Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2983 Acer truncatum HOM05D003694 ORTHO05D004212 9.5e-30 132.9 69 100.0
Potri.008G107700 Populus trichocarpa HOM05D003694 ORTHO05D004212 4.5e-11 70.9 35 94.3
Potri.010G142001 Populus trichocarpa HOM05D003694 ORTHO05D004212 5.8e-11 70.5 35 94.3
Sabra08G0081400 Salix brachista HOM05D003694 ORTHO05D004212 5.8e-11 70.5 35 94.3
Sabra15G0036500 Salix brachista HOM05D003694 ORTHO05D004212 5.8e-11 70.5 35 94.3
Gorai.011G198800 Gossypium raimondii HOM05D003694 ORTHO05D004212 7.6e-11 70.1 37 91.9
Rhsim04G0233800 Rhododendron simsii HOM05D003694 ORTHO05D004212 7.6e-11 70.1 39 82.1
Atru.chr5.1018 Acer truncatum HOM05D003694 ORTHO05D004212 9.9e-11 69.7 35 94.3
THA.LOC104802703 Tarenaya hassleriana HOM05D003694 ORTHO05D004212 9.9e-11 69.7 35 91.4
THA.LOC104810208 Tarenaya hassleriana HOM05D003694 ORTHO05D004212 9.9e-11 69.7 35 91.4
THA.LOC104827091 Tarenaya hassleriana HOM05D003694 ORTHO05D004212 9.9e-11 69.7 35 91.4
MD16G1157600 Malus domestica HOM05D003694 ORTHO05D004212 1.7e-10 68.9 35 94.3
Oeu019958.1 Olea europaea HOM05D003694 ORTHO05D004212 1.7e-10 68.9 35 94.3
Ca_14108_v3 Cicer arietinum L. HOM05D001503 ORTHO05D003820 2.2e-10 68.6 35 91.4
Ca_14110_v3 Cicer arietinum L. HOM05D000660 ORTHO05D004212 2.2e-10 68.6 35 91.4
Ca_21453_v3 Cicer arietinum L. HOM05D001503 ORTHO05D003820 2.2e-10 68.6 35 91.4
COL.COLO4_23243 Corchorus olitorius HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
COL.COLO4_34653 Corchorus olitorius HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
CsaV3_6G022450 Cucumis sativus L. HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 88.6
Duzib052G0415 Durio zibethinus HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Duzib151G1193 Durio zibethinus HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Glyma.07G241700 Glycine max HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Glyma.09G038100 Glycine max HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Glyma.15G143232 Glycine max HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Glyma.17G032200 Glycine max HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Gohir.A09G235500 Gossypium hirsutum HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Gohir.A10G170900 Gossypium hirsutum HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Gohir.D09G236300 Gossypium hirsutum HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Gohir.D10G178000 Gossypium hirsutum HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Gorai.006G259400 Gossypium raimondii HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Lj4g0004117 Lotus japonicus HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Lalb_Chr07g0182121 Lupinus albus HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Lalb_Chr12g0200931 Lupinus albus HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Lalb_Chr13g0298361 Lupinus albus HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Manes.03G202400 Manihot esculenta HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Medtr4g121870 Medicago truncatula HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Medtr4g121877 Medicago truncatula HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Oeu036981.1 Olea europaea HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Phvul.003G112200 Phaseolus vulgaris HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Phvul.009G254800 Phaseolus vulgaris HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Psat0s5290g0080 Pisum sativum HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Psat4g023480 Pisum sativum HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Thecc.01G312100 Theobroma cacao HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Thecc.04G297000 Theobroma cacao HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
TWI09G1460 Tripterygium wilfordii HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
TWI53G1323 Tripterygium wilfordii HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
TWI73G0909 Tripterygium wilfordii HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
unitig_22.g6341 Utricularia gibba HOM05D003694 ORTHO05D004212 2.2e-10 68.6 35 91.4
Gohir.D07G190851 Gossypium hirsutum HOM05D003694 ORTHO05D004212 3.8e-10 67.8 40 85.0
Oeu019965.1 Olea europaea HOM05D003694 ORTHO05D004212 3.8e-10 67.8 35 91.4
arahy.Tifrunner.gnm1.ann1.GSMV4A Arachis hypogaea HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 88.6
arahy.Tifrunner.gnm1.ann1.Y758W9 Arachis hypogaea HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 88.6
Ciclev10006499m.g Citrus clementina HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 88.6
Ciclev10023233m.g Citrus clementina HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 88.6
FvH4_4g19430 Fragaria vesca HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 91.4
FAN07G2697 Fragaria x ananassa HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 91.4
FAN12G2422 Fragaria x ananassa HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 91.4
FAN12G2986 Fragaria x ananassa HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 91.4
HanXRQChr01g0029911 Helianthus annuus HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 88.6
HanXRQChr02g0048451 Helianthus annuus HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 88.6
HanXRQChr05g0148201 Helianthus annuus HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 88.6
Prupe.1G122500 Prunus persica HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 91.4
PGR004G0176 Punica granatum HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 88.6
PGR031G3896 Punica granatum HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 88.6
RcHm_v2.0_Chr4g0424471 Rosa chinensis HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 91.4
THA.LOC104802199 Tarenaya hassleriana HOM05D003694 ORTHO05D004212 4.9e-10 67.4 35 88.6
Migut.N00051 Erythranthe guttata HOM05D003694 ORTHO05D004212 6.4e-10 67.0 35 91.4
Sc13g0006410 Simmondsia chinensis HOM05D003694 ORTHO05D004212 6.4e-10 67.0 39 82.1
Duzib212G0047 Durio zibethinus HOM05D003694 ORTHO05D004212 8.4e-10 66.6 35 88.6
Gohir.A06G030200 Gossypium hirsutum HOM05D003694 ORTHO05D004212 8.4e-10 66.6 35 88.6
Gohir.A13G032900 Gossypium hirsutum HOM05D003694 ORTHO05D004212 8.4e-10 66.6 35 88.6
Gohir.D06G087300 Gossypium hirsutum HOM05D003694 ORTHO05D004212 8.4e-10 66.6 35 88.6
Gohir.D06G111200 Gossypium hirsutum HOM05D003694 ORTHO05D004212 8.4e-10 66.6 35 88.6
Gorai.001G213200 Gossypium raimondii HOM05D003694 ORTHO05D004212 8.4e-10 66.6 35 88.6
Hma1.2p1_0013F.1_g008790 Hydrangea macrophylla HOM05D003694 ORTHO05D004212 8.4e-10 66.6 35 88.6
Hma1.2p1_0078F.1_g040050 Hydrangea macrophylla HOM05D003694 ORTHO05D004212 8.4e-10 66.6 35 88.6
Sed0016103 Sechium edule HOM05D003694 ORTHO05D004212 8.4e-10 66.6 35 88.6
Sed0021312 Sechium edule HOM05D003694 ORTHO05D004212 8.4e-10 66.6 35 88.6
Actinidia15591 Actinidia chinensis HOM05D000660 ORTHO05D004212 1.1e-09 66.2 35 85.7
Actinidia40358 Actinidia chinensis HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 85.7
CSS0029801 Camellia sinensis var. sinensis HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 85.7
Cpa.g.sc18.31 Carica papaya HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 85.7
Cc03_g01040 Coffea canephora HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 85.7
MELO3C021277.2 Cucumis melo HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 85.7
MELO3C021278.2 Cucumis melo HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 85.7
Gorai.001G178400 Gossypium raimondii HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 88.6
MBI19_g19943_MAGBIO Magnolia biondii HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 85.7
Manes.15G005802 Manihot esculenta HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 88.6
Peaxi162Scf00065g00118 Petunia axillaris HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 85.7
Peaxi162Scf00164g01139 Petunia axillaris HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 85.7
TAR365G0516 Trochodendron aralioides HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 85.7
TAR636G2409 Trochodendron aralioides HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 85.7
GSVIVG01028108001 Vitis vinifera HOM05D003694 ORTHO05D004212 1.1e-09 66.2 35 85.7
Aa31LG11G7970 Aethionema arabicum HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 88.6
Aa31LG5G17290 Aethionema arabicum HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 88.6
CARHR081280 Cardamine hirsuta HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 88.6
Thhalv10015219m.g Eutrema salsugineum HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 88.6
Thhalv10021900m.g Eutrema salsugineum HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 88.6
Lsat_1_v5_gn_1_43921 Lactuca sativa HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 88.6
Lsat_1_v5_gn_6_114300 Lactuca sativa HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 88.6
Lj2g0007679 Lotus japonicus HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 88.6
Nitab4.5_0000647g0070 Nicotiana tabacum HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 85.7
Nitab4.5_0002848g0050 Nicotiana tabacum HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 85.7
Nitab4.5_0006365g0080 Nicotiana tabacum HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 85.7
Sed0020513 Sechium edule HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 88.6
PGSC0003DMG400027161 Solanum tuberosum HOM05D003694 ORTHO05D004212 1.4e-09 65.9 35 88.6
Cpa.g.sc929.3 Carica papaya HOM05D003694 ORTHO05D004212 1.9e-09 65.5 35 85.7
ClCG06G004680 Citrullus lanatus HOM05D003694 ORTHO05D004212 1.9e-09 65.5 35 85.7
Duzib138G1846 Durio zibethinus HOM05D003694 ORTHO05D004212 1.9e-09 65.5 35 88.6
Gohir.D02G058400 Gossypium hirsutum HOM05D003694 ORTHO05D004212 1.9e-09 65.5 35 88.6
Gorai.005G066000 Gossypium raimondii HOM05D003694 ORTHO05D004212 1.9e-09 65.5 35 88.6
MBI15_g23976_MAGBIO Magnolia biondii HOM05D003694 ORTHO05D004212 1.9e-09 65.5 35 85.7
MBI15_g30386_MAGBIO Magnolia biondii HOM05D003694 ORTHO05D004212 1.9e-09 65.5 35 85.7
MBI18_g28442_MAGBIO Magnolia biondii HOM05D003694 ORTHO05D004212 1.9e-09 65.5 35 85.7
Os01g0304000 Oryza sativa ssp. japonica HOM05D003694 ORTHO05D004212 1.9e-09 65.5 35 88.6
Os05g0355500 Oryza sativa ssp. japonica HOM05D003694 ORTHO05D004212 1.9e-09 65.5 35 88.6
EL10Ac3g05459 Beta vulgaris HOM05D003694 ORTHO05D004212 3.2e-09 64.7 35 85.7
CSS0032275 Camellia sinensis var. sinensis HOM05D003694 ORTHO05D004212 3.2e-09 64.7 35 82.9
Carub.0003s0623 Capsella rubella HOM05D003694 ORTHO05D004212 3.2e-09 64.7 35 88.6
Carub.0003s0624 Capsella rubella HOM05D003694 ORTHO05D004212 3.2e-09 64.7 35 88.6
Rhsim02G0005300 Rhododendron simsii HOM05D003694 ORTHO05D004212 3.2e-09 64.7 35 85.7
SalBow5G1138 Salvia bowleyana HOM05D003694 ORTHO05D004212 3.2e-09 64.7 35 88.6
Hund03109 Selenicereus undatus HOM05D003694 ORTHO05D004212 3.2e-09 64.7 35 85.7
Hund11958 Selenicereus undatus HOM05D003694 ORTHO05D004212 3.2e-09 64.7 35 85.7
ATR0234G001 Amborella trichopoda HOM05D003694 ORTHO05D004212 4.2e-09 64.3 35 85.7
ATR0693G015 Amborella trichopoda HOM05D003694 ORTHO05D004212 4.2e-09 64.3 35 85.7
CANSAT78G1544 Cannabis sativa HOM05D003694 ORTHO05D004212 4.2e-09 64.3 35 85.7
CiPaw.01G140600 Carya illinoinensis HOM05D003694 ORTHO05D004212 4.2e-09 64.3 35 82.9
CiPaw.01G140700 Carya illinoinensis HOM05D003694 ORTHO05D004212 4.2e-09 64.3 35 82.9
Migut.O00932 Erythranthe guttata HOM05D003694 ORTHO05D004212 4.2e-09 64.3 35 88.6
Gorai.010G100800 Gossypium raimondii HOM05D003694 ORTHO05D004212 4.2e-09 64.3 50 68.0
HanXRQChr09g0264221 Helianthus annuus HOM05D003694 ORTHO05D004212 4.2e-09 64.3 33 90.9
vmacro08066 Vaccinium macrocarpon HOM05D003694 ORTHO05D004212 4.2e-09 64.3 35 82.9
GSVIVG01035023001 Vitis vinifera HOM05D003694 ORTHO05D004212 4.2e-09 64.3 35 82.9
Zm00001eb130220 Zea mays HOM05D003694 ORTHO05D004212 4.2e-09 64.3 35 88.6
CARHR081290 Cardamine hirsuta HOM05D003694 ORTHO05D004212 5.4e-09 63.9 35 85.7
Cfa015342 Carpinus fangiana HOM05D003694 ORTHO05D004212 5.4e-09 63.9 35 82.9
Haze_01270 Corylus avellana HOM05D003694 ORTHO05D004212 5.4e-09 63.9 35 82.9
Nn4g25621 Nelumbo nucifera HOM05D003694 ORTHO05D004212 5.4e-09 63.9 35 85.7
Nitab4.5_0001305g0040 Nicotiana tabacum HOM05D003694 ORTHO05D004212 5.4e-09 63.9 35 85.7
Sc25g0003420 Simmondsia chinensis HOM05D003694 ORTHO05D004212 5.4e-09 63.9 35 82.9
PSO170G6603 Papaver somniferum HOM05D003694 ORTHO05D004212 7.1e-09 63.5 35 85.7
PSO357G0113 Papaver somniferum HOM05D003694 ORTHO05D004212 7.1e-09 63.5 35 85.7
Rhsim13G0177500 Rhododendron simsii HOM05D002178 ORTHO05D002373 7.1e-09 63.5 34 88.2
CiPaw.07G028500 Carya illinoinensis HOM05D003694 ORTHO05D004212 9.3e-09 63.2 35 82.9
Gohir.A02G053700 Gossypium hirsutum HOM05D003694 ORTHO05D004212 9.3e-09 63.2 35 85.7
Potri.002G196800 Populus trichocarpa HOM05D003694 ORTHO05D004212 9.3e-09 63.2 35 82.9
AL3G17820 Arabidopsis lyrata HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
AL4G22460 Arabidopsis lyrata HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
AL5G26500 Arabidopsis lyrata HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
AT3G06680 Arabidopsis thaliana HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
AT3G06700 Arabidopsis thaliana HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
BcaC05g30552 Brassica carinata HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
BcaC09g47914 Brassica carinata HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
A03p34810 Brassica napus HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
A05p41320 Brassica napus HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
BNapus_Darmor_BZH_scaffold_117p00030 Brassica napus HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
C03p42400 Brassica napus HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
C05p60570 Brassica napus HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
BolC1t05591H Brassica oleracea HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
BolC3t16510H Brassica oleracea HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
BolC5t34711H Brassica oleracea HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
BraA01t04420Z Brassica rapa HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
BraA03t12662Z Brassica rapa HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
BraA05t22855Z Brassica rapa HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
Cfa006691 Carpinus fangiana HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 80.0
Sp3g05670 Schrenkiella parvula HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
Sp3g05680 Schrenkiella parvula HOM05D003694 ORTHO05D004212 1.2e-08 62.8 35 82.9
SMO147G0013 Selaginella moellendorffii HOM05D003694 ORTHO05D004212 3.5e-08 61.2 35 85.7
Actinidia23571 Actinidia chinensis HOM05D000635 ORTHO05D004212 7.9e-08 60.1 36 77.8
Aqoxy4G03098 Aquilegia oxysepala HOM05D003694 ORTHO05D004212 7.9e-08 60.1 35 82.9
SEGI_01247 Sequoiadendron giganteum HOM05D003694 ORTHO05D004212 1.0e-07 59.7 35 80.0
AagrBONN_evm.TU.Sc2ySwM_228.446 Anthoceros agrestis HOM05D003694 ORTHO05D004212 1.8e-07 58.9 35 80.0
CiPaw.13G143600 Carya illinoinensis HOM05D003694 ORTHO05D004212 3.0e-07 58.2 35 77.1
AagrBONN_evm.TU.Sc2ySwM_228.453 Anthoceros agrestis HOM05D003694 ORTHO05D004212 5.1e-07 57.4 35 77.1
Mapoly0065s0019 Marchantia polymorpha HOM05D003694 ORTHO05D004212 8.7e-07 56.6 35 74.3
Thhalv10009732m.g Eutrema salsugineum HOM05D003694 ORTHO05D004212 1.1e-06 56.2 35 77.1
DCAR_023339 Daucus carota HOM05D003694 ORTHO05D004212 1.9e-06 55.5 35 74.3
DCAR_027014 Daucus carota HOM05D003694 ORTHO05D004212 1.9e-06 55.5 35 74.3
Pp3c10_8040 Physcomitrium patens HOM05D003694 ORTHO05D004212 5.6e-06 53.9 35 71.4
Pp3c1_34380 Physcomitrium patens HOM05D003694 ORTHO05D004212 5.6e-06 53.9 35 71.4
Pp3c14_7570 Physcomitrium patens HOM05D003694 ORTHO05D004212 7.4e-06 53.5 35 71.4


User provided reference genes

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