Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 2.4e-278 961.4 465 100.0
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 1.1e-177 627.1 432 70.6
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.3e-175 619.4 432 71.1
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.5e-174 615.9 433 70.7
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.6e-173 613.2 433 69.1
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.4e-169 600.1 429 67.1
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.2e-169 599.0 433 68.6
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 2.7e-168 595.9 428 69.2
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.3e-167 592.8 431 68.4
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 3.9e-167 592.0 417 68.1
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 5.1e-167 591.7 427 67.2
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 6.6e-167 591.3 428 67.3
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 8.6e-167 590.9 428 67.8
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 9.5e-166 587.4 429 66.4
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.6e-165 586.6 423 67.6
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 2.1e-165 586.3 434 65.9
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 3.6e-165 585.5 417 68.1
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 3.6e-165 585.5 427 67.2
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 4.7e-165 585.1 429 67.6
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 6.2e-165 584.7 415 70.6
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 8.1e-165 584.3 420 66.4
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.1e-164 583.9 434 67.1
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.1e-164 583.9 418 68.7
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.8e-164 583.2 433 65.6
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 3.1e-164 582.4 417 65.5
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 5.2e-164 581.6 428 64.7
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 5.2e-164 581.6 428 66.8
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 6.8e-164 581.3 425 65.9
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.2e-163 580.5 428 66.4
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.2e-163 580.5 428 66.4
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 1.5e-163 580.1 428 66.6
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.5e-163 580.1 428 64.7
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 3.4e-163 578.9 430 66.3
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 4.4e-163 578.6 420 66.4
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 9.9e-163 577.4 428 66.1
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.3e-162 577.0 428 66.1
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.7e-162 576.6 428 66.1
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.7e-162 576.6 417 66.9
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.9e-162 575.9 428 64.3
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 6.4e-162 574.7 426 66.4
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 8.4e-162 574.3 416 66.3
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.4e-161 573.5 415 66.5
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.9e-161 573.2 426 64.8
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 2.4e-161 572.8 421 64.8
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 3.2e-161 572.4 415 65.1
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 5.4e-161 571.6 423 66.7
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.4e-161 571.6 430 64.9
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 9.2e-161 570.9 415 68.4
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 1.2e-160 570.5 415 66.0
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 2.7e-160 569.3 428 62.6
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 2.7e-160 569.3 428 62.4
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 3.5e-160 568.9 417 66.2
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 6.0e-160 568.2 426 62.7
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 1.0e-159 567.4 430 63.7
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 1.7e-159 566.6 426 64.1
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.0e-159 565.8 423 63.6
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 1.5e-158 563.5 426 63.6
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 1.5e-158 563.5 415 63.9
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 1.9e-158 563.1 423 63.4
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.9e-158 563.1 451 62.3
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.5e-158 562.8 425 64.5
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 5.6e-158 561.6 428 65.2
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 5.6e-158 561.6 417 65.5
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.2e-157 560.5 432 63.2
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 4.7e-157 558.5 411 65.5
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 4.7e-157 558.5 415 65.5
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 6.2e-157 558.1 423 62.9
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.4e-156 557.0 439 61.5
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 4.0e-156 555.4 439 61.3
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 5.2e-156 555.1 424 65.1
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 6.8e-156 554.7 433 62.6
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 6.8e-156 554.7 426 63.1
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 8.9e-156 554.3 426 62.0
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 8.9e-156 554.3 431 63.8
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.2e-155 553.9 431 62.6
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 2.0e-155 553.1 426 62.4
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 4.4e-155 552.0 415 63.6
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 3.8e-154 548.9 423 62.9
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 4.9e-154 548.5 420 63.6
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 8.4e-154 547.7 432 61.6
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 1.1e-153 547.4 434 61.5
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.4e-153 547.0 410 63.9
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.4e-153 547.0 407 65.8
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 1.4e-153 547.0 428 62.4
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 3.2e-153 545.8 415 63.9
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 3.2e-153 545.8 425 62.4
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 4.2e-153 545.4 424 62.3
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 4.2e-153 545.4 384 69.3
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.4e-153 545.0 415 63.9
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 7.1e-153 544.7 410 63.9
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.2e-152 543.9 407 64.6
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 2.1e-152 543.1 415 63.1
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 2.1e-152 543.1 415 63.1
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 2.1e-152 543.1 415 63.6
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 2.1e-152 543.1 459 59.5
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.7e-152 542.7 437 60.4
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 3.5e-152 542.3 427 61.4
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 6.0e-152 541.6 418 62.9
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.3e-151 540.4 415 62.9
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 8.7e-151 537.7 424 61.8
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.5e-150 537.0 417 63.1
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.5e-150 537.0 417 63.1
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.5e-150 537.0 417 63.1
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.3e-150 535.4 437 60.0
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 1.3e-149 533.9 415 62.7
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.2e-149 531.6 455 59.1
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.1e-148 530.8 415 62.4
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.4e-148 530.4 384 65.9
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.4e-148 529.6 383 66.1
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.5e-147 526.9 520 52.1
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 2.2e-146 523.1 444 57.9
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 2.9e-146 522.7 457 56.5
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.9e-146 521.9 428 60.5
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 4.9e-146 521.9 382 65.2
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 1.4e-145 520.4 424 61.1
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.9e-145 520.0 433 59.1
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.3e-143 513.1 400 61.8
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 1.9e-142 510.0 447 57.5
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 2.5e-142 509.6 420 61.4
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 2.5e-142 509.6 434 57.8
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 4.3e-142 508.8 426 58.9
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 4.3e-142 508.8 462 56.7
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 7.3e-142 508.1 429 58.3
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.6e-141 505.8 443 57.6
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 4.5e-139 498.8 448 58.0
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.8e-138 495.7 602 46.3
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 3.8e-138 495.7 385 62.6
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 4.9e-138 495.4 515 51.3
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.2e-136 490.7 389 60.2
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 6.0e-136 488.4 426 60.8
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.3e-130 470.7 431 57.5
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.9e-130 469.5 399 59.9
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.1e-129 467.6 428 56.3
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.9e-118 430.3 401 55.4
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.2e-115 421.0 410 50.2
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 1.5e-115 420.6 447 48.3
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.1e-113 414.5 429 48.3
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.6e-112 409.5 390 53.6
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 4.3e-110 402.5 402 49.3
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 4.1e-108 396.0 433 50.6
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 6.1e-104 382.1 405 47.9
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.0e-95 354.8 296 60.1
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.3e-93 347.8 492 41.1
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 8.2e-93 345.1 248 64.9
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 7.2e-89 332.0 300 58.0
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 4.4e-78 296.2 184 73.4
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 4.9e-69 266.2 260 54.6
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 7.0e-68 262.3 201 65.7
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 2.1e-48 197.6 179 53.6
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 7.6e-38 162.5 117 61.5
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 3.2e-36 157.1 208 38.9
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.3e-34 151.8 150 54.7
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 7.1e-28 129.4 151 48.3
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 9.3e-28 129.0 81 71.6
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 9.6e-25 119.0 83 65.1
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 4.8e-24 116.7 414 26.3
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 3.1e-23 114.0 71 74.6
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 3.4e-22 110.5 99 50.5
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 2.2e-21 107.8 55 92.7
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 2.9e-21 107.5 70 68.6
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.2e-19 102.1 62 75.8
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 5.1e-18 96.7 70 72.9
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 1.1e-15 89.0 57 77.2
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.8e-15 88.2 57 77.2
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.9e-13 80.9 46 80.4
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.8e-10 71.6 45 71.1
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 2.1e-08 64.7 39 76.9
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 9.0e-07 59.3 40 65.0


User provided reference genes

Program Settings