 147 60.5
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.3e-36 157.5 267 42.7
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.7e-36 157.1 146 59.6
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 2.2e-36 156.8 266 41.7
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 1.1e-35 154.5 150 58.7
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 1.9e-35 153.7 212 48.1
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 1.9e-35 153.7 144 57.6
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 3.2e-35 152.9 215 50.2
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 1.2e-34 151.0 264 42.4
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 1.2e-34 151.0 274 42.0
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 1.0e-33 147.9 272 43.0
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 2.3e-33 146.7 205 47.3
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 8.7e-33 144.8 275 44.4
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.5e-32 144.1 280 41.8
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 5.6e-32 142.1 276 40.9
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 7.3e-32 141.7 277 38.6
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 1.6e-31 140.6 273 39.2
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.8e-31 139.8 236 41.9
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.8e-31 139.8 280 41.8
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 4.8e-31 139.0 263 40.3
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 6.2e-31 138.7 272 37.9
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.1e-30 137.9 246 43.5
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 3.1e-30 136.3 123 61.8
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 6.9e-30 135.2 279 38.0
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 9.0e-30 134.8 244 41.8
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 1.5e-29 134.0 254 41.7
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 2.0e-29 133.7 253 41.5
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 2.6e-29 133.3 266 39.5
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 4.5e-29 132.5 263 38.8
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 2.9e-28 129.8 118 57.6
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.9e-27 127.1 282 39.7
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 1.0e-25 121.3 266 39.1
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 5.6e-24 115.5 142 51.4
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 9.6e-24 114.8 239 36.8
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 4.0e-22 109.4 259 36.3
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 6.5e-20 102.1 213 32.9
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.9e-19 100.5 82 65.9
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 5.5e-19 99.0 205 34.6
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.6e-18 97.4 202 35.6
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 1.3e-17 94.4 97 54.6
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.5e-16 90.9 173 35.8
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 2.4e-14 83.6 195 32.8
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 6.5e-12 75.5 180 32.8
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 2.3e-09 67.0 80 47.5
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.8e-06 57.4 209 29.2
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 6.9e-06 55.5 117 32.5


User provided reference genes

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