Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1069 Acer truncatum HOM05D003336 ORTHO05D003807 3.8e-60 234.6 114 100.0
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 1.9e-51 205.7 110 91.8
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 5.2e-49 197.6 109 88.1
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 2.0e-48 195.7 110 85.5
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 2.0e-48 195.7 109 87.2
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 3.4e-48 194.9 109 87.2
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 4.4e-48 194.5 109 87.2
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 4.4e-48 194.5 110 82.7
Ca_10458_v3 Cicer arietinum L. HOM05D003336 ORTHO05D003807 5.8e-48 194.1 110 83.6
Duzib175G0004 Durio zibethinus HOM05D003336 ORTHO05D003807 5.8e-48 194.1 108 87.0
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 5.8e-48 194.1 109 85.3
Peaxi162Scf00108g01317 Petunia axillaris HOM05D003336 ORTHO05D003807 5.8e-48 194.1 109 87.2
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 7.5e-48 193.7 108 84.3
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 7.5e-48 193.7 108 85.2
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 7.5e-48 193.7 108 85.2
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 7.5e-48 193.7 109 84.4
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 9.8e-48 193.4 109 85.3
Cfa013247 Carpinus fangiana HOM05D003336 ORTHO05D003807 1.3e-47 193.0 109 86.2
Haze_21691 Corylus avellana HOM05D003336 ORTHO05D003807 1.3e-47 193.0 109 86.2
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 1.3e-47 193.0 109 86.2
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 1.3e-47 193.0 109 83.5
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 1.3e-47 193.0 109 83.5
Lj6C12T9 Lonicera japonica HOM05D003336 ORTHO05D003807 1.7e-47 192.6 109 87.2
Lj6C18T11 Lonicera japonica HOM05D003336 ORTHO05D003807 1.7e-47 192.6 109 87.2
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 1.7e-47 192.6 109 82.6
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 1.7e-47 192.6 110 80.9
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 2.2e-47 192.2 109 85.3
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 2.2e-47 192.2 108 86.1
Nitab4.5_0005460g0060 Nicotiana tabacum HOM05D003336 ORTHO05D003807 2.2e-47 192.2 109 85.3
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 3.7e-47 191.4 108 84.3
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 3.7e-47 191.4 109 85.3
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 3.7e-47 191.4 109 84.4
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 3.7e-47 191.4 109 84.4
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 3.7e-47 191.4 109 84.4
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 4.9e-47 191.0 109 84.4
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 6.4e-47 190.7 109 83.5
Dinv22743 Davidia involucrata HOM05D003336 ORTHO05D003807 6.4e-47 190.7 109 85.3
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 6.4e-47 190.7 107 84.1
Nitab4.5_0000233g0220 Nicotiana tabacum HOM05D003336 ORTHO05D003807 6.4e-47 190.7 109 83.5
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 8.3e-47 190.3 109 84.4
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 8.3e-47 190.3 109 84.4
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 8.3e-47 190.3 108 84.3
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 1.1e-46 189.9 109 83.5
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 1.4e-46 189.5 109 84.4
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.4e-46 189.5 109 81.7
Nn1g09612 Nelumbo nucifera HOM05D003336 ORTHO05D003807 1.4e-46 189.5 109 83.5
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 1.4e-46 189.5 107 85.0
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.9e-46 189.1 109 82.6
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.9e-46 189.1 109 80.7
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 1.9e-46 189.1 109 81.7
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.4e-46 188.7 109 83.5
Potri.007G129400 Populus trichocarpa HOM05D003336 ORTHO05D003807 2.4e-46 188.7 109 86.2
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 2.4e-46 188.7 109 83.5
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 3.2e-46 188.3 108 82.4
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 4.1e-46 188.0 109 82.6
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 5.4e-46 187.6 109 79.8
DCAR_026317 Daucus carota HOM05D003336 ORTHO05D003807 5.4e-46 187.6 109 82.6
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 7.0e-46 187.2 109 82.6
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 7.0e-46 187.2 109 82.6
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 9.2e-46 186.8 108 82.4
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 9.2e-46 186.8 109 82.6
FvH4_7g04970 Fragaria vesca HOM05D003336 ORTHO05D003807 9.2e-46 186.8 109 82.6
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 9.2e-46 186.8 109 82.6
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 9.2e-46 186.8 109 83.5
CSS0035259 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.2e-45 186.4 109 81.7
CSS0038429 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.2e-45 186.4 109 81.7
FAN17G2067 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.2e-45 186.4 109 81.7
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 1.2e-45 186.4 109 82.6
Aqoxy1G02652 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 2.0e-45 185.7 106 84.9
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 2.0e-45 185.7 108 81.5
GSVIVG01010779001 Vitis vinifera HOM05D003336 ORTHO05D003807 2.7e-45 185.3 109 79.8
vmacro00616 Vaccinium macrocarpon HOM05D003336 ORTHO05D003807 3.5e-45 184.9 109 80.7
vmacro00649 Vaccinium macrocarpon HOM05D003336 ORTHO05D003807 3.5e-45 184.9 109 80.7
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 4.6e-45 184.5 110 81.8
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.0e-45 184.1 107 82.2
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 7.8e-45 183.7 108 79.6
BcaB07g33710 Brassica carinata HOM05D003336 ORTHO05D003807 7.8e-45 183.7 110 77.3
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 7.8e-45 183.7 109 78.9
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 1.3e-44 183.0 108 78.7
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 1.3e-44 183.0 108 78.7
Cc04_g08960 Coffea canephora HOM05D003336 ORTHO05D003807 1.3e-44 183.0 108 82.4
MELO3C028715.2 Cucumis melo HOM05D003336 ORTHO05D003807 1.3e-44 183.0 109 80.7
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 1.7e-44 182.6 110 77.3
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.7e-44 182.6 109 80.7
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 2.3e-44 182.2 108 79.6
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 3.0e-44 181.8 110 77.3
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 3.0e-44 181.8 109 78.0
Cpa.g.sc9.295 Carica papaya HOM05D003336 ORTHO05D003807 3.0e-44 181.8 109 79.8
MELO3C000960.2 Cucumis melo HOM05D003336 ORTHO05D003807 3.0e-44 181.8 109 79.8
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 3.9e-44 181.4 110 77.3
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 3.9e-44 181.4 110 77.3
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 5.0e-44 181.0 109 79.8
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 5.0e-44 181.0 109 79.8
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 5.0e-44 181.0 109 79.8
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 5.0e-44 181.0 109 78.9
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 8.6e-44 180.3 110 75.5
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 8.6e-44 180.3 110 75.5
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 1.1e-43 179.9 110 80.0
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 1.5e-43 179.5 109 75.2
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 1.9e-43 179.1 107 81.3
Actinidia35985 Actinidia chinensis HOM05D003336 ORTHO05D003807 3.3e-43 178.3 109 77.1
Actinidia35987 Actinidia chinensis HOM05D003336 ORTHO05D003807 3.3e-43 178.3 109 77.1
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 7.3e-43 177.2 109 77.1
MBI01_g10303_MAGBIO Magnolia biondii HOM05D003336 ORTHO05D003807 9.5e-43 176.8 106 81.1
SalBow1G0055 Salvia bowleyana HOM05D003336 ORTHO05D003807 2.1e-42 175.6 108 76.9
SalBow1G1314 Salvia bowleyana HOM05D003336 ORTHO05D003807 2.1e-42 175.6 108 76.9
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 3.6e-42 174.9 107 77.6
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 4.7e-42 174.5 108 76.9
Sp7g20730 Schrenkiella parvula HOM05D003336 ORTHO05D003807 8.1e-42 173.7 109 74.3
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 2.3e-41 172.2 109 72.5
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 3.1e-41 171.8 107 77.6
SEGI_08325 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 5.2e-41 171.0 107 76.6
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.0e-40 169.1 101 80.2
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 2.9e-39 165.2 106 70.8
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 2.7e-37 158.7 105 71.4
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 1.7e-36 156.0 106 66.0
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 1.9e-35 152.5 107 68.2
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 5.6e-35 151.0 106 64.2
CDE02G0747 Ceratophyllum demersum HOM05D003336 ORTHO05D003807 9.5e-35 150.2 96 71.9
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 1.6e-34 149.4 105 62.9
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 8.1e-34 147.1 106 64.2
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 7.6e-32 140.6 103 64.1
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 9.9e-32 140.2 111 65.8
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 4.9e-31 137.9 107 57.9
Sed0015341 Sechium edule HOM05D003336 ORTHO05D003807 1.9e-30 136.0 97 72.2
A08p15940 Brassica napus HOM05D003336 ORTHO05D003807 5.1e-28 127.9 111 62.2
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.5e-27 126.3 109 61.5
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.4e-25 119.8 109 60.6
Haze_26283 Corylus avellana HOM05D003336 ORTHO05D003807 2.4e-25 119.0 106 49.1
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 6.9e-25 117.5 88 64.8
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 6.4e-23 110.9 106 57.5
Cfa023393 Carpinus fangiana HOM05D003336 ORTHO05D003807 1.9e-22 109.4 124 42.7
Prupe.1G196100 Prunus persica HOM05D003336 ORTHO05D003807 1.3e-20 103.2 109 60.6
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.0e-20 102.1 109 56.0
Lalb_Chr09g0333021 Lupinus albus HOM05D003336 ORTHO05D003807 3.0e-20 102.1 103 55.3
Sabra07G0105400 Salix brachista HOM05D003336 ORTHO05D000611 4.3e-19 98.2 99 56.6
BraA08t33567Z Brassica rapa HOM05D003336 ORTHO05D003807 1.4e-17 93.2 60 71.7
AagrBONN_evm.TU.Sc2ySwM_117.2573 Anthoceros agrestis HOM05D001778 ORTHO05D005872 3.8e-15 85.1 57 71.9
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 1.1e-14 83.6 47 76.6
CSS0002456 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.1e-09 65.5 46 71.7
Lj6C18T3 Lonicera japonica HOM05D003336 ORTHO05D003807 7.1e-06 54.3 32 75.0


User provided reference genes

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