Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1003 Acer truncatum HOM05D000938 ORTHO05D001451 1.1e-95 353.2 174 100.0
Ciclev10000576m.g Citrus clementina HOM05D000938 ORTHO05D001451 7.0e-45 184.5 160 62.5
Potri.005G068700 Populus trichocarpa HOM05D000938 ORTHO05D001451 5.9e-44 181.4 152 62.5
CiPaw.03G117700 Carya illinoinensis HOM05D000938 ORTHO05D001451 6.5e-43 177.9 153 57.5
QL10p041154 Quercus lobata HOM05D000938 ORTHO05D001451 1.6e-41 173.3 152 58.6
Manes.12G147100 Manihot esculenta HOM05D000938 ORTHO05D001451 1.0e-40 170.6 157 56.1
CiPaw.04G079100 Carya illinoinensis HOM05D000938 ORTHO05D001451 1.4e-40 170.2 152 55.3
Sabra07G0083200 Salix brachista HOM05D000938 ORTHO05D001451 1.3e-38 163.7 155 56.1
TAR625G1159 Trochodendron aralioides HOM05D000938 ORTHO05D001451 1.3e-38 163.7 146 57.5
Potri.007G100600 Populus trichocarpa HOM05D000938 ORTHO05D001451 1.7e-38 163.3 155 58.7
Sabra05G0056100 Salix brachista HOM05D000938 ORTHO05D001451 1.7e-38 163.3 153 58.2
Manes.12G159500 Manihot esculenta HOM05D000938 ORTHO05D001451 2.8e-38 162.5 145 56.6
Nn5g28429 Nelumbo nucifera HOM05D000938 ORTHO05D001451 1.8e-37 159.8 152 53.3
Sabra05G0056000 Salix brachista HOM05D000938 ORTHO05D001451 3.1e-37 159.1 153 56.9
Dinv29655 Davidia involucrata HOM05D000938 ORTHO05D001451 4.1e-37 158.7 151 56.3
Dinv36347 Davidia involucrata HOM05D000938 ORTHO05D001451 5.3e-37 158.3 151 56.3
Dinv12778 Davidia involucrata HOM05D000938 ORTHO05D001451 3.8e-35 152.1 171 52.0
arahy.Tifrunner.gnm1.ann1.GX4ZEE Arachis hypogaea HOM05D000938 ORTHO05D001451 6.5e-35 151.4 154 57.1
AUR62006871 Chenopodium quinoa HOM05D000938 ORTHO05D001451 8.5e-35 151.0 155 51.0
TWI75G1331 Tripterygium wilfordii HOM05D000938 ORTHO05D001451 2.5e-34 149.4 153 54.2
TWI75G1557 Tripterygium wilfordii HOM05D000938 ORTHO05D001451 1.6e-33 146.7 146 54.8
Duzib187G1406 Durio zibethinus HOM05D000938 ORTHO05D001451 2.1e-33 146.4 156 53.8
FvH4_1g24940 Fragaria vesca HOM05D000938 ORTHO05D001451 2.7e-33 146.0 167 51.5
FAN19G2886 Fragaria x ananassa HOM05D000938 ORTHO05D001451 2.7e-33 146.0 167 51.5
Duzib264G1224 Durio zibethinus HOM05D000938 ORTHO05D001451 6.1e-33 144.8 155 53.5
Glyma.08G002100 Glycine max HOM05D000938 ORTHO05D001451 6.1e-33 144.8 152 54.6
MD15G1136300 Malus domestica HOM05D000938 ORTHO05D001451 6.1e-33 144.8 160 49.4
EL10Ac4g09634 Beta vulgaris HOM05D000938 ORTHO05D001451 8.0e-33 144.4 147 49.0
Rhsim10G0127000 Rhododendron simsii HOM05D000938 ORTHO05D001451 1.4e-32 143.7 152 50.7
FAN23G2201 Fragaria x ananassa HOM05D000938 ORTHO05D001451 4.0e-32 142.1 167 50.9
Lsat_1_v5_gn_5_82100 Lactuca sativa HOM05D000938 ORTHO05D001451 4.0e-32 142.1 162 48.8
FAN26G2282 Fragaria x ananassa HOM05D000938 ORTHO05D001451 6.8e-32 141.4 167 51.5
Actinidia06582 Actinidia chinensis HOM05D000938 ORTHO05D001451 1.2e-31 140.6 157 50.3
CSS0009834 Camellia sinensis var. sinensis HOM05D000938 ORTHO05D001451 1.5e-31 140.2 157 51.0
Thecc.01G138600 Theobroma cacao HOM05D000938 ORTHO05D001451 1.5e-31 140.2 156 51.3
Prupe.4G276500 Prunus persica HOM05D000938 ORTHO05D001451 2.6e-31 139.4 168 50.0
Gohir.A05G381500 Gossypium hirsutum HOM05D000938 ORTHO05D001451 4.4e-31 138.7 156 51.9
VMungo0251G2900 Vigna mungo HOM05D000938 ORTHO05D001451 7.5e-31 137.9 152 52.0
Gohir.D04G033800 Gossypium hirsutum HOM05D000938 ORTHO05D001451 1.7e-30 136.7 156 51.3
Thecc.01G138400 Theobroma cacao HOM05D000938 ORTHO05D001451 2.2e-30 136.3 142 52.8
GSVIVG01022328001 Vitis vinifera HOM05D000938 ORTHO05D001451 2.2e-30 136.3 154 47.4
Phvul.002G274500 Phaseolus vulgaris HOM05D000938 ORTHO05D001451 2.8e-30 136.0 152 50.0
Gorai.012G038100 Gossypium raimondii HOM05D000938 ORTHO05D001451 3.7e-30 135.6 156 51.3
PGR102G2206 Punica granatum HOM05D000938 ORTHO05D001451 8.3e-30 134.4 160 46.2
ECA234G2409 Erigeron canadensis HOM05D000938 ORTHO05D001451 1.4e-29 133.7 163 46.6
PGR119G0365 Punica granatum HOM05D000938 ORTHO05D001451 3.1e-29 132.5 151 48.3
CANSAT01G1052 Cannabis sativa HOM05D000938 ORTHO05D001451 4.1e-29 132.1 160 45.6
Nn1g08978 Nelumbo nucifera HOM05D000938 ORTHO05D001451 4.1e-29 132.1 147 45.6
DCAR_019991 Daucus carota HOM05D000938 ORTHO05D001451 5.4e-29 131.7 155 48.4
AUR62000526 Chenopodium quinoa HOM05D000938 ORTHO05D001451 1.2e-28 130.6 142 49.3
Oeu008233.1 Olea europaea HOM05D000938 ORTHO05D001451 1.2e-28 130.6 140 48.6
Sc09g0002220 Simmondsia chinensis HOM05D000938 ORTHO05D001451 1.2e-28 130.6 160 44.4
VMungo1309G0230 Vigna mungo HOM05D000938 ORTHO05D001451 1.2e-28 130.6 153 53.6
HanXRQChr10g0309421 Helianthus annuus HOM05D000938 ORTHO05D001451 1.6e-28 130.2 162 45.1
Phvul.009G154000 Phaseolus vulgaris HOM05D000938 ORTHO05D001451 1.6e-28 130.2 153 54.2
SGA_v2.0_scaffold273G46466 Striga asiatica HOM05D000938 ORTHO05D001451 1.6e-28 130.2 153 43.8
ClCG04G001930 Citrullus lanatus HOM05D000938 ORTHO05D001451 3.5e-28 129.0 154 46.1
Lalb_Chr07g0184261 Lupinus albus HOM05D000938 ORTHO05D001451 3.5e-28 129.0 153 49.7
Glyma.04G209700 Glycine max HOM05D000938 ORTHO05D001451 4.5e-28 128.6 154 52.6
Sed0022724 Sechium edule HOM05D000938 ORTHO05D001451 4.5e-28 128.6 151 45.0
RcHm_v2.0_Chr2g0122591 Rosa chinensis HOM05D000938 ORTHO05D001451 5.9e-28 128.3 152 50.0
Lalb_Chr11g0068651 Lupinus albus HOM05D000938 ORTHO05D001451 1.0e-27 127.5 151 53.0
PGR119G1832 Punica granatum HOM05D000938 ORTHO05D001451 1.0e-27 127.5 154 45.5
Migut.H00821 Erythranthe guttata HOM05D000938 ORTHO05D001451 1.3e-27 127.1 154 46.1
PGSC0003DMG400019873 Solanum tuberosum HOM05D000938 ORTHO05D001451 1.3e-27 127.1 152 47.4
Lj4g0000059 Lotus japonicus HOM05D000938 ORTHO05D001451 2.3e-27 126.3 152 49.3
Psat7g045480 Pisum sativum HOM05D000938 ORTHO05D001451 6.5e-27 124.8 145 50.3
Cpa.g.sc37.13 Carica papaya HOM05D000938 ORTHO05D001451 1.1e-26 124.0 155 47.1
MSTRG.23491 Avicennia marina HOM05D000938 ORTHO05D001451 3.3e-26 122.5 152 42.8
Solyc02g032850.3 Solanum lycopersicum HOM05D000938 ORTHO05D001451 3.3e-26 122.5 152 46.1
Aqoxy6G00324 Aquilegia oxysepala HOM05D000938 ORTHO05D001451 4.2e-26 122.1 157 44.6
Glyma.06G156300 Glycine max HOM05D000938 ORTHO05D001451 4.2e-26 122.1 167 50.9
Ca_17622_v3 Cicer arietinum L. HOM05D000938 ORTHO05D001451 7.2e-26 121.3 154 47.4
Nitab4.5_0006396g0010 Nicotiana tabacum HOM05D000938 ORTHO05D001451 3.6e-25 119.0 151 45.0
Ah.06g191090 Amaranthus hybridus HOM05D000938 ORTHO05D001451 1.0e-24 117.5 154 45.5
Cc02_g33890 Coffea canephora HOM05D000938 ORTHO05D001451 1.0e-24 117.5 143 43.4
CsaV3_4G030710 Cucumis sativus L. HOM05D000938 ORTHO05D001451 1.8e-24 116.7 154 42.2
MELO3C008938.2 Cucumis melo HOM05D000938 ORTHO05D001451 3.0e-24 115.9 157 43.3
Medtr8g494200 Medicago truncatula HOM05D000938 ORTHO05D001451 5.2e-24 115.2 155 46.5
Glyma.05G194350 Glycine max HOM05D000938 ORTHO05D001451 3.4e-23 112.5 117 53.0
vmacro12751 Vaccinium macrocarpon HOM05D000938 ORTHO05D001451 5.7e-23 111.7 119 47.9
arahy.Tifrunner.gnm1.ann1.RJ9TTJ Arachis hypogaea HOM05D000938 ORTHO05D001451 1.7e-22 110.2 165 42.4
MBI03_g28477_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D008663 8.3e-22 107.8 146 43.8
Hund07231 Selenicereus undatus HOM05D000938 ORTHO05D001451 8.3e-22 107.8 147 42.2
arahy.Tifrunner.gnm1.ann1.Q4LS46 Arachis hypogaea HOM05D000938 ORTHO05D001451 4.1e-21 105.5 119 52.1
THA.LOC104804461 Tarenaya hassleriana HOM05D000938 ORTHO05D001451 1.0e-19 100.9 154 42.9
COL.COLO4_12066 Corchorus olitorius HOM05D000938 ORTHO05D001451 9.5e-18 94.4 100 52.0
TPR.G37403 Trifolium pratense HOM05D000938 ORTHO05D001451 1.0e-16 90.9 143 42.0
Aa31LG10G7470 Aethionema arabicum HOM05D000938 ORTHO05D001451 1.8e-16 90.1 143 38.5
A09p45460 Brassica napus HOM05D000938 ORTHO05D001451 1.2e-15 87.4 143 37.8
BcaC07g39605 Brassica carinata HOM05D000938 ORTHO05D001451 2.0e-15 86.7 143 37.1
BraA09t40007Z Brassica rapa HOM05D000938 ORTHO05D001451 4.4e-15 85.5 143 37.1
BcaB01g00371 Brassica carinata HOM05D000938 ORTHO05D001451 5.8e-15 85.1 143 37.1
Sopen02g011180 Solanum pennellii HOM05D000938 ORTHO05D001451 5.8e-15 85.1 110 40.9
Thhalv10011112m.g Eutrema salsugineum HOM05D000938 ORTHO05D001451 7.5e-15 84.7 143 38.5
SGA_v2.0_scaffold107G30767 Striga asiatica HOM05D000938 ORTHO05D001451 9.8e-15 84.3 110 40.0
BcaC07g39604 Brassica carinata HOM05D000938 ORTHO05D001451 1.3e-14 84.0 143 37.1
BolC8t50383H Brassica oleracea HOM05D000938 ORTHO05D001451 1.3e-14 84.0 143 37.1
C08p27630 Brassica napus HOM05D000938 ORTHO05D001451 2.2e-14 83.2 143 37.1
Medtr0095s0080 Medicago truncatula HOM05D000938 ORTHO05D001451 2.9e-14 82.8 112 44.6
A09p45470 Brassica napus HOM05D000938 ORTHO05D001451 3.7e-14 82.4 143 36.4
SGA_v2.0_scaffold54G19616 Striga asiatica HOM05D000938 ORTHO05D001451 4.9e-14 82.0 120 37.5
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 6.4e-14 81.6 145 36.6
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 6.4e-14 81.6 145 36.6
BcaC06g32912 Brassica carinata HOM05D000938 ORTHO05D001451 8.3e-14 81.3 143 36.4
BcaC06g33388 Brassica carinata HOM05D000938 ORTHO05D001451 8.3e-14 81.3 143 36.4
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 8.3e-14 81.3 143 36.4
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 8.3e-14 81.3 143 36.4
arahy.Tifrunner.gnm1.ann1.KTYQ03 Arachis hypogaea HOM05D000938 ORTHO05D001451 1.4e-13 80.5 110 40.0
Actinidia20039 Actinidia chinensis HOM05D000938 ORTHO05D001451 5.4e-13 78.6 56 66.1
A04p06980 Brassica napus HOM05D000938 ORTHO05D001451 5.4e-13 78.6 145 34.5
Peaxi162Scf00331g01128 Petunia axillaris HOM05D000938 ORTHO05D001451 5.4e-13 78.6 130 35.4
Migut.L00579 Erythranthe guttata HOM05D000938 ORTHO05D001451 7.0e-13 78.2 117 36.8
CARHR162200 Cardamine hirsuta HOM05D000938 ORTHO05D001451 2.0e-12 76.6 143 38.5
Sp5g09870 Schrenkiella parvula HOM05D000938 ORTHO05D001451 2.7e-12 76.3 147 37.4
arahy.Tifrunner.gnm1.ann1.NKX1H6 Arachis hypogaea HOM05D000938 ORTHO05D001451 6.0e-12 75.1 110 38.2
Carub.0005s1881 Capsella rubella HOM05D000938 ORTHO05D001451 6.0e-12 75.1 143 36.4
Migut.L00277 Erythranthe guttata HOM05D000938 ORTHO05D001451 6.0e-12 75.1 120 36.7
MSTRG.2770 Avicennia marina HOM05D000938 ORTHO05D001451 7.8e-12 74.7 79 48.1
arahy.Tifrunner.gnm1.ann1.YKDH6D Arachis hypogaea HOM05D000938 ORTHO05D001451 1.0e-11 74.3 110 38.2
BcaB02g08570 Brassica carinata HOM05D000938 ORTHO05D001451 1.3e-11 73.9 145 35.2
SalBow7G1570 Salvia bowleyana HOM05D000938 ORTHO05D001451 1.3e-11 73.9 125 35.2
BcaC02g09259 Brassica carinata HOM05D000938 ORTHO05D001451 3.9e-11 72.4 155 33.5
C04p40610 Brassica napus HOM05D000938 ORTHO05D001451 3.9e-11 72.4 155 33.5
Carub.0005s1882 Capsella rubella HOM05D000938 ORTHO05D001451 5.0e-11 72.0 143 37.1
SEGI_39989 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 1.1e-10 70.9 146 32.2
SEGI_19951 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 1.5e-10 70.5 143 30.1
Zm00001eb202040 Zea mays HOM05D000938 ORTHO05D001451 1.9e-10 70.1 183 30.6
SEGI_09942 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 5.6e-10 68.6 147 32.7
AL5G33080 Arabidopsis lyrata HOM05D000938 ORTHO05D001451 9.5e-10 67.8 150 34.7
PGR102G1228 Punica granatum HOM05D000938 ORTHO05D001451 1.6e-09 67.0 86 45.3
AT3G52430 Arabidopsis thaliana HOM05D000938 ORTHO05D001451 2.1e-09 66.6 144 34.7
SEGI_29855 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 3.1e-08 62.8 150 30.7
BolC8t50385H Brassica oleracea HOM05D000938 ORTHO05D001451 4.0e-08 62.4 99 37.4
SEGI_16107 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 4.0e-08 62.4 143 28.7
SEGI_22398 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 4.0e-08 62.4 141 34.0
SEGI_05870 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 5.2e-08 62.0 145 31.0
SEGI_41501 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 2.0e-07 60.1 143 30.1
SEGI_01095 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 3.4e-07 59.3 145 27.6
Sed0023408 Sechium edule HOM05D000938 ORTHO05D001451 4.4e-07 58.9 131 32.1
SEGI_07447 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 5.8e-07 58.5 137 29.2
SEGI_02757 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 7.5e-07 58.2 143 29.4
SEGI_33769 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 7.5e-07 58.2 129 32.6
BraA09t40008Z Brassica rapa HOM05D000938 ORTHO05D001451 9.8e-07 57.8 99 36.4
SEGI_05598 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 9.8e-07 57.8 148 29.7
SEGI_38167 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 9.8e-07 57.8 145 28.3
SEGI_20099 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 1.3e-06 57.4 145 26.9
SEGI_40138 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 1.3e-06 57.4 147 28.6
SEGI_00224 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 1.7e-06 57.0 133 33.1
SEGI_38916 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 1.7e-06 57.0 149 28.9
Os11g0195500 Oryza sativa ssp. japonica HOM05D000938 ORTHO05D001451 2.2e-06 56.6 157 29.9


User provided reference genes

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