Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.8e-122 442.6 223 100.0
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 5.7e-76 288.1 223 69.1
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 4.0e-61 238.8 225 61.3
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 2.2e-59 233.0 225 62.2
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 3.7e-59 232.3 225 62.2
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.4e-58 229.6 228 62.3
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.1e-58 228.8 229 60.3
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 1.2e-57 227.3 223 60.1
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 2.7e-57 226.1 218 62.4
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 4.6e-57 225.3 218 61.9
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 4.6e-57 225.3 228 61.4
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 6.0e-57 224.9 228 61.0
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 1.3e-56 223.8 224 58.9
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.3e-56 223.8 226 59.3
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.7e-56 223.4 228 60.5
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 1.7e-56 223.4 225 60.4
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 5.0e-56 221.9 226 58.8
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 1.9e-55 219.9 230 57.4
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 1.2e-54 217.2 234 56.4
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.2e-54 217.2 227 59.0
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 8.1e-54 214.5 224 59.8
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 1.1e-53 214.2 227 59.5
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 4.0e-53 212.2 229 57.6
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.2e-52 210.7 233 57.1
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.0e-52 209.9 227 55.5
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.0e-52 209.9 223 55.6
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.6e-52 209.5 225 56.9
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 5.8e-52 208.4 222 56.3
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.9e-51 206.1 227 55.5
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 3.7e-51 205.7 225 56.9
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 3.7e-51 205.7 227 57.3
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 8.3e-51 204.5 223 57.0
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 8.3e-51 204.5 228 57.5
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 7.1e-50 201.4 229 57.6
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 9.2e-50 201.1 227 56.8
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.7e-48 196.8 223 52.5
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.1e-47 194.1 224 54.9
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.5e-47 193.7 222 55.0
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 1.5e-47 193.7 236 55.1
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 5.6e-47 191.8 223 54.3
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 9.5e-47 191.0 221 54.8
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 1.2e-46 190.7 224 55.8
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 2.8e-46 189.5 224 52.2
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 3.6e-46 189.1 223 54.7
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 1.8e-45 186.8 225 53.3
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 2.3e-45 186.4 225 52.9
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.3e-45 186.4 226 54.9
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 5.2e-45 185.3 225 52.0
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 6.8e-45 184.9 228 52.2
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 1.2e-44 184.1 191 56.5
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 2.0e-44 183.3 226 51.8
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 3.4e-44 182.6 223 50.7
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 4.4e-44 182.2 226 54.9
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.8e-44 181.8 227 50.7
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 5.8e-44 181.8 230 53.5
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 7.6e-44 181.4 226 51.8
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 9.9e-44 181.0 224 50.0
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 9.9e-44 181.0 228 52.6
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 9.9e-44 181.0 228 51.8
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 1.7e-43 180.3 226 53.5
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.7e-43 180.3 226 50.4
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 2.2e-43 179.9 228 54.8
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.2e-43 179.9 230 52.6
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 2.9e-43 179.5 223 51.1
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 8.4e-43 177.9 228 51.8
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 1.9e-42 176.8 228 50.4
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.2e-42 176.0 228 50.4
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 4.1e-42 175.6 229 52.4
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 4.1e-42 175.6 233 51.1
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 5.4e-42 175.3 229 51.5
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.2e-41 174.1 226 48.7
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.6e-41 173.7 228 52.6
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 2.1e-41 173.3 228 50.4
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.7e-41 172.9 226 48.2
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 1.7e-40 170.2 225 49.8
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 2.3e-40 169.9 227 52.0
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.3e-40 169.9 221 50.2
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.0e-40 169.5 225 51.1
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 3.0e-40 169.5 221 49.3
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 1.5e-39 167.2 228 49.6
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.5e-39 167.2 220 51.4
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.5e-39 167.2 220 51.4
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.5e-39 166.4 228 49.1
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 2.5e-39 166.4 227 50.2
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 4.3e-39 165.6 229 52.0
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 7.3e-39 164.9 221 50.2
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.6e-38 163.7 216 49.1
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.6e-38 163.7 237 48.5
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 2.1e-38 163.3 227 47.1
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 2.1e-38 163.3 225 50.7
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 2.1e-38 163.3 247 47.8
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.4e-37 160.6 227 47.6
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 5.2e-37 158.7 229 52.0
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.2e-36 157.5 225 50.2
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 4.4e-36 155.6 227 48.0
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 7.6e-36 154.8 226 50.0
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 7.6e-36 154.8 227 46.7
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 9.9e-36 154.5 226 47.8
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 1.7e-35 153.7 222 48.6
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 2.2e-35 153.3 253 44.7
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 2.2e-35 153.3 226 47.8
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 2.2e-35 153.3 224 47.8
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 3.8e-35 152.5 229 48.5
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.1e-34 151.0 227 45.4
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.4e-34 149.8 225 48.4
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.2e-33 147.5 195 48.7
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 1.6e-33 147.1 225 46.7
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 1.6e-33 147.1 209 49.3
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 6.0e-33 145.2 228 48.7
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 1.3e-32 144.1 227 43.6
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.7e-32 143.7 230 48.3
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.3e-32 143.3 226 46.9
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 3.0e-32 142.9 227 43.2
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 6.6e-32 141.7 218 45.0
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 6.6e-32 141.7 222 43.7
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.9e-31 140.2 226 44.2
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 2.5e-31 139.8 218 44.5
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 2.5e-31 139.8 213 45.5
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 2.5e-31 139.8 223 44.4
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 2.5e-31 139.8 221 43.4
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 3.3e-31 139.4 233 45.9
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 3.3e-31 139.4 226 45.6
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 4.3e-31 139.0 221 47.1
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.3e-30 137.5 219 47.9
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 3.6e-30 136.0 220 44.1
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 3.6e-30 136.0 223 45.3
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 1.8e-29 133.7 236 47.5
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 9.0e-29 131.3 262 42.0
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 1.2e-28 131.0 225 40.9
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 5.8e-28 128.6 225 43.6
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 1.7e-27 127.1 231 43.3
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 1.1e-26 124.4 238 44.5
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 1.4e-26 124.0 219 39.3
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.9e-26 123.6 225 42.7
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 3.2e-26 122.9 219 40.2
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 7.1e-26 121.7 140 56.4
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 2.7e-25 119.8 223 39.0
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 2.7e-25 119.8 223 39.0
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 2.7e-25 119.8 221 40.3
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 7.9e-25 118.2 221 38.9
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.1e-23 114.4 225 42.2
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 7.4e-23 111.7 228 38.2
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.6e-22 110.5 190 35.3
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 4.8e-22 109.0 171 45.6
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 8.1e-22 108.2 211 38.4
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 2.4e-21 106.7 286 34.3
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 9.0e-21 104.8 221 35.7
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 1.5e-20 104.0 221 35.7
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 2.6e-20 103.2 283 33.6
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 1.9e-18 97.1 165 43.0
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 3.2e-18 96.3 191 40.3
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 3.2e-18 96.3 226 38.5
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 9.3e-18 94.7 197 39.1
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 3.5e-17 92.8 231 35.9
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 1.3e-14 84.3 177 35.6
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 2.1e-14 83.6 83 54.2
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 2.4e-13 80.1 102 47.1
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 1.2e-12 77.8 182 36.3
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 7.6e-12 75.1 213 34.3
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 1.0e-11 74.7 213 33.3
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 1.3e-11 74.3 73 58.9
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 1.7e-11 73.9 90 51.1
TWI75G1401 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.5e-10 70.1 55 67.3
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 3.5e-09 66.2 86 52.3
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 4.6e-09 65.9 46 65.2
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 1.8e-08 63.9 95 42.1
VMungo0540G2292 Vigna mungo HOM05D004016 ORTHO05D004732 5.1e-08 62.4 68 50.0
Gorai.009G455700 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.9e-07 60.5 139 41.0
SMO347G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 8.2e-06 55.1 88 35.2


User provided reference genes

Program Settings