Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 3.5e-36 154.5 78 100.0
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 5.4e-13 77.4 51 76.5
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 5.0e-11 70.9 65 61.5
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 1.1e-10 69.7 75 52.0
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 1.6e-09 65.9 69 56.5
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 4.7e-09 64.3 51 64.7
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 6.2e-09 63.9 59 57.6
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 6.2e-09 63.9 59 62.7
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 6.2e-09 63.9 59 54.2
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 8.0e-09 63.5 59 55.9
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.0e-08 63.2 73 49.3
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.0e-08 63.2 56 60.7
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 1.8e-08 62.4 65 58.5
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 1.8e-08 62.4 73 47.9
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 2.3e-08 62.0 73 57.5
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 2.3e-08 62.0 62 59.7
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 2.3e-08 62.0 73 47.9
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 2.3e-08 62.0 59 54.2
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 2.3e-08 62.0 73 52.1
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 4.0e-08 61.2 53 60.4
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 4.0e-08 61.2 76 50.0
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 4.0e-08 61.2 59 57.6
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 5.2e-08 60.8 65 53.8
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 5.2e-08 60.8 56 64.3
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 5.2e-08 60.8 61 57.4
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 6.8e-08 60.5 54 59.3
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 6.8e-08 60.5 59 52.5
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 8.9e-08 60.1 48 66.7
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 8.9e-08 60.1 61 52.5
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 8.9e-08 60.1 46 67.4
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.2e-07 59.7 55 58.2
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.2e-07 59.7 57 57.9
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 1.5e-07 59.3 77 48.1
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.5e-07 59.3 65 56.9
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.5e-07 59.3 53 56.6
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 2.0e-07 58.9 69 47.8
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 3.4e-07 58.2 47 63.8
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 4.4e-07 57.8 55 52.7
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 4.4e-07 57.8 55 56.4
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 4.4e-07 57.8 77 49.4
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 5.8e-07 57.4 65 55.4
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 5.8e-07 57.4 47 63.8
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 5.8e-07 57.4 46 58.7
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 5.8e-07 57.4 46 65.2
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 5.8e-07 57.4 56 53.6
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 5.8e-07 57.4 51 58.8
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 7.5e-07 57.0 80 47.5
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 9.8e-07 56.6 53 58.5
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 9.8e-07 56.6 53 58.5
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 9.8e-07 56.6 54 61.1
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 9.8e-07 56.6 62 56.5
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 1.3e-06 56.2 55 58.2
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.3e-06 56.2 30 83.3
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.3e-06 56.2 30 83.3
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 1.3e-06 56.2 27 88.9
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-06 56.2 73 50.7
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.3e-06 56.2 53 58.5
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 2.2e-06 55.5 53 58.5
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.2e-06 55.5 55 56.4
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 2.2e-06 55.5 62 51.6
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 2.2e-06 55.5 73 45.2
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.2e-06 55.5 45 57.8
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 2.9e-06 55.1 59 50.8
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 2.9e-06 55.1 64 50.0
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 2.9e-06 55.1 62 51.6
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 2.9e-06 55.1 64 46.9
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 3.7e-06 54.7 59 52.5
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 3.7e-06 54.7 48 62.5
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 3.7e-06 54.7 60 51.7
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.7e-06 54.7 50 62.0
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 3.7e-06 54.7 64 48.4
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 4.9e-06 54.3 34 76.5
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 4.9e-06 54.3 49 59.2
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.9e-06 54.3 73 49.3
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.9e-06 54.3 59 52.5
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 6.4e-06 53.9 55 54.5
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 6.4e-06 53.9 55 56.4
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 6.4e-06 53.9 55 56.4
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 6.4e-06 53.9 55 56.4
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 6.4e-06 53.9 79 48.1
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.4e-06 53.9 55 54.5
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 8.3e-06 53.5 73 46.6
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 8.3e-06 53.5 59 49.2


User provided reference genes

Program Settings