Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.844 Acer truncatum HOM05D000688 ORTHO05D052037 2.2e-97 359.0 183 100.0
Atru.chr2.841 Acer truncatum HOM05D000688 ORTHO05D004737 5.9e-10 68.6 36 94.4
Thecc.09G016000 Theobroma cacao HOM05D000688 ORTHO05D004737 3.8e-09 65.9 36 88.9
Gohir.A07G032700 Gossypium hirsutum HOM05D000688 ORTHO05D004737 8.5e-09 64.7 36 86.1
Gohir.D07G036000 Gossypium hirsutum HOM05D000688 ORTHO05D004737 8.5e-09 64.7 36 86.1
Gorai.001G037900 Gossypium raimondii HOM05D000688 ORTHO05D004737 8.5e-09 64.7 36 86.1
Duzib168G0339 Durio zibethinus HOM05D000688 ORTHO05D004737 1.1e-08 64.3 36 86.1
Cpa.g.sc127.33 Carica papaya HOM05D000688 ORTHO05D004737 2.5e-08 63.2 36 80.6
Manes.16G129400 Manihot esculenta HOM05D000688 ORTHO05D004737 2.5e-08 63.2 37 81.1
Glyma.04G061000 Glycine max HOM05D000688 ORTHO05D004737 3.2e-08 62.8 36 83.3
Glyma.06G061600 Glycine max HOM05D000688 ORTHO05D004737 3.2e-08 62.8 36 83.3
Manes.03G009000 Manihot esculenta HOM05D000688 ORTHO05D004737 3.2e-08 62.8 36 83.3
Phvul.009G087100 Phaseolus vulgaris HOM05D000688 ORTHO05D004737 3.2e-08 62.8 36 83.3
Ciclev10018562m.g Citrus clementina HOM05D000688 ORTHO05D004737 7.2e-08 61.6 36 80.6
COL.COLO4_29107 Corchorus olitorius HOM05D000688 ORTHO05D004737 7.2e-08 61.6 36 83.3
Aa31LG8G4940 Aethionema arabicum HOM05D000688 ORTHO05D004737 9.4e-08 61.2 36 75.0
AL3G31250 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 9.4e-08 61.2 36 75.0
AT3G18090 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 9.4e-08 61.2 36 75.0
AT3G23780 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 9.4e-08 61.2 36 75.0
CARHR094240 Cardamine hirsuta HOM05D000688 ORTHO05D004737 9.4e-08 61.2 36 75.0
COL.COLO4_18947 Corchorus olitorius HOM05D000688 ORTHO05D004737 9.4e-08 61.2 36 80.6
Thhalv10019931m.g Eutrema salsugineum HOM05D000688 ORTHO05D004737 9.4e-08 61.2 36 75.0
Sp3g16210 Schrenkiella parvula HOM05D000688 ORTHO05D004737 9.4e-08 61.2 36 75.0
FvH4_1g06870 Fragaria vesca HOM05D000688 ORTHO05D004737 1.6e-07 60.5 36 75.0
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.6e-07 60.5 36 75.0
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.6e-07 60.5 36 75.0
FAN26G2550 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.6e-07 60.5 36 75.0
FAN26G3128 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.6e-07 60.5 36 75.0
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.6e-07 60.5 36 75.0
THA.LOC104812243 Tarenaya hassleriana HOM05D000688 ORTHO05D004737 1.6e-07 60.5 36 77.8
VMungo1309G2219 Vigna mungo HOM05D000688 ORTHO05D004737 1.6e-07 60.5 36 80.6
Lsat_1_v5_gn_2_114740 Lactuca sativa HOM05D000688 ORTHO05D004737 2.1e-07 60.1 46 69.6
RcHm_v2.0_Chr2g0092681 Rosa chinensis HOM05D000688 ORTHO05D004737 2.1e-07 60.1 36 75.0
C05p48100 Brassica napus HOM05D000688 ORTHO05D004737 2.7e-07 59.7 46 63.0
BolC5t33520H Brassica oleracea HOM05D000688 ORTHO05D004737 2.7e-07 59.7 46 63.0
Lalb_Chr08g0244431 Lupinus albus HOM05D000688 ORTHO05D004737 2.7e-07 59.7 36 77.8
SHI21063 Sapria himalayana HOM05D000688 ORTHO05D004737 2.7e-07 59.7 36 80.6
A05p31700 Brassica napus HOM05D000688 ORTHO05D004737 3.6e-07 59.3 36 72.2
BraA05t22003Z Brassica rapa HOM05D000688 ORTHO05D004737 3.6e-07 59.3 36 72.2
Carub.0003s1782 Capsella rubella HOM05D000688 ORTHO05D004737 3.6e-07 59.3 36 72.2
ECA238G1344 Erigeron canadensis HOM05D000688 ORTHO05D004737 3.6e-07 59.3 36 80.6
Ca_15777_v3 Cicer arietinum L. HOM05D000688 ORTHO05D004737 4.6e-07 58.9 36 77.8
MD15G1040100 Malus domestica HOM05D000688 ORTHO05D004737 4.6e-07 58.9 36 72.2
Sed0003356 Sechium edule HOM05D000688 ORTHO05D004737 4.6e-07 58.9 36 77.8
Psat5g032960 Pisum sativum HOM05D000688 ORTHO05D004737 6.1e-07 58.5 36 77.8
DCAR_022858 Daucus carota HOM05D000688 ORTHO05D004737 7.9e-07 58.2 46 65.2
HanXRQChr01g0011481 Helianthus annuus HOM05D000688 ORTHO05D004737 7.9e-07 58.2 46 67.4
Lj1g0018077 Lotus japonicus HOM05D000688 ORTHO05D004737 7.9e-07 58.2 36 75.0
TWI63G0903 Tripterygium wilfordii HOM05D000688 ORTHO05D004737 7.9e-07 58.2 36 77.8
arahy.Tifrunner.gnm1.ann1.35ZHP3 Arachis hypogaea HOM05D000688 ORTHO05D004737 1.0e-06 57.8 36 75.0
arahy.Tifrunner.gnm1.ann1.QT4Q57 Arachis hypogaea HOM05D000688 ORTHO05D004737 1.0e-06 57.8 36 75.0
Haze_21420 Corylus avellana HOM05D000688 ORTHO05D004737 1.0e-06 57.8 36 75.0
QL02p018902 Quercus lobata HOM05D000688 ORTHO05D004737 1.0e-06 57.8 36 75.0
Medtr3g105990 Medicago truncatula HOM05D000688 ORTHO05D004737 1.4e-06 57.4 36 75.0
TPR.G1854 Trifolium pratense HOM05D000688 ORTHO05D004737 1.4e-06 57.4 36 75.0
Potri.018G019100 Populus trichocarpa HOM05D000688 ORTHO05D004737 1.8e-06 57.0 36 72.2
Prupe.1G393500 Prunus persica HOM05D000688 ORTHO05D004737 1.8e-06 57.0 36 72.2
CiPaw.07G230000 Carya illinoinensis HOM05D000688 ORTHO05D004737 2.3e-06 56.6 36 72.2
Lalb_Chr23g0268231 Lupinus albus HOM05D000688 ORTHO05D004737 2.3e-06 56.6 36 72.2
ClCG05G016300 Citrullus lanatus HOM05D000688 ORTHO05D004737 3.9e-06 55.8 36 75.0
MELO3C016960.2 Cucumis melo HOM05D000688 ORTHO05D004737 3.9e-06 55.8 36 75.0
CsaV3_4G036560 Cucumis sativus L. HOM05D000688 ORTHO05D004737 3.9e-06 55.8 36 75.0
Medtr0189s0050 Medicago truncatula HOM05D000688 ORTHO05D004737 3.9e-06 55.8 36 72.2
RcHm_v2.0_Chr5g0042241 Rosa chinensis HOM05D000688 ORTHO05D004737 3.9e-06 55.8 37 67.6
Cc08_g05510 Coffea canephora HOM05D000688 ORTHO05D004737 5.1e-06 55.5 46 60.9
MD08G1057300 Malus domestica HOM05D000688 ORTHO05D004737 5.1e-06 55.5 36 66.7
CANSAT25G1723 Cannabis sativa HOM05D000688 ORTHO05D004737 6.7e-06 55.1 36 69.4
RcHm_v2.0_Chr5g0042281 Rosa chinensis HOM05D000688 ORTHO05D004737 6.7e-06 55.1 36 66.7
SalBow6G0619 Salvia bowleyana HOM05D000688 ORTHO05D004737 6.7e-06 55.1 46 63.0
SalBow6G4737 Salvia bowleyana HOM05D000688 ORTHO05D004737 6.7e-06 55.1 46 63.0
unitig_8.g3064 Utricularia gibba HOM05D000688 ORTHO05D037575 6.7e-06 55.1 36 72.2
DCAR_009948 Daucus carota HOM05D000688 ORTHO05D004737 8.8e-06 54.7 46 63.0
Lj8A737G24 Lonicera japonica HOM05D000688 ORTHO05D004737 8.8e-06 54.7 36 69.4


User provided reference genes

Program Settings