Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 1.9e-262 908.7 462 100.0
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 1.1e-209 733.4 465 80.6
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 9.7e-203 710.3 465 79.6
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 3.7e-202 708.4 466 78.8
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 3.7e-202 708.4 466 77.9
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 6.9e-201 704.1 467 79.0
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 2.2e-199 699.1 468 79.1
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 3.8e-199 698.4 470 77.7
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 6.1e-197 691.0 465 77.4
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 1.8e-196 689.5 467 77.5
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 5.7e-195 684.5 465 75.7
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 1.4e-193 679.9 465 75.1
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 9.1e-193 677.2 469 77.0
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 1.2e-189 666.8 465 73.5
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 1.0e-188 663.7 465 72.5
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.7e-188 661.0 465 72.9
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 2.0e-187 659.4 467 73.0
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.6e-187 659.1 465 72.9
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 3.3e-187 658.7 467 75.2
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.3e-186 656.8 465 72.5
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.7e-186 655.2 465 72.5
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 8.2e-186 654.1 496 70.2
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 4.1e-185 651.7 465 72.3
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 5.3e-185 651.4 466 74.5
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.2e-184 650.2 467 74.9
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.1e-182 643.7 467 73.4
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.5e-182 643.3 465 73.5
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 1.6e-181 639.8 429 78.3
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.0e-180 637.1 467 74.1
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.0e-180 637.1 465 71.8
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 2.6e-179 632.5 466 73.0
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 3.4e-179 632.1 464 70.3
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 9.8e-179 630.6 466 72.1
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 6.3e-178 627.9 466 70.2
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 1.0e-175 620.5 490 69.0
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 3.8e-175 618.6 466 69.5
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 9.4e-174 614.0 469 69.7
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 2.7e-173 612.5 466 68.7
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 2.7e-173 612.5 468 69.2
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.4e-172 610.1 466 68.5
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 1.4e-172 610.1 489 67.7
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 1.2e-171 607.1 468 68.8
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 2.6e-171 605.9 487 66.7
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 2.6e-171 605.9 468 68.6
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 2.8e-170 602.4 468 68.6
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 2.4e-169 599.4 469 68.4
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 3.1e-169 599.0 468 68.2
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 1.2e-168 597.0 466 68.7
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 1.2e-168 597.0 463 68.5
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 1.6e-168 596.7 492 64.8
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 3.5e-168 595.5 531 64.2
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 1.1e-166 590.5 470 67.7
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 6.1e-165 584.7 474 67.7
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.8e-164 583.2 522 61.5
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 2.3e-164 582.8 480 66.9
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 3.7e-162 575.5 509 62.3
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 5.6e-158 561.6 474 63.9
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 4.7e-157 558.5 497 64.0
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 1.0e-156 557.4 479 64.5
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 2.3e-156 556.2 467 65.5
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 1.3e-154 550.4 467 64.7
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 4.9e-154 548.5 491 63.3
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 6.4e-154 548.1 508 61.6
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 5.4e-153 545.0 500 59.8
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 4.6e-152 542.0 504 59.7
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 1.9e-150 536.6 435 69.2
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 6.8e-148 528.1 515 58.6
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 2.0e-147 526.6 489 59.9
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 9.8e-147 524.2 477 60.8
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.7e-146 523.5 504 58.5
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 4.1e-145 518.8 480 62.5
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 9.2e-145 517.7 478 62.6
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 9.2e-145 517.7 476 61.6
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 3.5e-144 515.8 475 61.5
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 4.6e-144 515.4 478 62.3
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 6.0e-144 515.0 485 61.4
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 6.0e-144 515.0 480 63.3
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 1.3e-143 513.8 477 60.8
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 3.3e-142 509.2 478 61.5
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 7.3e-142 508.1 545 56.7
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 2.8e-141 506.1 545 56.5
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 3.6e-141 505.8 463 62.0
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 1.1e-140 504.2 462 61.5
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 2.3e-140 503.1 368 73.4
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 5.2e-140 501.9 480 61.7
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 2.1e-136 490.0 465 58.9
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 2.7e-136 489.6 351 73.2
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 4.6e-136 488.8 487 59.1
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 7.8e-136 488.0 491 59.1
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 3.9e-135 485.7 482 57.3
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 2.5e-134 483.0 534 53.2
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 4.7e-133 478.8 487 57.9
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 8.1e-133 478.0 350 70.6
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.0e-131 473.4 419 64.2
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 9.9e-131 471.1 512 56.4
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 2.9e-130 469.5 555 51.7
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 7.8e-128 461.5 439 60.8
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 1.9e-126 456.8 555 50.6
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 5.6e-126 455.3 512 52.5
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 6.2e-125 451.8 516 52.1
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 4.0e-124 449.1 317 75.1
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 2.6e-123 446.4 487 56.5
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 5.8e-123 445.3 471 56.7
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 7.6e-123 444.9 470 57.9
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.4e-121 439.9 323 73.1
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 2.3e-111 406.8 431 54.5
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.0e-98 364.8 258 77.5
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 6.1e-80 302.4 355 49.6
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 5.5e-73 279.3 215 67.0
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 9.7e-70 268.5 261 58.2
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.2e-69 267.3 173 75.7
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 1.2e-67 261.5 223 65.5
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 2.0e-67 260.8 223 65.0
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 1.6e-64 251.1 222 64.0
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 3.6e-64 250.0 271 52.4
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 8.6e-58 228.8 491 37.1
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 7.2e-57 225.7 363 41.0
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.6e-54 217.2 517 35.4
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 8.6e-50 202.2 433 38.1
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 3.6e-48 196.8 453 36.4
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 3.6e-48 196.8 463 32.6
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 3.1e-39 167.2 484 31.2
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 3.7e-37 160.2 485 30.7
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.7e-37 160.2 484 32.9
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 4.1e-36 156.8 181 51.4
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 4.1e-36 156.8 157 57.3
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 8.6e-34 149.1 131 60.3
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 8.9e-31 139.0 140 56.4
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 1.7e-29 134.8 457 29.8
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 8.1e-24 115.9 115 52.2
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 2.5e-17 94.4 83 66.3
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 6.0e-11 73.2 41 80.5
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 4.8e-08 63.5 57 52.6
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 4.8e-08 63.5 57 52.6
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.5e-06 58.5 91 47.3
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 5.8e-06 56.6 157 34.4
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 9.9e-06 55.8 150 32.7


User provided reference genes

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