Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1020 Acer truncatum HOM05D000002 ORTHO05D000001 1.3e-233 812.8 430 100.0
Atru.chr11.277 Acer truncatum HOM05D000002 ORTHO05D000001 2.7e-29 134.0 293 33.8
Sabra06G0056900 Salix brachista HOM05D000002 ORTHO05D000001 2.0e-21 107.8 500 27.2
Atru.chr2.3035 Acer truncatum HOM05D000002 ORTHO05D000001 6.0e-21 106.3 93 54.8
Atru.chr3.3480 Acer truncatum HOM05D000002 ORTHO05D000001 1.7e-20 104.8 146 42.5
TPR.G36567 Trifolium pratense HOM05D000002 ORTHO05D000001 8.1e-18 95.9 311 29.6
ClCG01G016080 Citrullus lanatus HOM05D000002 ORTHO05D000001 4.0e-17 93.6 98 51.0
Sed0021821 Sechium edule HOM05D000002 ORTHO05D000001 3.2e-14 84.0 115 40.9
Sopen01g017610 Solanum pennellii HOM05D000002 ORTHO05D009932 2.1e-13 81.3 119 41.2
ClCG01G011050 Citrullus lanatus HOM05D007933 ORTHO05D000001 2.7e-13 80.9 236 28.4
ClCG01G008370 Citrullus lanatus HOM05D000002 ORTHO05D000001 3.5e-13 80.5 100 47.0
Solyc05g015654.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 6.0e-13 79.7 119 41.2
Sopen01g025080 Solanum pennellii HOM05D000002 ORTHO05D000001 7.8e-13 79.3 119 40.3
Sopen02g037750 Solanum pennellii HOM05D000002 ORTHO05D000001 7.8e-13 79.3 119 40.3
Sopen07g006410 Solanum pennellii HOM05D000002 ORTHO05D000001 7.8e-13 79.3 119 40.3
Sopen07g029680 Solanum pennellii HOM05D000002 ORTHO05D000001 7.8e-13 79.3 119 40.3
Sopen07g031580 Solanum pennellii HOM05D000002 ORTHO05D000001 7.8e-13 79.3 119 40.3
Sopen08g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 7.8e-13 79.3 119 40.3
Sopen10g024730 Solanum pennellii HOM05D000002 ORTHO05D000001 7.8e-13 79.3 119 40.3
Sopen12g022570 Solanum pennellii HOM05D000002 ORTHO05D000001 7.8e-13 79.3 119 40.3
Psat3g120120 Pisum sativum HOM05D022205 ORTHO05D010776 1.7e-12 78.2 93 40.9
ClCG07G004250 Citrullus lanatus HOM05D000047 ORTHO05D000044 3.9e-12 77.0 92 46.7
TPR.G29769 Trifolium pratense HOM05D000002 ORTHO05D000001 3.9e-12 77.0 110 42.7
Atru.chr2.3036 Acer truncatum HOM05D000002 ORTHO05D000001 8.6e-12 75.9 130 40.0
RcHm_v2.0_Chr1g0326341 Rosa chinensis HOM05D000002 ORTHO05D000001 1.1e-11 75.5 165 32.7
TPR.G22883 Trifolium pratense HOM05D000269 ORTHO05D000216 1.1e-11 75.5 109 41.3
TPR.G3798 Trifolium pratense HOM05D000002 ORTHO05D000001 1.1e-11 75.5 88 43.2
GSVIVG01036343001 Vitis vinifera HOM05D000067 ORTHO05D000097 1.1e-11 75.5 329 24.3
Psat0s3652g0040 Pisum sativum HOM05D000002 ORTHO05D010776 2.5e-11 74.3 88 47.7
TAR386G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.3e-11 73.9 104 40.4
Ah.11g039570 Amaranthus hybridus HOM05D000002 ORTHO05D000001 5.6e-11 73.2 90 48.9
CAN.G1741.2 Capsicum annuum HOM05D000002 ORTHO05D000001 9.5e-11 72.4 106 39.6
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.2e-10 72.0 100 43.0
CsaV3_2G011860 Cucumis sativus L. HOM05D000002 ORTHO05D000001 1.6e-10 71.6 102 40.2
TPR.G429 Trifolium pratense HOM05D000002 ORTHO05D000001 2.1e-10 71.2 101 37.6
Psat0s2600g0040 Pisum sativum HOM05D000002 ORTHO05D010776 2.8e-10 70.9 277 27.8
Psat0s899g0080 Pisum sativum HOM05D000002 ORTHO05D010776 2.8e-10 70.9 277 27.8
TAR301G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.6e-10 70.5 314 24.5
ClCG05G012250 Citrullus lanatus HOM05D000002 ORTHO05D000001 1.1e-09 68.9 290 29.0
PGR107G0005 Punica granatum HOM05D000002 ORTHO05D000001 1.4e-09 68.6 90 36.7
Rhsim05G0026100 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.4e-09 68.6 104 39.4
Sabra18G0040600 Salix brachista HOM05D000002 ORTHO05D010776 1.4e-09 68.6 157 33.8
CAN.G128.92 Capsicum annuum HOM05D000002 ORTHO05D000001 1.8e-09 68.2 121 34.7
Manes.02G215505 Manihot esculenta HOM05D000002 ORTHO05D000001 1.8e-09 68.2 93 40.9
SEGI_13448 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.8e-09 68.2 90 41.1
TPR.G33487 Trifolium pratense HOM05D000002 ORTHO05D000001 3.1e-09 67.4 93 39.8
HanXRQChr09g0266471 Helianthus annuus HOM05D000002 ORTHO05D000001 4.0e-09 67.0 148 31.1
Nn7g37665 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.0e-09 67.0 90 40.0
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 5.2e-09 66.6 162 34.0
Atru.chr8.532 Acer truncatum HOM05D000002 ORTHO05D000001 6.8e-09 66.2 241 26.1
CAN.G439.15 Capsicum annuum HOM05D000002 ORTHO05D000001 6.8e-09 66.2 95 41.1
ClCG08G001120 Citrullus lanatus HOM05D000002 ORTHO05D000001 8.9e-09 65.9 191 31.9
ECA238G3780 Erigeron canadensis HOM05D000002 ORTHO05D002222 8.9e-09 65.9 124 33.9
CSS0017698 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-08 65.5 105 36.2
CSS0041837 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-08 65.5 105 36.2
Lalb_Chr06g0171641 Lupinus albus HOM05D000002 ORTHO05D000001 1.2e-08 65.5 98 39.8
ECA233G4547 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-08 65.1 97 38.1
ECA248G2283 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-08 65.1 145 33.8
Psat3g114760 Pisum sativum HOM05D000002 ORTHO05D000001 1.5e-08 65.1 91 39.6
TPR.G27549 Trifolium pratense HOM05D000002 ORTHO05D000001 1.5e-08 65.1 99 40.4
Aa31LG3G5060 Aethionema arabicum HOM05D000002 ORTHO05D000001 2.0e-08 64.7 330 24.8
ECA238G4116 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-08 64.7 121 35.5
QL08p061042 Quercus lobata HOM05D000002 ORTHO05D000001 2.0e-08 64.7 191 28.8
Sabra18G0120700 Salix brachista HOM05D000002 ORTHO05D000001 2.0e-08 64.7 321 25.2
CSS0034935 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-08 63.9 89 36.0
Gohir.A07G189950 Gossypium hirsutum HOM05D017795 ORTHO05D000001 3.4e-08 63.9 96 38.5
CSS0025925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.4e-08 63.5 89 37.1
Psat5g198840 Pisum sativum HOM05D000002 ORTHO05D000001 4.4e-08 63.5 91 40.7
Sabra15G0028100 Salix brachista HOM05D000002 ORTHO05D000001 4.4e-08 63.5 317 24.9
ECA240G2105 Erigeron canadensis HOM05D001392 ORTHO05D003370 7.6e-08 62.8 143 31.5
MD07G1259300 Malus domestica HOM05D000002 ORTHO05D000157 7.6e-08 62.8 481 25.8
Psat4g220640 Pisum sativum HOM05D018073 ORTHO05D000001 7.6e-08 62.8 89 40.4
CAN.G569.57 Capsicum annuum HOM05D000002 ORTHO05D000001 9.9e-08 62.4 90 35.6
RcHm_v2.0_Chr3g0465981 Rosa chinensis HOM05D000002 ORTHO05D000001 9.9e-08 62.4 114 36.8
Sabra01G0118700 Salix brachista HOM05D000002 ORTHO05D010776 9.9e-08 62.4 148 35.8
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 1.7e-07 61.6 88 38.6
SHI38836 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-07 61.2 89 39.3
Atru.chr1.2440 Acer truncatum HOM05D000002 ORTHO05D000001 2.9e-07 60.8 103 39.8
Sabra16G0101900 Salix brachista HOM05D000002 ORTHO05D010776 2.9e-07 60.8 147 34.7
PGR031G2637 Punica granatum HOM05D027407 ORTHO05D000001 3.7e-07 60.5 89 37.1
QL02p002557 Quercus lobata HOM05D000002 ORTHO05D000001 3.7e-07 60.5 97 37.1
QL12p040299 Quercus lobata HOM05D000002 ORTHO05D000001 3.7e-07 60.5 97 37.1
Aa31LG1G6100 Aethionema arabicum HOM05D000002 ORTHO05D000001 4.9e-07 60.1 328 24.1
ECA233G6050 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.9e-07 60.1 89 41.6
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 4.9e-07 60.1 97 37.1
Sopen04g007410 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 60.1 328 21.6
Sopen04g031070 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 60.1 328 21.6
Sopen06g006290 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 60.1 328 21.6
Sopen06g017910 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 60.1 328 21.6
Sopen08g013510 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 60.1 328 21.6
Sopen08g017900 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 60.1 328 21.6
Sopen10g019810 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 60.1 328 21.6
Sopen10g020730 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 60.1 328 21.6
Sopen11g010800 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 60.1 328 21.6
Sopen12g005950 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 60.1 328 21.6
Atru.chr6.1164 Acer truncatum HOM05D000002 ORTHO05D000001 6.4e-07 59.7 333 23.1
Sopen01g005460 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-07 59.7 328 21.6
Sopen01g027360 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-07 59.7 328 21.6
Sopen01g029450 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-07 59.7 328 21.6
Sopen02g010500 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-07 59.7 328 21.6
Sopen06g017860 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-07 59.7 328 21.6
Sopen08g019060 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-07 59.7 328 21.6
Sopen09g025720 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-07 59.7 328 21.6
Sopen11g025720 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-07 59.7 328 21.6
ECA232G0227 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.4e-07 59.3 228 29.4
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 8.4e-07 59.3 335 25.1
Sopen01g014880 Solanum pennellii HOM05D000002 ORTHO05D000001 8.4e-07 59.3 326 21.5
Oeu043920.1 Olea europaea HOM05D000002 ORTHO05D000001 1.1e-06 58.9 114 32.5
Sopen08g007170 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-06 58.9 95 37.9
CSS0033930 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-06 58.5 99 33.3
CSS0043941 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-06 58.5 99 33.3
MD12G1052500 Malus domestica HOM05D000002 ORTHO05D000001 1.4e-06 58.5 116 34.5
Sopen01g022510 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 58.5 328 21.3
Atru.chr10.1233 Acer truncatum HOM05D000002 ORTHO05D000001 1.9e-06 58.2 105 35.2
CSS0000236 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-06 58.2 91 35.2
CSS0041353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-06 58.2 333 23.1
CSS0042540 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-06 58.2 91 35.2
HanXRQChr07g0187191 Helianthus annuus HOM05D000002 ORTHO05D000001 1.9e-06 58.2 91 37.4
MD11G1197500 Malus domestica HOM05D000002 ORTHO05D000001 1.9e-06 58.2 113 35.4
RcHm_v2.0_Chr3g0450851 Rosa chinensis HOM05D009166 ORTHO05D022628 1.9e-06 58.2 94 37.2
CSS0043651 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-06 57.8 91 35.2
CSS0046407 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-06 57.8 91 34.1
HanXRQChr05g0138601 Helianthus annuus HOM05D000002 ORTHO05D000001 2.4e-06 57.8 91 37.4
HanXRQChr17g0568341 Helianthus annuus HOM05D000002 ORTHO05D000001 2.4e-06 57.8 97 38.1
MD04G1231400 Malus domestica HOM05D000002 ORTHO05D000001 2.4e-06 57.8 131 30.5
Hma1.2p1_1270F.1_g271670 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.2e-06 57.4 105 35.2
Hma1.2p1_1373F.1_g278770 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.2e-06 57.4 99 40.4
Hma1.2p1_2443F.1_g322295 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.2e-06 57.4 99 40.4
Rhsim02G0228300 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.1e-06 57.0 90 37.8
CSS0032534 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.4e-06 56.6 89 34.8
CAN.G2055.2 Capsicum annuum HOM05D011121 ORTHO05D018873 5.4e-06 56.6 92 33.7
Oeu064106.1 Olea europaea HOM05D000002 ORTHO05D000001 5.4e-06 56.6 128 28.1
SHI29784 Sapria himalayana HOM05D000002 ORTHO05D000001 5.4e-06 56.6 81 40.7
TAR192G0004 Trochodendron aralioides HOM05D000002 ORTHO05D000001 5.4e-06 56.6 116 32.8
RcHm_v2.0_Chr2g0159441 Rosa chinensis HOM05D000002 ORTHO05D000001 7.1e-06 56.2 86 37.2
TPR.G20034 Trifolium pratense HOM05D000002 ORTHO05D000001 7.1e-06 56.2 180 31.1
ClCG07G007990 Citrullus lanatus HOM05D000002 ORTHO05D000001 9.2e-06 55.8 100 35.0
ECA234G1548 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.2e-06 55.8 73 43.8
Manes.11G102501 Manihot esculenta HOM05D000002 ORTHO05D000001 9.2e-06 55.8 116 30.2
Potri.003G039626 Populus trichocarpa HOM05D000002 ORTHO05D000001 9.2e-06 55.8 85 34.1
Rhsim02G0101900 Rhododendron simsii HOM05D000002 ORTHO05D000001 9.2e-06 55.8 90 37.8


User provided reference genes

Program Settings