Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 4.2e-63 244.6 129 100.0
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 6.1e-54 214.2 126 87.3
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 3.9e-53 211.5 126 84.9
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 3.9e-53 211.5 126 84.9
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 3.9e-53 211.5 129 86.8
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 6.7e-53 210.7 129 86.0
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 1.1e-52 209.9 126 85.7
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 2.0e-52 209.1 129 85.3
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 2.0e-52 209.1 126 84.1
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 2.6e-52 208.8 125 84.0
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 3.3e-52 208.4 126 84.9
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 4.4e-52 208.0 124 85.5
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 7.4e-52 207.2 126 84.1
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 9.7e-52 206.8 126 83.3
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 9.7e-52 206.8 126 83.3
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 9.7e-52 206.8 126 82.5
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 1.3e-51 206.5 126 84.1
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 1.7e-51 206.1 126 82.5
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 1.7e-51 206.1 126 83.3
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 2.2e-51 205.7 128 82.8
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 2.2e-51 205.7 126 84.1
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 2.8e-51 205.3 129 82.2
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.8e-51 205.3 126 83.3
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 3.7e-51 204.9 125 82.4
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 3.7e-51 204.9 126 82.5
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 4.8e-51 204.5 126 84.1
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 4.8e-51 204.5 126 82.5
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 4.8e-51 204.5 126 84.1
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 4.8e-51 204.5 126 82.5
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.3e-51 204.1 126 82.5
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 6.3e-51 204.1 126 82.5
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 8.2e-51 203.8 129 82.9
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 8.2e-51 203.8 129 81.4
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 8.2e-51 203.8 126 81.7
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 8.2e-51 203.8 126 81.7
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 8.2e-51 203.8 126 81.7
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 1.1e-50 203.4 124 82.3
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 1.1e-50 203.4 126 81.7
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 1.4e-50 203.0 126 81.0
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.4e-50 203.0 129 83.7
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.8e-50 202.6 126 81.7
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 1.8e-50 202.6 126 81.7
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 1.8e-50 202.6 127 80.3
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 2.4e-50 202.2 123 83.7
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.4e-50 202.2 126 81.7
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 2.4e-50 202.2 129 82.9
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 2.4e-50 202.2 126 81.0
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.1e-50 201.8 126 81.0
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.1e-50 201.8 126 81.0
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 3.1e-50 201.8 126 80.2
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 3.1e-50 201.8 126 81.7
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 3.1e-50 201.8 126 81.7
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 4.1e-50 201.4 127 81.9
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 4.1e-50 201.4 127 80.3
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 5.3e-50 201.1 126 81.0
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 5.3e-50 201.1 126 81.0
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 7.0e-50 200.7 123 83.7
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 7.0e-50 200.7 129 79.1
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 7.0e-50 200.7 127 79.5
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 7.0e-50 200.7 129 79.8
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 9.1e-50 200.3 124 82.3
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 1.2e-49 199.9 127 79.5
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 1.2e-49 199.9 126 81.7
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.2e-49 199.9 126 81.7
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 2.6e-49 198.7 129 79.1
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 4.5e-49 198.0 125 80.0
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 5.9e-49 197.6 129 77.5
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 7.7e-49 197.2 129 79.1
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 1.0e-48 196.8 121 82.6
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 1.7e-48 196.1 129 78.3
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 2.2e-48 195.7 126 77.8
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 2.2e-48 195.7 129 78.3
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 2.2e-48 195.7 126 80.2
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 1.5e-47 193.0 127 78.0
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 3.2e-47 191.8 129 76.7
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 3.2e-47 191.8 129 79.1
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 2.1e-46 189.1 126 77.0
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 2.7e-46 188.7 121 79.3
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 3.0e-45 185.3 128 74.2
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 5.2e-45 184.5 129 75.2
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 1.2e-44 183.3 124 75.8
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.5e-44 183.0 126 75.4
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.0e-44 182.6 126 74.6
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 2.0e-44 182.6 126 70.6
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 2.0e-44 182.6 126 74.6
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 4.4e-44 181.4 126 73.0
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 4.4e-44 181.4 128 73.4
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 9.7e-44 180.3 128 72.7
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 9.7e-44 180.3 118 78.0
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 1.7e-43 179.5 126 72.2
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 2.2e-43 179.1 127 72.4
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 3.7e-43 178.3 127 73.2
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 3.7e-43 178.3 129 72.1
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 4.8e-43 177.9 118 76.3
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 4.8e-43 177.9 118 76.3
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 1.1e-42 176.8 129 71.3
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 1.1e-42 176.8 130 71.5
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 1.4e-42 176.4 121 72.7
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 1.8e-42 176.0 132 69.7
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 1.8e-42 176.0 121 72.7
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 2.4e-42 175.6 131 71.0
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 9.1e-42 173.7 131 69.5
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 9.1e-42 173.7 131 69.5
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 3.5e-41 171.8 129 71.3
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 2.9e-40 168.7 126 67.5
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 3.2e-39 165.2 129 69.0
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 3.2e-39 165.2 129 69.0
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 4.2e-39 164.9 126 69.0
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 5.5e-39 164.5 129 69.0
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 4.7e-38 161.4 126 65.1
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 8.0e-38 160.6 146 59.6
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 8.0e-38 160.6 126 66.7
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.0e-37 160.2 126 65.1
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 1.4e-37 159.8 126 64.3
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.3e-37 159.1 154 59.1
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 1.6e-33 146.4 126 61.1
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 3.5e-33 145.2 88 84.1
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 5.0e-32 141.4 126 57.9
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 4.2e-31 138.3 126 57.1
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 4.2e-31 138.3 87 80.5
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 9.5e-31 137.1 88 77.3
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 5.2e-29 131.3 87 77.0
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 1.2e-28 130.2 126 54.8
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 4.1e-26 121.7 87 69.0
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 2.7e-25 119.0 133 49.6
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 6.1e-22 107.8 121 48.8
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 7.0e-18 94.4 122 45.9
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 1.0e-16 90.5 122 42.6
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.3e-16 90.1 61 73.8
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 2.3e-13 79.3 46 84.8
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 4.1e-10 68.6 38 84.2
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 1.2e-09 67.0 39 82.1
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 6.6e-08 61.2 89 42.7
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.5e-07 60.1 31 87.1
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 2.5e-07 59.3 41 73.2


User provided reference genes

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