Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 5.9e-252 873.6 415 100.0
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 5.9e-252 873.6 415 100.0
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 4.5e-143 511.9 442 58.4
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 4.5e-143 511.9 442 58.4
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 2.3e-142 509.6 433 60.3
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 6.6e-142 508.1 432 60.9
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 1.7e-137 493.4 436 57.6
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 4.9e-137 491.9 418 60.5
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 2.4e-136 489.6 445 56.2
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 5.4e-136 488.4 457 56.2
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 7.0e-136 488.0 464 54.5
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 9.2e-136 487.6 445 56.4
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 9.2e-136 487.6 445 56.6
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 2.0e-135 486.5 484 52.5
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.6e-135 485.3 445 56.6
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 5.9e-135 485.0 466 53.4
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 7.8e-135 484.6 443 55.5
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.3e-134 483.8 443 55.3
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.7e-132 475.3 440 54.8
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 4.7e-132 475.3 436 55.7
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 8.0e-132 474.6 440 55.0
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 8.0e-132 474.6 394 61.7
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 2.3e-131 473.0 439 54.0
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 3.1e-131 472.6 436 56.7
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 2.6e-130 469.5 455 53.0
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 1.7e-129 466.8 422 56.6
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 8.3e-129 464.5 452 52.4
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 1.1e-128 464.2 431 55.7
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.4e-128 463.8 456 53.1
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 2.4e-128 463.0 444 54.3
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 7.0e-128 461.5 466 53.4
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 9.2e-128 461.1 445 53.7
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 9.2e-128 461.1 438 54.3
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.3e-126 457.2 445 54.6
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 5.0e-126 455.3 446 54.0
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 1.1e-125 454.1 446 53.8
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 1.5e-125 453.8 457 52.5
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 2.5e-125 453.0 411 55.7
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 3.3e-125 452.6 453 51.9
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 3.3e-125 452.6 450 51.6
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 3.3e-125 452.6 445 52.1
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 2.0e-122 443.4 439 54.2
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 9.2e-120 434.5 472 50.2
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 3.9e-118 429.1 389 55.8
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 3.3e-117 426.0 433 52.9
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 3.3e-117 426.0 439 51.5
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 5.6e-117 425.2 429 53.4
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 3.6e-116 422.5 356 60.4
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 6.8e-115 418.3 409 52.6
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.6e-114 416.4 437 49.2
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 3.4e-114 416.0 428 50.7
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 4.4e-114 415.6 472 48.7
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 7.6e-114 414.8 435 51.0
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 2.9e-113 412.9 428 51.2
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 3.2e-112 409.5 452 49.6
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 3.2e-112 409.5 417 52.5
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 1.6e-111 407.1 351 55.8
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 2.3e-110 403.3 438 50.2
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 3.0e-110 402.9 417 52.3
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 6.6e-110 401.7 425 50.4
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 6.6e-110 401.7 440 47.7
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.1e-109 401.0 400 51.5
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 2.5e-109 399.8 436 48.6
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.8e-108 396.4 437 50.1
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.8e-107 393.7 438 48.4
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 1.8e-107 393.7 435 48.7
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 1.8e-107 393.7 435 49.4
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 5.2e-107 392.1 428 50.2
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 5.2e-107 392.1 420 50.2
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 2.0e-106 390.2 438 47.0
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 2.6e-106 389.8 425 49.6
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 3.4e-106 389.4 353 55.8
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 3.4e-106 389.4 432 47.7
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 9.9e-106 387.9 432 50.5
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 2.9e-105 386.3 435 48.3
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 2.9e-105 386.3 435 48.5
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 6.4e-105 385.2 438 47.5
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 8.4e-105 384.8 353 54.1
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 5.4e-104 382.1 424 50.2
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 1.2e-103 380.9 417 48.9
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.1e-103 380.2 479 44.7
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 1.7e-102 377.1 410 50.2
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 2.3e-102 376.7 300 61.7
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 5.1e-102 375.6 381 51.2
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 6.6e-102 375.2 424 48.3
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 8.7e-102 374.8 451 47.9
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 2.5e-101 373.2 382 50.5
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 2.4e-99 366.7 418 48.3
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 2.0e-98 363.6 418 49.5
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.6e-98 363.2 480 44.0
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 7.6e-98 361.7 420 46.9
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 1.3e-97 360.9 418 49.5
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.9e-97 359.8 371 51.5
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 3.2e-96 356.3 428 45.3
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.6e-95 354.0 422 47.9
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 5.1e-94 349.0 422 46.9
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 1.6e-92 344.0 417 46.3
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 8.4e-89 331.6 506 40.1
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 1.9e-88 330.5 347 47.8
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 4.3e-85 319.3 433 44.3
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 2.4e-83 313.5 317 51.4
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.3e-81 307.8 420 43.6
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.9e-81 306.6 480 38.5
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 2.3e-78 297.0 368 45.1
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 7.4e-77 292.0 294 52.4
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.3e-76 291.2 281 53.7
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.2e-73 280.4 442 38.7
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 2.7e-71 273.5 413 39.0
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 3.0e-70 270.0 318 47.2
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.3e-69 266.5 399 38.1
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.6e-68 264.2 424 36.8
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 1.4e-67 261.2 333 44.4
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.2e-65 253.8 501 32.7
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 8.2e-60 235.3 548 30.7
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.4e-59 233.8 377 37.9
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 1.9e-56 224.2 330 40.0
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.0e-54 218.4 231 51.1
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 1.6e-47 194.5 142 68.3
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 1.7e-44 184.5 267 41.2
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 4.1e-43 179.9 553 26.0
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 2.0e-42 177.6 219 46.6
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.2e-40 169.9 145 53.1
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 6.8e-38 162.5 154 50.6
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.8e-35 154.5 265 34.3
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.1e-35 153.3 154 48.1
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 1.0e-30 138.7 114 58.8
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 2.3e-30 137.5 200 42.0
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 1.7e-25 121.3 100 60.0
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.3e-22 110.9 238 30.3
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 3.6e-15 87.0 152 39.5
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 5.2e-14 83.2 57 64.9
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 3.2e-11 73.9 55 61.8
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 9.2e-11 72.4 41 78.0
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 8.6e-09 65.9 52 51.9


User provided reference genes

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