Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 2.7e-302 1041.2 516 100.0
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.3e-269 932.6 517 89.2
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 3.3e-252 874.8 510 86.5
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.3e-251 872.8 515 84.3
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.2e-249 866.3 521 84.3
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.7e-248 862.4 521 83.1
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 1.4e-247 859.4 507 85.0
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.2e-247 857.8 507 84.8
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 4.2e-247 857.8 521 82.7
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.2e-247 857.1 507 84.8
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.2e-246 856.3 511 84.1
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.1e-246 855.5 524 82.1
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.7e-246 855.1 524 82.1
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 7.9e-246 853.6 514 83.5
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.8e-245 852.4 511 83.0
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.8e-245 852.4 508 84.3
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 6.7e-245 850.5 517 82.8
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 4.8e-243 844.3 508 83.9
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.1e-242 843.2 515 81.4
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 5.3e-242 840.9 515 82.9
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 8.5e-240 833.6 502 82.7
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 1.8e-237 825.9 516 81.2
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 2.3e-237 825.5 513 80.5
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.9e-237 824.7 505 81.2
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 8.8e-237 823.5 514 80.7
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 4.4e-236 821.2 513 80.1
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 4.4e-236 821.2 513 80.5
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 5.7e-236 820.8 508 80.9
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.5e-233 812.8 507 79.1
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 1.1e-231 806.6 507 81.5
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.4e-231 806.2 529 78.3
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.9e-231 805.8 509 78.6
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.5e-231 805.4 512 79.5
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.5e-231 804.3 515 80.2
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 7.2e-231 803.9 486 81.9
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 6.1e-230 800.8 501 81.0
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.0e-229 800.0 507 79.5
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.8e-229 799.3 517 78.5
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 2.3e-229 798.9 511 79.6
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 6.7e-229 797.3 507 78.3
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-228 796.6 508 79.9
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 7.4e-228 793.9 539 76.1
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 7.4e-228 793.9 506 78.9
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 9.7e-228 793.5 509 77.8
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.7e-227 792.7 466 85.4
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 4.8e-227 791.2 539 76.3
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.1e-226 788.1 509 77.2
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 4.1e-226 788.1 511 78.3
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 5.3e-226 787.7 514 77.8
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 9.1e-226 786.9 486 80.2
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 3.5e-225 785.0 550 73.8
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 2.2e-224 782.3 512 77.7
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 6.5e-224 780.8 508 78.0
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 6.5e-224 780.8 512 78.1
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 8.5e-224 780.4 508 77.6
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 1.1e-223 780.0 517 77.0
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.1e-223 780.0 513 78.0
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 2.5e-223 778.9 513 77.8
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.5e-223 778.9 501 79.2
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 3.2e-223 778.5 489 81.4
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 5.5e-223 777.7 519 75.0
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.6e-222 776.2 509 75.8
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.1e-222 774.2 511 76.5
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.0e-221 773.5 497 79.3
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 4.0e-221 771.5 458 84.3
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 8.8e-221 770.4 506 78.1
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 2.0e-220 769.2 506 77.7
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.7e-219 766.1 511 76.5
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 8.2e-219 763.8 523 76.3
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.8e-218 762.7 514 75.5
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 1.6e-217 759.6 514 75.7
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.7e-217 758.8 506 76.5
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.7e-217 758.8 506 76.5
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 5.9e-217 757.7 429 88.1
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.2e-214 750.0 514 77.4
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 6.1e-214 747.7 544 72.2
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 8.8e-213 743.8 528 73.1
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.2e-211 739.2 477 76.9
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 2.8e-211 738.8 523 72.5
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 8.3e-211 737.3 512 74.0
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.4e-210 736.5 509 72.7
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 3.1e-210 735.3 514 74.7
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 7.0e-210 734.2 524 73.5
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.6e-209 733.0 515 73.6
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.3e-208 729.9 501 72.7
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.1e-207 726.9 594 67.2
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.9e-207 726.1 494 75.1
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 9.8e-204 713.8 507 75.1
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.7e-203 711.8 472 77.5
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 8.3e-203 710.7 525 69.9
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 4.1e-202 708.4 472 77.1
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.7e-201 705.7 521 71.0
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 5.0e-200 701.4 491 72.9
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-199 700.3 414 84.8
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.4e-197 693.3 514 69.6
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 3.6e-190 668.7 437 77.1
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 1.2e-185 653.7 519 65.7
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 3.9e-184 648.7 535 66.0
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.1e-181 640.6 469 71.9
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.4e-178 628.2 519 62.2
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.4e-170 601.7 476 65.1
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 2.1e-169 599.7 518 59.7
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.1e-167 594.0 378 78.6
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.1e-165 587.4 370 81.6
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.8e-165 586.6 480 63.5
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 4.0e-165 585.5 445 69.2
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 2.6e-164 582.8 370 81.4
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 9.9e-164 580.9 474 63.7
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.0e-160 569.3 368 78.5
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.4e-157 559.7 526 56.8
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.4e-157 559.7 392 73.7
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.4e-154 549.7 475 61.5
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 9.3e-154 547.7 354 79.7
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.0e-152 544.3 341 80.9
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 8.7e-152 541.2 473 59.4
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 3.9e-144 515.8 542 52.8
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 6.7e-144 515.0 503 54.7
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 3.1e-141 506.1 292 85.6
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 5.3e-141 505.4 337 79.2
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 6.0e-137 491.9 357 73.4
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 3.9e-136 489.2 491 53.4
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.0e-132 476.9 409 64.1
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.7e-131 473.8 490 51.2
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.2e-110 403.7 363 63.6
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.1e-109 401.4 473 51.4
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.8e-109 400.6 318 66.4
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 7.0e-109 398.7 459 48.8
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 9.8e-95 351.7 295 63.7
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.1e-85 321.6 232 71.6
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-85 321.2 316 57.9
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.9e-80 302.0 164 88.4
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.6e-79 300.4 244 63.9
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.8e-76 288.9 219 65.8
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.5e-71 274.6 147 88.4
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 7.5e-71 272.3 397 40.3
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.6e-68 264.6 145 88.3
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.3e-64 250.8 203 69.5
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.5e-63 248.1 147 81.6
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 4.1e-61 240.0 306 42.2
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 3.2e-53 213.8 330 40.9
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 7.1e-45 186.0 166 60.2
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 4.5e-39 166.8 99 79.8
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.3e-38 165.2 198 50.5
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.3e-37 159.1 117 67.5
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.9e-30 136.7 117 65.0
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 7.9e-28 129.4 334 29.0
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.8e-27 128.3 68 88.2
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 8.2e-17 92.8 434 25.3
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 2.0e-15 88.2 61 73.8
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 6.5e-14 83.2 72 58.3
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 7.2e-13 79.7 45 86.7
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.7e-12 77.8 87 55.2
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.3e-11 74.7 43 69.8
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 1.1e-10 72.4 38 89.5
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.3e-09 66.6 53 54.7
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 3.1e-08 64.3 64 57.8
CARHR263810 Cardamine hirsuta HOM05D004730 ORTHO05D005705 6.5e-06 56.6 111 38.7


User provided reference genes

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