Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 3.4e-155 551.6 269 100.0
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 3.5e-136 488.4 269 87.0
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 3.5e-136 488.4 268 86.6
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 4.6e-136 488.0 269 86.2
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 1.7e-135 486.1 269 85.9
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 3.0e-135 485.3 269 85.9
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 3.9e-135 485.0 269 86.2
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 3.9e-135 485.0 267 86.5
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 5.0e-135 484.6 269 84.8
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 5.0e-135 484.6 269 85.9
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.9e-134 482.6 269 84.4
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 3.3e-134 481.9 267 86.5
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 5.6e-134 481.1 269 84.8
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 5.6e-134 481.1 269 84.8
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 7.3e-134 480.7 269 84.4
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 7.3e-134 480.7 269 84.8
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 7.3e-134 480.7 269 84.0
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.2e-133 479.9 269 84.0
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 2.1e-133 479.2 270 84.8
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 3.6e-133 478.4 269 84.0
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 1.0e-132 476.9 269 83.6
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.8e-132 476.1 263 84.4
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 2.3e-132 475.7 271 84.1
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 2.3e-132 475.7 269 84.0
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 3.1e-132 475.3 269 84.0
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 4.0e-132 474.9 269 84.0
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 5.2e-132 474.6 269 84.4
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 5.2e-132 474.6 269 83.3
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 5.2e-132 474.6 269 83.3
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.2e-131 473.4 269 83.3
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 2.0e-131 472.6 269 83.6
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.6e-131 472.2 271 83.0
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 2.6e-131 472.2 269 83.3
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 3.4e-131 471.9 269 82.9
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 4.4e-131 471.5 306 76.8
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 4.4e-131 471.5 270 84.4
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 4.4e-131 471.5 269 82.5
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 9.8e-131 470.3 269 81.0
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.3e-130 469.9 271 83.4
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 1.3e-130 469.9 266 83.1
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 1.3e-130 469.9 269 82.2
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 1.7e-130 469.5 274 84.3
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 2.9e-130 468.8 269 82.2
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 6.4e-130 467.6 269 81.0
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 1.1e-129 466.8 269 82.5
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.4e-129 466.5 269 81.0
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.9e-129 466.1 269 82.2
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 1.9e-129 466.1 269 82.5
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 2.4e-129 465.7 269 81.0
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 2.4e-129 465.7 269 81.0
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 4.1e-129 464.9 269 82.2
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 4.1e-129 464.9 269 81.0
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 4.1e-129 464.9 269 81.0
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 5.4e-129 464.5 269 81.0
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 7.0e-129 464.2 269 81.0
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.6e-128 463.0 269 81.4
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 4.6e-128 461.5 269 81.0
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 6.0e-128 461.1 269 81.0
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.0e-127 460.3 281 77.6
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-127 460.3 269 80.7
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 1.3e-127 459.9 269 81.0
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 2.3e-127 459.1 269 80.7
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.3e-127 459.1 269 80.7
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.0e-127 458.0 269 81.8
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 5.0e-127 458.0 267 79.8
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 6.6e-127 457.6 269 80.3
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 2.5e-126 455.7 270 80.7
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 3.3e-126 455.3 271 80.1
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 5.6e-126 454.5 269 80.7
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 5.6e-126 454.5 269 81.0
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.6e-126 454.5 269 79.6
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 7.3e-126 454.1 270 80.4
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.3e-126 454.1 275 79.3
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.3e-126 454.1 275 78.9
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 9.5e-126 453.8 269 82.5
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.1e-125 452.6 275 78.9
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 2.1e-125 452.6 270 79.3
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 4.7e-125 451.4 270 80.0
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 4.7e-125 451.4 269 79.6
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 6.2e-125 451.1 267 79.8
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 1.4e-124 449.9 269 77.7
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 3.1e-124 448.7 270 79.6
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 5.2e-124 448.0 269 76.6
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.5e-123 446.4 269 78.1
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.5e-123 446.4 269 81.0
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 2.0e-123 446.0 269 76.6
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 2.0e-123 446.0 269 77.7
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 4.4e-123 444.9 252 84.5
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 4.4e-123 444.9 268 77.6
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 7.5e-123 444.1 269 76.2
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 2.9e-122 442.2 269 78.4
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 3.7e-122 441.8 269 75.5
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 3.7e-122 441.8 267 77.5
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 4.9e-122 441.4 269 79.6
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 1.4e-121 439.9 269 75.8
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 4.1e-121 438.3 286 75.2
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 4.1e-121 438.3 269 78.1
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 2.1e-120 436.0 265 77.0
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 4.6e-120 434.9 269 79.2
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 1.0e-119 433.7 244 84.8
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 1.0e-119 433.7 269 77.7
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.3e-119 432.6 275 78.2
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 3.0e-119 432.2 269 79.2
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.5e-118 429.9 269 74.0
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 1.9e-118 429.5 269 77.7
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 4.3e-118 428.3 269 77.0
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 9.5e-118 427.2 267 75.3
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 9.5e-118 427.2 265 77.0
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-116 423.7 269 77.3
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 1.8e-116 422.9 269 78.4
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 2.3e-116 422.5 267 73.4
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 3.1e-116 422.2 267 73.8
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 6.8e-116 421.0 269 76.6
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 3.4e-115 418.7 212 96.2
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-114 416.4 269 76.6
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 1.7e-114 416.4 267 71.9
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 1.1e-113 413.7 269 73.6
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 4.1e-113 411.8 269 72.9
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.6e-112 409.8 269 70.6
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 2.1e-112 409.5 266 71.8
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 6.0e-112 407.9 269 74.7
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 2.5e-110 402.5 269 72.9
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.3e-110 401.7 270 71.5
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.3e-110 401.7 270 71.5
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 7.3e-110 401.0 269 69.9
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.6e-110 400.6 276 69.6
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.6e-109 398.7 276 69.6
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.2e-109 397.9 271 69.7
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 1.1e-108 397.1 235 78.3
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 1.1e-108 397.1 271 69.7
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.4e-108 396.0 272 73.2
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.0e-108 395.2 271 69.4
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-107 393.3 276 68.8
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 4.4e-107 391.7 269 69.1
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.3e-106 390.2 270 68.1
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 2.9e-106 389.0 267 68.9
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 4.9e-106 388.3 236 79.2
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.4e-105 386.7 270 66.7
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.9e-105 386.3 269 67.3
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 3.5e-104 382.1 270 67.4
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 7.8e-104 380.9 271 67.2
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 1.5e-102 376.7 270 66.7
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 1.9e-102 376.3 270 66.7
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 3.1e-100 369.0 271 66.4
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 1.5e-99 366.7 271 65.3
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 7.4e-94 347.8 211 79.1
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.3e-93 347.1 249 65.1
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 1.6e-93 346.7 217 77.4
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.3e-92 341.7 197 83.8
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 6.4e-90 334.7 295 59.0
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.6e-88 328.6 189 82.5
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 1.9e-86 323.2 187 83.4
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 5.1e-79 298.5 271 55.4
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 2.8e-61 239.6 189 62.4
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 1.1e-60 237.7 143 80.4
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-58 231.1 133 82.0
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.0e-58 231.1 181 64.6
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 2.7e-56 223.0 127 79.5
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.0e-55 221.1 273 43.6
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 2.8e-53 213.0 188 61.2
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 7.7e-51 204.9 267 42.3
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 1.2e-43 181.0 269 42.0
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.8e-39 167.2 278 36.0
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 7.7e-35 151.8 88 81.8
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 3.8e-34 149.4 129 60.5
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 1.9e-33 147.1 82 84.1
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 1.2e-32 144.4 107 68.2
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 2.6e-30 136.7 76 84.2
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.5e-25 120.2 68 80.9
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.8e-24 116.7 69 78.3
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 4.7e-24 115.9 67 73.1
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 5.7e-22 109.0 107 51.4
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 6.2e-16 89.0 79 55.7
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 5.8e-14 82.4 49 73.5
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 5.8e-14 82.4 49 73.5
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 7.5e-14 82.0 60 63.3
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 9.8e-14 81.6 65 60.0
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 2.7e-11 73.6 57 63.2
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 4.6e-11 72.8 57 61.4
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 1.6e-08 64.3 51 60.8
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.3e-07 60.5 40 62.5


User provided reference genes

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