Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 6.5e-110 401.0 238 100.0
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 1.2e-108 396.7 238 99.6
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 8.0e-76 287.7 252 69.4
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 3.0e-75 285.8 191 78.5
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 6.8e-75 284.6 248 66.1
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 4.1e-72 275.4 248 68.5
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 5.4e-72 275.0 244 70.9
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 5.4e-72 275.0 246 67.5
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 7.0e-72 274.6 242 64.5
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 1.6e-71 273.5 245 75.9
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.0e-71 273.1 252 69.0
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.7e-71 272.7 201 76.1
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 2.7e-71 272.7 246 64.2
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 4.5e-71 271.9 200 76.5
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 5.9e-71 271.6 248 63.7
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 5.9e-71 271.6 250 70.4
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 1.3e-70 270.4 248 68.5
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 1.3e-70 270.4 197 77.2
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 1.3e-70 270.4 250 71.6
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.7e-70 270.0 250 70.0
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 1.7e-70 270.0 250 70.0
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 2.3e-70 269.6 246 73.6
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 2.9e-70 269.2 248 75.4
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 6.6e-70 268.1 249 63.5
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 8.6e-70 267.7 248 69.0
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 1.1e-69 267.3 197 73.1
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 1.9e-69 266.5 251 69.7
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 1.9e-69 266.5 246 74.0
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 3.3e-69 265.8 253 62.5
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 3.3e-69 265.8 250 63.2
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 3.3e-69 265.8 241 63.1
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 7.2e-69 264.6 240 61.2
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 1.6e-68 263.5 247 60.7
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 2.8e-68 262.7 250 62.0
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 2.8e-68 262.7 254 61.4
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 1.8e-67 260.0 247 72.5
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 3.0e-67 259.2 200 70.5
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 4.0e-67 258.8 199 73.4
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 2.0e-66 256.5 292 60.6
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 3.4e-66 255.8 199 70.9
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 3.4e-66 255.8 241 68.9
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 9.8e-66 254.2 247 64.8
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 9.8e-66 254.2 212 71.7
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 2.2e-65 253.1 241 59.3
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 4.9e-65 251.9 188 70.7
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 6.3e-65 251.5 266 59.0
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 1.8e-64 250.0 259 69.5
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 5.4e-64 248.4 239 60.3
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 2.7e-63 246.1 241 57.3
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 1.0e-62 244.2 241 68.0
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 1.3e-62 243.8 253 59.7
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 1.3e-62 243.8 249 59.4
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 2.3e-62 243.0 221 63.8
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 5.0e-62 241.9 245 64.1
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 5.0e-62 241.9 242 57.0
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 1.5e-61 240.4 243 57.2
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.9e-61 240.0 242 56.6
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.5e-61 239.6 241 64.3
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 3.3e-61 239.2 241 59.3
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 7.3e-61 238.0 241 58.9
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 9.5e-61 237.7 250 58.8
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 3.6e-60 235.7 200 65.5
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 4.7e-60 235.3 241 66.8
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 6.1e-60 235.0 241 63.5
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 1.4e-59 233.8 257 66.1
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 1.8e-59 233.4 241 62.7
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 3.1e-59 232.6 240 60.4
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 4.0e-59 232.3 242 57.0
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 5.2e-59 231.9 242 57.4
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 5.2e-59 231.9 252 54.8
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 6.8e-59 231.5 242 57.4
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 6.8e-59 231.5 241 62.7
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 8.9e-59 231.1 241 62.7
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 5.8e-58 228.4 188 68.6
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 9.8e-58 227.6 238 65.5
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 1.3e-57 227.3 239 55.2
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 1.7e-57 226.9 199 62.8
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 1.7e-57 226.9 241 57.7
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 3.7e-57 225.7 248 52.8
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 4.9e-57 225.3 245 54.7
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 6.4e-57 224.9 198 63.6
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 8.3e-57 224.6 245 56.3
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 1.1e-56 224.2 252 53.6
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 1.1e-56 224.2 244 63.1
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 1.1e-56 224.2 198 63.1
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 1.1e-56 224.2 198 63.1
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 3.2e-56 222.6 274 59.5
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 5.4e-56 221.9 203 62.1
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 5.4e-56 221.9 203 62.1
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 2.0e-55 219.9 202 61.9
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.0e-54 216.1 207 65.2
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 4.3e-53 212.2 203 60.1
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 4.3e-53 212.2 202 60.4
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 1.6e-52 210.3 202 59.9
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 3.1e-51 206.1 202 59.9
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 3.1e-51 206.1 175 65.7
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 1.2e-50 204.1 256 50.8
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 1.2e-50 204.1 187 58.3
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 4.4e-50 202.2 182 62.1
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 7.5e-50 201.4 136 80.1
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.3e-49 200.7 150 74.0
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 2.9e-49 199.5 242 62.4
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 4.9e-49 198.7 200 56.0
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 8.3e-49 198.0 242 62.4
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.1e-48 197.6 150 72.7
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 2.1e-47 193.4 202 57.9
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 4.6e-47 192.2 135 74.8
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 8.6e-46 188.0 134 74.6
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 1.6e-44 183.7 182 57.7
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 3.6e-44 182.6 247 47.8
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 1.5e-42 177.2 184 56.0
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.9e-41 172.9 121 76.9
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 2.0e-34 150.2 193 48.2
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 2.6e-34 149.8 205 45.9
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 2.2e-33 146.7 134 60.4
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 2.4e-32 143.3 193 48.7
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 1.2e-31 141.0 202 49.0
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 1.2e-31 141.0 184 48.4
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 2.1e-28 130.2 171 49.1
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 2.4e-27 126.7 172 47.7
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 4.6e-23 112.5 74 75.7
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 6.6e-22 108.6 175 40.6
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 1.1e-21 107.8 172 51.7
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 2.1e-20 103.6 75 72.0
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.1e-19 99.8 96 59.4
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 3.1e-19 99.8 146 58.9
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 4.9e-17 92.4 227 36.1
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 4.6e-15 85.9 97 52.6
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 3.9e-14 82.8 136 42.6
EL10Ac9g21465 Beta vulgaris HOM05D005104 ORTHO05D006614 8.7e-14 81.6 233 40.3
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 8.1e-12 75.1 182 46.7
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 9.0e-11 71.6 59 66.1
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 1.2e-10 71.2 123 40.7
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 1.2e-10 71.2 93 46.2
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 1.3e-09 67.8 126 38.9
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 3.8e-09 66.2 120 39.2
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 5.5e-08 62.4 74 51.4
FAN15G2545 Fragaria x ananassa HOM05D005104 ORTHO05D006614 5.5e-08 62.4 113 59.3
C05p26840 Brassica napus HOM05D005104 ORTHO05D006614 2.1e-07 60.5 123 37.4


User provided reference genes

Program Settings