Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1072 Acer truncatum HOM05D008427 ORTHO05D010551 4.1e-98 361.3 173 100.0
Atru.chr2.1081 Acer truncatum HOM05D008427 ORTHO05D010551 7.0e-29 131.3 137 49.6
COL.COLO4_03543 Corchorus olitorius HOM05D000886 ORTHO05D000525 1.6e-17 93.6 142 38.7
Prupe.4G202600 Prunus persica HOM05D008427 ORTHO05D010551 4.7e-17 92.0 141 38.3
Atru.chr2.1085 Acer truncatum HOM05D008427 ORTHO05D010551 8.0e-17 91.3 140 37.9
Atru.chr2.1095 Acer truncatum HOM05D008427 ORTHO05D010551 8.0e-17 91.3 152 36.2
Thecc.05G267100 Theobroma cacao HOM05D008427 ORTHO05D010551 1.2e-15 87.4 137 35.8
Atru.chr2.1104 Acer truncatum HOM05D000886 ORTHO05D000525 4.4e-15 85.5 148 35.8
Duzib128G1006 Durio zibethinus HOM05D000886 ORTHO05D000525 4.4e-15 85.5 165 38.2
SHI23918 Sapria himalayana HOM05D008427 ORTHO05D000525 4.4e-15 85.5 141 34.0
Thecc.05G267200 Theobroma cacao HOM05D008427 ORTHO05D010551 9.8e-15 84.3 139 33.8
Potri.013G049000 Populus trichocarpa HOM05D000886 ORTHO05D010551 1.3e-14 84.0 145 35.9
Sabra13G0045300 Salix brachista HOM05D000886 ORTHO05D000525 3.7e-14 82.4 146 34.9
Potri.019G021900 Populus trichocarpa HOM05D008427 ORTHO05D010551 1.1e-13 80.9 142 33.8
Sabra19G0033300 Salix brachista HOM05D008427 ORTHO05D010551 1.4e-13 80.5 143 34.3
COL.COLO4_15529 Corchorus olitorius HOM05D008427 ORTHO05D010551 1.8e-13 80.1 150 39.3
Atru.chr2.1077 Acer truncatum HOM05D008427 ORTHO05D010551 1.6e-12 77.0 138 34.1
FvH4_3g21850 Fragaria vesca HOM05D000886 ORTHO05D010551 1.6e-12 77.0 143 37.1
FAN11G0335 Fragaria x ananassa HOM05D000886 ORTHO05D010551 1.6e-12 77.0 143 37.1
RcHm_v2.0_Chr5g0037631 Rosa chinensis HOM05D008427 ORTHO05D010551 1.3e-11 73.9 142 34.5
Atru.chr2.1092 Acer truncatum HOM05D000886 ORTHO05D010551 3.8e-11 72.4 141 31.2
COL.COLO4_15525 Corchorus olitorius HOM05D000886 ORTHO05D000525 6.5e-11 71.6 91 40.7
COL.COLO4_15532 Corchorus olitorius HOM05D001309 ORTHO05D000385 9.4e-10 67.8 70 40.0
Oeu060772.1 Olea europaea HOM05D000886 ORTHO05D000525 9.4e-10 67.8 136 32.4
Atru.chr2.1087 Acer truncatum HOM05D008427 ORTHO05D010551 1.6e-09 67.0 60 56.7
Atru.chr2.1074 Acer truncatum HOM05D008427 ORTHO05D010551 2.1e-09 66.6 105 35.2
Gohir.A11G245100 Gossypium hirsutum HOM05D000886 ORTHO05D000525 8.0e-09 64.7 150 32.0
QL02p073879 Quercus lobata HOM05D000886 ORTHO05D000525 1.4e-08 63.9 144 27.8
Atru.chr2.1102 Acer truncatum HOM05D008427 ORTHO05D010551 1.8e-08 63.5 88 36.4
Atru.chr1.1367 Acer truncatum HOM05D000886 ORTHO05D000525 2.3e-08 63.2 146 25.3
Lsat_1_v5_gn_9_55780 Lactuca sativa HOM05D000886 ORTHO05D000525 3.0e-08 62.8 149 27.5
Atru.chr2.1098 Acer truncatum HOM05D000886 ORTHO05D010551 4.0e-08 62.4 147 32.0
Atru.chr5.961 Acer truncatum HOM05D000886 ORTHO05D000525 5.2e-08 62.0 153 27.5
Haze_14765 Corylus avellana HOM05D000087 ORTHO05D001941 8.8e-08 61.2 148 27.0
Nitab4.5_0003694g0040 Nicotiana tabacum HOM05D000886 ORTHO05D000525 8.8e-08 61.2 142 26.8
Zm00001eb157800 Zea mays HOM05D000886 ORTHO05D000525 1.2e-07 60.8 145 26.2
Aqoxy2G02686 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 1.5e-07 60.5 142 28.2
Oeu060771.1 Olea europaea HOM05D000886 ORTHO05D000525 1.5e-07 60.5 142 28.2
Prupe.7G019000 Prunus persica HOM05D000886 ORTHO05D000525 2.0e-07 60.1 139 29.5
Manes.08G161704 Manihot esculenta HOM05D000886 ORTHO05D000525 2.6e-07 59.7 130 27.7
MBI18_g35538_MAGBIO Magnolia biondii HOM05D000886 ORTHO05D000525 3.4e-07 59.3 132 30.3
Rhsim04G0069800 Rhododendron simsii HOM05D000886 ORTHO05D000525 3.4e-07 59.3 124 30.6
Lj8P110T28 Lonicera japonica HOM05D000886 ORTHO05D000525 4.4e-07 58.9 142 30.3
Lj1g0006752 Lotus japonicus HOM05D000886 ORTHO05D000525 4.4e-07 58.9 137 28.5
ATR0693G315 Amborella trichopoda HOM05D000886 ORTHO05D000525 5.7e-07 58.5 139 28.8
Gohir.D07G133800 Gossypium hirsutum HOM05D000886 ORTHO05D000525 5.7e-07 58.5 165 27.9
Lsat_1_v5_gn_9_55760 Lactuca sativa HOM05D000886 ORTHO05D000525 5.7e-07 58.5 168 26.8
PGSC0003DMG400042198 Solanum tuberosum HOM05D000886 ORTHO05D000525 5.7e-07 58.5 149 24.8
EL10Ac3g07294 Beta vulgaris HOM05D000886 ORTHO05D000525 9.8e-07 57.8 149 29.5
CAN.G208.12 Capsicum annuum HOM05D000886 ORTHO05D000525 1.3e-06 57.4 141 25.5
AUR62024614 Chenopodium quinoa HOM05D000886 ORTHO05D000525 2.2e-06 56.6 132 29.5
Solyc01g100670.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 2.2e-06 56.6 149 25.5
Solyc01g100680.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 2.2e-06 56.6 147 27.9
Aqoxy2G02679 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 2.8e-06 56.2 148 27.0
Gorai.001G145100 Gossypium raimondii HOM05D000886 ORTHO05D000525 2.8e-06 56.2 165 27.3
Rhsim04G0069900 Rhododendron simsii HOM05D000886 ORTHO05D000525 2.8e-06 56.2 103 32.0
THA.LOC104826796 Tarenaya hassleriana HOM05D008427 ORTHO05D010551 2.8e-06 56.2 158 27.2
AUR62011771 Chenopodium quinoa HOM05D018970 ORTHO05D019524 4.9e-06 55.5 137 32.1
Nitab4.5_0000787g0060 Nicotiana tabacum HOM05D000886 ORTHO05D000525 4.9e-06 55.5 148 26.4
Nitab4.5_0006171g0080 Nicotiana tabacum HOM05D000886 ORTHO05D000525 4.9e-06 55.5 127 28.3
Os04g0225100 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 4.9e-06 55.5 137 28.5
Nn3g21760 Nelumbo nucifera HOM05D000886 ORTHO05D000525 6.3e-06 55.1 141 29.8
THA.LOC104816634 Tarenaya hassleriana HOM05D008427 ORTHO05D010551 6.3e-06 55.1 136 27.9
Thecc.01G317100 Theobroma cacao HOM05D000886 ORTHO05D000525 6.3e-06 55.1 147 28.6
Carub.0006s0533 Capsella rubella HOM05D008427 ORTHO05D010551 8.3e-06 54.7 127 28.3
TPR.G31753 Trifolium pratense HOM05D000886 ORTHO05D000525 8.3e-06 54.7 155 29.0


User provided reference genes

Program Settings