Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 6.6e-51 203.8 103 100.0
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 4.4e-31 137.9 89 77.5
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 1.3e-22 109.8 103 55.3
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 2.9e-22 108.6 98 56.1
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.4e-21 106.3 98 57.1
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 3.2e-21 105.1 89 65.2
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 7.1e-21 104.0 89 62.9
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 6.0e-20 100.9 98 56.1
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 6.0e-20 100.9 95 56.8
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 7.8e-20 100.5 99 55.6
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 1.0e-19 100.1 103 51.5
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 1.0e-19 100.1 98 55.1
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 2.3e-19 99.0 103 55.3
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 3.0e-19 98.6 94 55.3
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 3.0e-19 98.6 93 58.1
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 3.9e-19 98.2 104 53.8
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 8.7e-19 97.1 99 55.6
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 8.7e-19 97.1 98 55.1
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 8.7e-19 97.1 91 53.8
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 1.1e-18 96.7 101 52.5
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 1.1e-18 96.7 99 54.5
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 1.5e-18 96.3 100 54.0
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 3.3e-18 95.1 101 50.5
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 2.1e-17 92.4 88 52.3
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 4.8e-17 91.3 80 56.2
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 1.1e-16 90.1 94 52.1
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 1.1e-16 90.1 88 52.3
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 1.1e-16 90.1 88 52.3
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 1.4e-16 89.7 99 52.5
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 9.0e-16 87.0 98 48.0
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 9.0e-16 87.0 91 54.9
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 9.0e-16 87.0 99 47.5
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 9.0e-16 87.0 99 47.5
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 1.5e-15 86.3 99 43.4
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 3.4e-15 85.1 99 47.5
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 4.4e-15 84.7 88 50.0
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 5.8e-15 84.3 92 50.0
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 1.3e-14 83.2 99 45.5
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 1.7e-14 82.8 86 51.2
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 2.9e-14 82.0 80 56.2
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 2.9e-14 82.0 80 56.2
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 4.9e-14 81.3 85 51.8
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 6.4e-14 80.9 90 50.0
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 8.4e-14 80.5 82 54.9
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 3.2e-13 78.6 96 45.8
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 3.2e-13 78.6 85 49.4
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 1.2e-12 76.6 90 48.9
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 1.2e-12 76.6 92 45.7
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 1.2e-12 76.6 95 43.2
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 3.5e-12 75.1 87 49.4
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 4.6e-12 74.7 83 48.2
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 1.0e-11 73.6 97 46.4
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 1.3e-11 73.2 80 50.0
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 1.7e-11 72.8 84 46.4
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 3.9e-11 71.6 100 43.0
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 6.6e-11 70.9 84 44.0
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 6.6e-11 70.9 87 43.7
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 8.7e-11 70.5 86 45.3
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 1.1e-10 70.1 81 44.4
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 2.5e-10 68.9 80 46.2
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 2.5e-10 68.9 94 40.4
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 4.3e-10 68.2 89 44.9
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 5.6e-10 67.8 86 43.0
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 5.6e-10 67.8 86 44.2
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 7.3e-10 67.4 102 37.3
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 7.3e-10 67.4 102 37.3
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 9.6e-10 67.0 77 44.2
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 9.6e-10 67.0 84 42.9
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.3e-09 66.6 80 46.2
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 2.1e-09 65.9 80 40.0
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 2.1e-09 65.9 80 40.0
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 2.1e-09 65.9 80 40.0
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 3.6e-09 65.1 66 54.5
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 1.1e-08 63.5 80 40.0
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 1.1e-08 63.5 102 33.3
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 1.4e-08 63.2 102 33.3
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 1.4e-08 63.2 102 33.3
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 2.4e-08 62.4 102 36.3
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 5.3e-08 61.2 80 38.8
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 1.5e-07 59.7 80 43.8
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.5e-07 59.7 71 46.5
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 3.4e-07 58.5 80 38.8
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 3.4e-07 58.5 80 36.2
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 4.5e-07 58.2 80 37.5
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 9.9e-07 57.0 80 35.0
TAR626G1168 Trochodendron aralioides HOM05D008139 ORTHO05D009872 9.9e-07 57.0 90 40.0
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 2.2e-06 55.8 80 36.2


User provided reference genes

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