Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 4.2e-180 634.8 375 100.0
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 7.6e-105 384.8 388 59.8
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 6.6e-93 345.1 381 60.6
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.6e-91 340.5 393 60.6
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 5.3e-90 335.5 398 55.5
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.9e-87 327.0 402 57.2
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 4.2e-87 325.9 387 54.3
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.1e-86 323.6 394 52.8
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 7.9e-86 321.6 380 57.4
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.9e-84 317.0 397 54.2
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 3.3e-84 316.2 389 55.0
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 3.7e-83 312.8 386 56.0
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.4e-82 310.8 385 55.6
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 4.0e-82 309.3 385 55.3
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 6.9e-82 308.5 385 55.3
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.9e-80 302.4 398 55.5
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 1.4e-79 300.8 392 55.9
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.4e-79 300.8 393 53.9
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 3.2e-79 299.7 400 55.2
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 5.5e-79 298.9 381 52.8
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.1e-79 298.5 402 54.7
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.2e-78 297.7 385 54.0
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 2.1e-78 297.0 408 49.8
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 7.9e-78 295.0 405 51.9
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 1.3e-77 294.3 402 53.2
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 8.7e-77 291.6 390 52.1
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 9.6e-76 288.1 385 56.9
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 6.9e-74 282.0 383 49.1
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 6.9e-74 282.0 383 49.1
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.4e-73 279.6 382 47.6
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.4e-73 279.6 383 52.5
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 4.5e-73 279.3 389 47.8
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 1.0e-72 278.1 362 55.0
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 3.8e-72 276.2 388 51.8
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.4e-71 274.2 387 49.6
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 2.5e-71 273.5 382 50.5
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 2.5e-71 273.5 382 50.5
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 4.6e-70 269.2 385 50.6
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 4.6e-70 269.2 385 50.9
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 6.1e-70 268.9 379 49.6
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 6.1e-70 268.9 387 48.1
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.0e-69 268.1 379 47.5
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.3e-69 267.7 379 53.8
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.8e-69 267.3 382 49.2
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.1e-68 264.6 385 50.9
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.3e-68 262.7 382 48.2
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 5.7e-68 262.3 381 49.1
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 2.2e-67 260.4 382 51.8
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 6.3e-67 258.8 397 49.4
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 4.1e-66 256.1 396 49.7
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 9.0e-66 255.0 382 49.7
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.7e-64 250.8 380 49.2
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 2.2e-64 250.4 385 48.3
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 6.5e-64 248.8 375 46.7
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 8.5e-64 248.4 386 48.2
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.9e-63 247.3 364 46.7
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 2.5e-63 246.9 392 51.0
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.2e-63 246.5 333 54.4
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.2e-62 244.6 385 48.1
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.4e-61 241.1 379 51.7
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 3.9e-61 239.6 386 45.1
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 5.1e-61 239.2 363 45.2
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 8.8e-61 238.4 388 45.4
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.2e-59 233.8 397 45.8
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 6.9e-58 228.8 395 44.3
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 9.1e-58 228.4 396 44.2
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.2e-57 228.0 360 50.3
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.5e-57 227.6 395 47.1
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 5.9e-57 225.7 382 47.4
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.0e-56 224.9 343 53.1
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 1.3e-56 224.6 395 46.3
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.8e-56 223.0 343 52.8
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.0e-56 222.6 343 53.1
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 9.4e-55 218.4 382 44.8
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 9.4e-55 218.4 382 49.7
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 2.1e-54 217.2 390 48.7
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 2.7e-54 216.9 383 44.1
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 7.9e-54 215.3 398 46.2
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 1.4e-53 214.5 380 43.4
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 2.3e-53 213.8 394 45.7
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 3.0e-53 213.4 385 45.7
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.1e-53 212.6 395 45.1
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 1.1e-52 211.5 389 46.0
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 2.0e-52 210.7 402 43.3
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 2.0e-52 210.7 357 47.6
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 2.6e-52 210.3 381 46.7
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.8e-50 204.1 379 43.8
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 4.5e-49 199.5 374 39.3
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 4.5e-49 199.5 374 39.3
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.0e-48 198.4 385 47.0
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.9e-48 196.8 377 37.7
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.5e-47 194.5 342 47.1
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 2.7e-46 190.3 394 45.2
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.0e-45 186.8 262 44.7
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.2e-43 180.6 382 41.1
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.7e-43 179.9 375 44.0
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.2e-41 174.9 383 42.6
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.2e-41 174.9 383 42.6
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.6e-41 173.7 395 35.4
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 2.9e-40 170.2 380 38.4
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 6.5e-40 169.1 336 46.1
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 3.2e-39 166.8 345 42.9
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 8.0e-38 162.2 380 38.9
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 4.0e-37 159.8 384 35.9
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.5e-36 157.9 390 36.4
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 2.6e-36 157.1 386 36.0
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 2.6e-36 157.1 347 42.1
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.2e-35 154.1 385 36.4
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 3.1e-34 150.2 383 35.5
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 4.1e-34 149.8 388 36.1
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 4.1e-34 149.8 321 47.7
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.6e-33 147.9 385 39.5
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 1.6e-33 147.9 376 38.8
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 7.7e-33 145.6 376 38.3
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.1e-31 141.7 383 35.8
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.9e-31 141.0 384 40.9
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 4.2e-31 139.8 376 38.3
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 4.0e-29 133.3 380 32.4
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.5e-28 131.3 316 34.5
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 7.5e-28 129.0 316 34.5
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 1.1e-26 125.2 227 45.4
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 3.1e-26 123.6 316 38.0
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.2e-25 121.7 393 32.8
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.6e-25 121.3 159 64.8
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 7.7e-25 119.0 326 36.2
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.7e-24 117.9 349 36.7
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.1e-23 115.2 349 36.1
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 1.2e-22 111.7 319 32.6
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 3.6e-22 110.2 351 36.2
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 6.1e-22 109.4 294 42.2
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.0e-21 108.6 308 36.4
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 1.0e-21 108.6 373 36.5
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 1.8e-21 107.8 225 46.2
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 5.2e-21 106.3 332 31.3
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 6.8e-21 105.9 190 43.2
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 3.4e-20 103.6 370 33.8
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.3e-19 101.7 156 59.6
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.4e-18 98.2 313 31.6
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 5.4e-18 96.3 376 31.9
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-16 91.3 302 33.4
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 2.3e-16 90.9 302 33.4
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 5.0e-16 89.7 309 32.0
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 7.3e-15 85.9 374 26.2
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 5.2e-13 79.7 309 30.4
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 5.2e-13 79.7 309 30.4
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 6.8e-13 79.3 303 32.0
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.0e-12 77.8 112 43.8
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 3.4e-12 77.0 262 31.3
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 6.4e-11 72.8 384 30.2
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 9.2e-10 68.9 347 30.0
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 1.7e-08 64.7 347 29.4
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 3.0e-08 63.9 205 32.7
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 5.0e-08 63.2 300 29.7
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 6.6e-08 62.8 300 29.7


User provided reference genes

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