Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 2.4e-118 428.7 201 100.0
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 3.6e-101 371.7 188 87.2
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 6.1e-101 370.9 188 86.2
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.0e-100 370.2 188 87.2
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 1.0e-100 370.2 188 87.2
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.3e-100 369.0 188 86.7
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 3.0e-100 368.6 188 86.7
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 6.7e-100 367.5 188 86.7
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 1.1e-99 366.7 188 86.2
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 1.5e-99 366.3 188 86.2
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.9e-99 365.9 188 86.7
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 3.3e-99 365.2 188 86.2
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 4.3e-99 364.8 188 86.2
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 9.7e-99 363.6 188 85.6
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 9.7e-99 363.6 188 85.6
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 3.7e-98 361.7 188 84.0
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 6.3e-98 360.9 188 85.6
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 2.4e-97 359.0 188 85.1
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 2.4e-97 359.0 188 83.5
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 4.1e-97 358.2 188 83.5
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 4.1e-97 358.2 188 83.5
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 6.9e-97 357.5 188 85.1
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 9.1e-97 357.1 188 84.0
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 9.1e-97 357.1 188 84.0
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 1.5e-96 356.3 188 85.1
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 1.5e-96 356.3 188 84.0
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 2.0e-96 355.9 187 84.0
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 1.0e-95 353.6 188 82.4
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 1.7e-95 352.8 188 81.9
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 2.5e-94 349.0 188 83.5
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 2.5e-94 349.0 188 83.5
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 3.2e-94 348.6 188 80.9
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 5.5e-94 347.8 188 80.9
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 5.5e-94 347.8 188 80.9
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 9.4e-94 347.1 188 82.4
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 1.2e-93 346.7 188 81.9
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 1.2e-93 346.7 188 80.3
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 1.6e-93 346.3 188 81.4
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 3.6e-93 345.1 188 80.9
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 3.6e-93 345.1 188 80.9
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 3.6e-93 345.1 188 80.3
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 3.6e-93 345.1 186 82.8
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 4.7e-93 344.7 188 79.8
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 4.7e-93 344.7 188 79.8
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 4.7e-93 344.7 188 80.3
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 6.1e-93 344.4 188 80.9
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 6.1e-93 344.4 188 80.9
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 6.1e-93 344.4 188 81.4
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 1.0e-92 343.6 188 79.3
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 1.4e-92 343.2 188 80.3
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 1.8e-92 342.8 188 80.3
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 3.9e-92 341.7 188 81.4
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 6.7e-92 340.9 187 80.7
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 1.5e-91 339.7 237 68.8
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 2.0e-91 339.3 187 80.7
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 2.6e-91 339.0 187 79.1
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 3.3e-91 338.6 188 79.3
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 7.4e-91 337.4 187 78.6
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 1.3e-90 336.7 188 77.7
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 2.2e-90 335.9 188 78.2
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 8.2e-90 334.0 188 77.7
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 8.2e-90 334.0 188 77.7
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 1.1e-89 333.6 188 77.1
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 4.1e-89 331.6 188 78.7
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 5.3e-89 331.3 200 76.0
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 8.5e-87 323.9 188 76.1
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 4.2e-86 321.6 186 76.3
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 1.4e-84 316.6 196 70.9
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 1.8e-84 316.2 187 75.9
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 3.0e-84 315.5 227 63.9
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 5.2e-84 314.7 188 73.4
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 8.8e-84 313.9 188 74.5
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 2.2e-82 309.3 187 73.3
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 4.5e-80 301.6 188 71.8
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 1.7e-79 299.7 188 71.8
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 2.9e-79 298.9 187 69.0
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 3.8e-79 298.5 187 69.0
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 1.9e-78 296.2 197 68.5
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 1.9e-78 296.2 197 68.5
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 1.9e-78 296.2 190 70.5
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 8.0e-77 290.8 182 70.9
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 2.6e-75 285.8 187 66.8
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 1.7e-74 283.1 187 64.7
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.4e-73 280.0 188 70.7
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 1.3e-71 273.5 150 78.7
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 8.0e-69 264.2 187 64.7
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 3.0e-68 262.3 188 62.8
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 1.7e-66 256.5 187 59.9
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 1.7e-63 246.5 189 59.3
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 4.7e-61 238.4 191 59.2
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 5.2e-60 235.0 151 68.9
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 9.2e-57 224.2 120 81.7
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 8.6e-55 217.6 189 52.9
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 2.0e-48 196.4 138 65.2
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 1.2e-43 180.6 133 60.2
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.2e-37 160.6 95 70.5
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.1e-37 159.8 117 65.8
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 4.7e-37 158.7 100 67.0
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.6e-32 143.7 83 74.7
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 3.0e-23 112.8 59 88.1
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.5e-22 109.8 76 59.2
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 2.6e-19 99.8 89 49.4
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 3.5e-16 89.4 72 51.4
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 9.6e-14 81.3 62 54.8
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 3.2e-09 66.2 34 85.3
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 5.1e-07 58.9 34 73.5


User provided reference genes

Program Settings