Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 1.1e-204 716.5 362 100.0
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 1.8e-127 459.9 371 68.2
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.7e-122 443.4 365 64.9
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 4.4e-118 428.7 371 61.5
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 7.0e-116 421.4 358 62.3
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 1.2e-112 410.6 364 61.8
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 5.8e-110 401.7 347 61.1
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 5.4e-108 395.2 369 59.1
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 5.6e-105 385.2 342 59.6
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 1.6e-104 383.6 364 57.7
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 2.1e-104 383.3 346 57.5
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 6.8e-103 378.3 367 57.5
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 8.9e-103 377.9 332 58.7
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 1.5e-102 377.1 363 56.2
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 2.0e-102 376.7 360 57.8
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 6.4e-101 371.7 369 57.5
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 6.4e-101 371.7 348 57.2
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 7.1e-100 368.2 355 56.6
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 6.0e-99 365.2 361 55.1
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 7.8e-99 364.8 350 56.3
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 1.0e-98 364.4 369 56.9
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 2.5e-97 359.8 374 55.9
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 2.5e-97 359.8 369 54.7
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.3e-97 359.4 357 55.5
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 3.3e-97 359.4 359 53.5
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 7.3e-97 358.2 371 55.8
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 7.3e-97 358.2 371 55.8
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 7.3e-97 358.2 371 55.8
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 9.6e-97 357.8 361 55.4
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 1.4e-95 354.0 362 55.2
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 1.4e-95 354.0 349 55.9
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 3.1e-95 352.8 364 54.4
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 4.0e-95 352.4 349 55.6
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 5.2e-95 352.1 361 54.3
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 9.0e-95 351.3 362 53.6
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 1.2e-94 350.9 369 51.8
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 9.9e-94 347.8 369 51.5
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 1.4e-92 344.0 367 53.4
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.2e-91 340.9 375 52.8
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 1.6e-91 340.5 354 53.1
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 1.0e-90 337.8 370 52.7
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.3e-90 337.4 364 51.6
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 1.3e-90 337.4 354 52.3
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 1.3e-90 337.4 359 51.5
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 3.0e-90 336.3 356 51.4
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 5.1e-90 335.5 355 51.3
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 5.1e-90 335.5 374 52.1
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 2.5e-89 333.2 344 52.9
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 2.5e-89 333.2 362 51.4
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 3.3e-89 332.8 366 49.7
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 1.3e-88 330.9 345 52.8
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 1.6e-88 330.5 355 51.0
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 3.6e-88 329.3 355 51.0
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 2.4e-87 326.6 346 50.9
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 5.3e-87 325.5 311 56.9
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 5.3e-87 325.5 344 52.3
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 6.9e-87 325.1 325 52.6
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 9.0e-87 324.7 349 49.0
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 2.6e-86 323.2 372 47.8
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 2.9e-85 319.7 345 50.1
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 3.8e-85 319.3 339 52.8
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 4.9e-85 318.9 350 49.4
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 4.9e-85 318.9 350 49.4
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 4.9e-85 318.9 350 49.4
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 4.9e-85 318.9 266 64.7
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 8.4e-85 318.2 341 51.0
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 1.9e-84 317.0 371 47.7
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 1.9e-84 317.0 349 49.9
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 2.1e-83 313.5 358 47.8
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 4.6e-83 312.4 368 51.1
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 3.0e-82 309.7 356 48.3
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 5.1e-82 308.9 335 53.7
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 1.9e-81 307.0 350 48.0
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 1.9e-81 307.0 353 49.0
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 2.5e-81 306.6 354 49.2
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 4.3e-81 305.8 351 48.1
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 8.1e-80 301.6 351 49.0
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 1.8e-79 300.4 367 48.5
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 2.9e-77 293.1 369 45.5
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 6.4e-77 292.0 357 45.7
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 1.1e-76 291.2 353 50.1
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 4.2e-76 289.3 362 45.0
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 9.3e-76 288.1 336 48.2
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 2.7e-75 286.6 353 48.4
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 3.5e-75 286.2 319 51.1
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 7.9e-75 285.0 349 44.7
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 6.7e-74 282.0 370 45.1
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 2.5e-73 280.0 363 42.4
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 5.6e-73 278.9 347 46.1
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 5.8e-70 268.9 296 49.3
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 6.5e-69 265.4 338 47.9
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 6.0e-67 258.8 347 41.5
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 8.7e-66 255.0 261 51.7
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 7.4e-65 251.9 349 43.6
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 4.8e-64 249.2 342 45.3
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 4.8e-64 249.2 341 45.5
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 1.2e-62 244.6 337 42.4
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 6.5e-61 238.8 341 44.3
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.0e-58 231.5 281 45.9
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 3.3e-57 226.5 194 54.6
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 1.9e-52 210.7 347 41.2
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 2.0e-49 200.7 339 37.2
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 4.8e-48 196.1 334 37.7
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 5.3e-47 192.6 369 36.0
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 4.2e-44 183.0 269 42.8
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 6.1e-43 179.1 128 66.4
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 3.9e-42 176.4 204 44.1
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 1.1e-41 174.9 199 44.7
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 3.1e-39 166.8 314 35.4
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 5.3e-39 166.0 315 36.5
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.6e-38 164.5 228 42.5
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 5.9e-38 162.5 151 51.7
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 3.6e-35 153.3 308 33.4
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.0e-34 150.2 178 46.1
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 2.7e-30 137.1 274 30.3
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 7.7e-30 135.6 98 62.2
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 2.3e-26 124.0 90 62.2
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 1.1e-23 115.2 156 41.7
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 7.0e-23 112.5 198 35.4
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 4.5e-22 109.8 111 49.5
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 4.5e-22 109.8 111 49.5
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 2.3e-21 107.5 109 50.5
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 2.3e-21 107.5 109 50.5
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 2.9e-21 107.1 109 49.5
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 1.5e-20 104.8 108 49.1
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 1.5e-20 104.8 108 50.0
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 1.5e-20 104.8 108 49.1
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 4.2e-20 103.2 152 38.2
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 1.6e-19 101.3 93 53.8
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 3.6e-19 100.1 108 49.1
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 2.6e-17 94.0 98 48.0
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 4.1e-15 86.7 61 67.2
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 7.0e-15 85.9 78 53.8
Haze_20405 Corylus avellana HOM05D005574 ORTHO05D007102 3.4e-09 67.0 60 55.0
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 4.4e-09 66.6 111 36.9


User provided reference genes

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