Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 3.9e-108 395.2 263 100.0
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 1.6e-56 223.8 252 62.7
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 5.4e-49 198.7 256 59.8
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 1.0e-47 194.5 266 50.8
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 1.6e-45 187.2 252 52.8
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 1.6e-45 187.2 252 52.8
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 3.6e-45 186.0 252 52.0
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 6.2e-45 185.3 252 55.2
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 1.1e-44 184.5 255 51.8
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 5.2e-44 182.2 257 51.4
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 8.9e-44 181.4 252 52.8
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 6.4e-42 175.3 254 52.0
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 4.1e-41 172.6 254 51.2
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 7.1e-41 171.8 255 47.8
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 2.7e-40 169.9 257 49.8
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 1.6e-37 160.6 271 49.8
FvH4_3g19630 Fragaria vesca HOM05D007784 ORTHO05D008654 3.6e-37 159.5 271 55.4
FAN11G2265 Fragaria x ananassa HOM05D007784 ORTHO05D008654 3.6e-37 159.5 271 55.4
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 8.1e-37 158.3 259 46.3
FAN21G3158 Fragaria x ananassa HOM05D007784 ORTHO05D008654 4.0e-36 156.0 270 54.1
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 5.2e-36 155.6 266 48.5
CiPaw.11G171500 Carya illinoinensis HOM05D007784 ORTHO05D008654 2.2e-34 150.2 282 47.9
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 2.2e-34 150.2 261 47.5
MD03G1230800 Malus domestica HOM05D007784 ORTHO05D008654 1.6e-32 144.1 260 47.3
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 2.1e-32 143.7 248 46.4
FAN25G3654 Fragaria x ananassa HOM05D007784 ORTHO05D008654 2.7e-32 143.3 270 53.0
Prupe.4G177000 Prunus persica HOM05D007784 ORTHO05D008654 6.0e-32 142.1 262 47.7
RcHm_v2.0_Chr5g0032821 Rosa chinensis HOM05D007784 ORTHO05D008654 4.3e-30 136.0 267 43.8
CiPaw.12G119800 Carya illinoinensis HOM05D007784 ORTHO05D008654 9.6e-30 134.8 256 49.2
CANSAT56G4083 Cannabis sativa HOM05D007784 ORTHO05D008654 1.4e-28 131.0 272 56.6
PGR031G1623 Punica granatum HOM05D007784 ORTHO05D008654 4.0e-28 129.4 261 43.7
FAN16G2579 Fragaria x ananassa HOM05D007784 ORTHO05D008654 3.4e-27 126.3 249 45.4
Gorai.013G169700 Gossypium raimondii HOM05D007784 ORTHO05D008654 6.4e-26 122.1 181 51.9
Duzib170G0657 Durio zibethinus HOM05D007784 ORTHO05D008654 2.4e-25 120.2 249 46.2
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 1.6e-24 117.5 260 48.1
ClCG11G017920 Citrullus lanatus HOM05D007784 ORTHO05D008654 6.0e-24 115.5 251 41.4
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 3.0e-23 113.2 247 41.3
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 1.5e-22 110.9 249 43.0
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 3.3e-22 109.8 254 40.9
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 7.3e-22 108.6 244 45.1
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 9.6e-22 108.2 252 35.3
Glyma.06G238300 Glycine max HOM05D007784 ORTHO05D008654 1.3e-21 107.8 255 45.9
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 1.3e-21 107.8 273 39.2
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 2.1e-21 107.1 254 42.5
TWI38G0880 Tripterygium wilfordii HOM05D007784 ORTHO05D008654 2.8e-21 106.7 255 42.7
CsaV3_4G033550 Cucumis sativus L. HOM05D007784 ORTHO05D008654 4.8e-21 105.9 251 47.8
Hma1.2p1_0387F.1_g141980 Hydrangea macrophylla HOM05D007784 ORTHO05D008654 8.1e-21 105.1 264 33.7
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 1.1e-20 104.8 89 66.3
AL1G61530 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 2.4e-20 103.6 304 34.2
MELO3C025600.2 Cucumis melo HOM05D007784 ORTHO05D008654 5.3e-20 102.4 261 47.9
Lalb_Chr01g0006591 Lupinus albus HOM05D007784 ORTHO05D008654 1.5e-19 100.9 268 40.3
AT1G53163 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 9.9e-19 98.2 296 36.8
TPR.G18874 Trifolium pratense HOM05D007784 ORTHO05D008654 1.7e-18 97.4 180 40.0
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 3.8e-18 96.3 279 34.8
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 3.8e-18 96.3 279 34.8
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 3.8e-18 96.3 279 34.8
BraA06t23343Z Brassica rapa HOM05D009851 ORTHO05D008654 3.8e-18 96.3 280 35.7
CARHR043380 Cardamine hirsuta HOM05D009851 ORTHO05D008654 8.4e-18 95.1 308 32.1
Sp1g39710 Schrenkiella parvula HOM05D009851 ORTHO05D008654 1.1e-17 94.7 293 33.1
BcaB07g33353 Brassica carinata HOM05D009851 ORTHO05D008654 1.4e-17 94.4 282 36.9
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 1.4e-17 94.4 280 35.0
Medtr0598s0020 Medicago truncatula HOM05D007784 ORTHO05D008654 3.2e-17 93.2 177 48.0
Carub.0001s4232 Capsella rubella HOM05D009851 ORTHO05D008654 1.6e-16 90.9 290 34.5
Ca_23050_v3 Cicer arietinum L. HOM05D007784 ORTHO05D008654 1.6e-16 90.9 245 39.2
Cc05_g11830 Coffea canephora HOM05D007784 ORTHO05D008654 1.6e-16 90.9 265 36.6
Dinv14932 Davidia involucrata HOM05D007784 ORTHO05D008654 1.6e-16 90.9 86 58.1
Sp3g13450 Schrenkiella parvula HOM05D009851 ORTHO05D008654 1.6e-16 90.9 255 40.4
A05p34230 Brassica napus HOM05D009851 ORTHO05D008654 2.1e-16 90.5 225 42.2
BraA05t22243Z Brassica rapa HOM05D009851 ORTHO05D008654 2.1e-16 90.5 225 42.2
Carub.0003s1490 Capsella rubella HOM05D009851 ORTHO05D008654 4.6e-16 89.4 246 44.3
Aqoxy1G02344 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 6.0e-16 89.0 239 36.8
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 6.0e-16 89.0 253 35.2
C05p51990 Brassica napus HOM05D009851 ORTHO05D008654 6.0e-16 89.0 232 38.8
Aqoxy5G00008 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 7.9e-16 88.6 239 36.8
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 7.9e-16 88.6 255 34.5
BolC5t33884H Brassica oleracea HOM05D009851 ORTHO05D008654 6.7e-15 85.5 228 38.2
Thhalv10012165m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 1.5e-14 84.3 299 31.8
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 2.5e-14 83.6 231 39.4
EL10Ac4g08222 Beta vulgaris HOM05D007784 ORTHO05D008654 4.3e-14 82.8 273 37.4
PGSC0003DMG400012442 Solanum tuberosum HOM05D007784 ORTHO05D008654 5.6e-14 82.4 257 41.6
Rhsim06G0201400 Rhododendron simsii HOM05D007784 ORTHO05D008654 3.7e-13 79.7 257 37.7
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 4.8e-13 79.3 260 33.1
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 6.2e-13 79.0 258 33.3
Sed0023140 Sechium edule HOM05D007784 ORTHO05D008654 6.2e-13 79.0 57 71.9
Thhalv10021913m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 1.8e-12 77.4 247 44.5
BcaB06g29549 Brassica carinata HOM05D009851 ORTHO05D008654 6.9e-12 75.5 250 36.4
MSTRG.15239 Avicennia marina HOM05D007784 ORTHO05D008654 9.0e-12 75.1 256 37.5
TAR627G0175 Trochodendron aralioides HOM05D007784 ORTHO05D008654 2.6e-11 73.6 281 33.1
BcaB03g11679 Brassica carinata HOM05D009851 ORTHO05D008654 5.8e-11 72.4 68 54.4
TAR627G0444 Trochodendron aralioides HOM05D007784 ORTHO05D008654 7.6e-11 72.0 280 34.6
Solyc07g062960.1 Solanum lycopersicum HOM05D007784 ORTHO05D008654 9.9e-11 71.6 238 42.9
Sopen07g031150 Solanum pennellii HOM05D007784 ORTHO05D008654 9.9e-11 71.6 234 42.7
Oeu051079.1 Olea europaea HOM05D007784 ORTHO05D008654 2.9e-10 70.1 249 34.9
PGR083G0236 Punica granatum HOM05D007784 ORTHO05D008654 6.4e-10 68.9 247 27.1
PSO541G4378 Papaver somniferum HOM05D007784 ORTHO05D008654 8.4e-10 68.6 250 36.0
Peaxi162Scf00069g01710 Petunia axillaris HOM05D007784 ORTHO05D008654 1.1e-09 68.2 183 34.4
AUR62019455 Chenopodium quinoa HOM05D007784 ORTHO05D008654 2.4e-09 67.0 216 44.9
AUR62036175 Chenopodium quinoa HOM05D007784 ORTHO05D008654 4.2e-09 66.2 211 30.8
Sc16g0007130 Simmondsia chinensis HOM05D007784 ORTHO05D008654 5.5e-09 65.9 243 30.0
Nn1g06458 Nelumbo nucifera HOM05D007784 ORTHO05D008654 1.2e-08 64.7 253 29.2
Nn1g04167 Nelumbo nucifera HOM05D007784 ORTHO05D008654 1.3e-07 61.2 262 33.2
Eucgr.F03301 Eucalyptus grandis HOM05D007784 ORTHO05D008654 7.4e-06 55.5 116 36.2
Ah.06g184500 Amaranthus hybridus HOM05D007784 ORTHO05D008654 9.6e-06 55.1 187 31.6
SalBow8G3696 Salvia bowleyana HOM05D007784 ORTHO05D008654 9.6e-06 55.1 62 56.5


User provided reference genes

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