Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1359 Acer truncatum HOM05D004958 ORTHO05D005983 1.5e-107 392.9 208 100.0
Atru.chr12.1358 Acer truncatum HOM05D004958 ORTHO05D005983 3.2e-89 332.0 251 74.5
Manes.01G066700 Manihot esculenta HOM05D004958 ORTHO05D005983 1.4e-55 220.3 249 53.8
Gorai.007G022300 Gossypium raimondii HOM05D004958 ORTHO05D005983 3.1e-55 219.2 215 58.1
Thecc.03G271700 Theobroma cacao HOM05D004958 ORTHO05D005983 1.2e-54 217.2 252 53.6
Potri.001G110000 Populus trichocarpa HOM05D004958 ORTHO05D005983 1.5e-54 216.9 151 74.8
Ciclev10021851m.g Citrus clementina HOM05D004958 ORTHO05D005983 4.4e-54 215.3 207 59.9
Duzib068G0251 Durio zibethinus HOM05D004958 ORTHO05D005983 4.4e-54 215.3 256 52.3
Gohir.D11G021000 Gossypium hirsutum HOM05D004958 ORTHO05D005983 4.4e-54 215.3 253 53.4
Gohir.A11G021300 Gossypium hirsutum HOM05D004958 ORTHO05D005983 2.2e-53 213.0 251 53.8
FvH4_7g07500 Fragaria vesca HOM05D004958 ORTHO05D005983 1.4e-52 210.3 233 54.1
FAN11G1832 Fragaria x ananassa HOM05D000097 ORTHO05D005983 1.9e-52 209.9 216 56.5
FvH4_3g25070 Fragaria vesca HOM05D000097 ORTHO05D005983 4.1e-52 208.8 223 54.3
FAN06G2073 Fragaria x ananassa HOM05D004958 ORTHO05D005983 7.0e-52 208.0 233 53.6
FAN10G1939 Fragaria x ananassa HOM05D004958 ORTHO05D005983 7.0e-52 208.0 233 53.6
Sed0017231 Sechium edule HOM05D004958 ORTHO05D005983 3.5e-51 205.7 243 51.0
FAN03G3010 Fragaria x ananassa HOM05D004958 ORTHO05D005983 6.0e-51 204.9 233 53.2
FAN01G2068 Fragaria x ananassa HOM05D004958 ORTHO05D005983 7.8e-51 204.5 220 54.5
PGR031G1609 Punica granatum HOM05D004958 ORTHO05D005983 1.3e-50 203.8 248 50.8
CSS0008368 Camellia sinensis var. sinensis HOM05D004958 ORTHO05D005983 8.6e-50 201.1 249 48.2
Hma1.2p1_0514F.1_g170070 Hydrangea macrophylla HOM05D004958 ORTHO05D005983 1.5e-49 200.3 249 50.2
ClCG08G000800 Citrullus lanatus HOM05D004958 ORTHO05D005983 2.5e-49 199.5 251 48.6
Hund11528 Selenicereus undatus HOM05D004958 ORTHO05D005983 3.3e-49 199.1 244 50.4
Nn6g34244 Nelumbo nucifera HOM05D004958 ORTHO05D005983 2.8e-48 196.1 230 50.4
MELO3C019927.2 Cucumis melo HOM05D004958 ORTHO05D005983 1.1e-47 194.1 250 46.8
VMungo0331G1538 Vigna mungo HOM05D004958 ORTHO05D005983 1.4e-47 193.7 249 45.8
Phvul.010G049100 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 3.1e-47 192.6 238 47.5
RcHm_v2.0_Chr5g0045251 Rosa chinensis HOM05D004958 ORTHO05D005983 3.1e-47 192.6 150 65.3
Phvul.009G080900 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 6.8e-47 191.4 238 47.1
Migut.E01294 Erythranthe guttata HOM05D004958 ORTHO05D005983 1.2e-46 190.7 243 49.4
DCAR_008420 Daucus carota HOM05D004958 ORTHO05D005983 2.0e-46 189.9 150 64.0
Glyma.07G082900 Glycine max HOM05D004958 ORTHO05D005983 2.0e-46 189.9 244 47.5
GSVIVG01019856001 Vitis vinifera HOM05D004958 ORTHO05D005983 4.4e-46 188.7 150 64.7
Lalb_Chr07g0189581 Lupinus albus HOM05D004958 ORTHO05D005983 5.8e-46 188.3 249 47.4
Aqoxy5G02043 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 7.5e-46 188.0 242 47.9
Prupe.6G131000 Prunus persica HOM05D004958 ORTHO05D005983 7.5e-46 188.0 200 53.5
Eucgr.D01919 Eucalyptus grandis HOM05D004958 ORTHO05D005983 1.7e-45 186.8 151 60.9
Lsat_1_v5_gn_6_87641 Lactuca sativa HOM05D004958 ORTHO05D005983 2.2e-45 186.4 152 61.8
Lalb_Chr12g0208371 Lupinus albus HOM05D004958 ORTHO05D005983 4.9e-45 185.3 251 47.4
Lalb_Chr12g0208451 Lupinus albus HOM05D004958 ORTHO05D005983 4.9e-45 185.3 251 47.4
MD03G1146200 Malus domestica HOM05D004958 ORTHO05D005983 4.9e-45 185.3 244 48.8
Nitab4.5_0002553g0040 Nicotiana tabacum HOM05D004958 ORTHO05D005983 8.3e-45 184.5 213 47.4
Solyc06g073120.4 Solanum lycopersicum HOM05D004958 ORTHO05D005983 8.3e-45 184.5 246 46.7
Lj3g0000848 Lotus japonicus HOM05D004958 ORTHO05D005983 1.9e-44 183.3 234 47.4
PGSC0003DMG400026921 Solanum tuberosum HOM05D004958 ORTHO05D005983 1.9e-44 183.3 252 46.4
Ca_05359_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 3.2e-44 182.6 209 49.3
Sopen06g029470 Solanum pennellii HOM05D004958 ORTHO05D005983 5.4e-44 181.8 250 46.0
Peaxi162Scf01294g00034 Petunia axillaris HOM05D004958 ORTHO05D005983 7.0e-44 181.4 244 47.5
Actinidia27408 Actinidia chinensis HOM05D004958 ORTHO05D005983 9.2e-44 181.0 150 62.7
CsaV3_5G039810 Cucumis sativus L. HOM05D004958 ORTHO05D005983 9.2e-44 181.0 275 42.9
Nitab4.5_0001586g0220 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.2e-43 180.6 243 44.9
EL10Ac5g12729 Beta vulgaris HOM05D004958 ORTHO05D005983 1.6e-43 180.3 250 44.0
Nitab4.5_0003994g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 4.6e-43 178.7 152 59.9
Glyma.03G021100 Glycine max HOM05D004958 ORTHO05D005983 6.0e-43 178.3 266 43.6
AL1G24110 Arabidopsis lyrata HOM05D004958 ORTHO05D005983 1.3e-42 177.2 144 63.2
AT1G12650 Arabidopsis thaliana HOM05D004958 ORTHO05D005983 1.3e-42 177.2 144 62.5
Ca_24641_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 1.3e-42 177.2 244 45.9
Nitab4.5_0003113g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.3e-42 177.2 150 58.7
vmacro13919 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 2.3e-42 176.4 245 44.9
arahy.Tifrunner.gnm1.ann1.BCQ50G Arachis hypogaea HOM05D004958 ORTHO05D005983 3.9e-42 175.6 197 50.8
COL.COLO4_09338 Corchorus olitorius HOM05D001926 ORTHO05D002121 6.6e-42 174.9 217 50.2
PSO782G2900 Papaver somniferum HOM05D004958 ORTHO05D005983 6.6e-42 174.9 151 60.9
MSTRG.1893 Avicennia marina HOM05D004958 ORTHO05D005983 8.6e-42 174.5 145 62.1
ATR0757G162 Amborella trichopoda HOM05D004958 ORTHO05D005983 1.1e-41 174.1 224 46.4
THA.LOC104823571 Tarenaya hassleriana HOM05D004958 ORTHO05D005983 1.5e-41 173.7 201 51.7
PSO478G4928 Papaver somniferum HOM05D004958 ORTHO05D005983 1.9e-41 173.3 151 60.9
Medtr5g058150 Medicago truncatula HOM05D004958 ORTHO05D005983 2.5e-41 172.9 237 43.9
Prupe.8G125000 Prunus persica HOM05D004958 ORTHO05D005983 2.5e-41 172.9 210 51.4
Sp1g11240 Schrenkiella parvula HOM05D004958 ORTHO05D005983 3.3e-41 172.6 152 59.9
BcaB08g34261 Brassica carinata HOM05D004958 ORTHO05D005983 7.3e-41 171.4 152 60.5
SGA_v2.0_scaffold196G40881 Striga asiatica HOM05D004958 ORTHO05D005983 9.5e-41 171.0 145 61.4
Carub.0001s1234 Capsella rubella HOM05D004958 ORTHO05D005983 1.2e-40 170.6 240 46.2
BolC8t52265H Brassica oleracea HOM05D004958 ORTHO05D005983 1.6e-40 170.2 145 60.0
BraA09t41722Z Brassica rapa HOM05D004958 ORTHO05D005983 1.6e-40 170.2 145 60.0
CAN.G65.155 Capsicum annuum HOM05D004958 ORTHO05D005983 1.6e-40 170.2 150 58.7
MBI11_g40802_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.1e-40 169.9 157 56.7
CARHR012940 Cardamine hirsuta HOM05D004958 ORTHO05D005983 2.8e-40 169.5 145 59.3
A09p63740 Brassica napus HOM05D004958 ORTHO05D005983 3.6e-40 169.1 145 59.3
Ah.12g057600 Amaranthus hybridus HOM05D004958 ORTHO05D005983 4.7e-40 168.7 150 56.0
TPR.G27805 Trifolium pratense HOM05D004958 ORTHO05D005983 6.2e-40 168.3 252 43.7
TWI81G1011 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 6.2e-40 168.3 215 49.8
Psat0s646g0120 Pisum sativum HOM05D004958 ORTHO05D005983 1.4e-39 167.2 247 41.3
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 1.8e-39 166.8 152 57.9
Os09g0525200 Oryza sativa ssp. japonica HOM05D004958 ORTHO05D005983 2.3e-39 166.4 211 44.1
ECA240G3664 Erigeron canadensis HOM05D004958 ORTHO05D005983 4.0e-39 165.6 151 57.0
MBI11_g41124_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.2e-38 164.1 161 54.0
MBI11_g47761_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.2e-38 164.1 150 56.0
HPP92_003759 Vanilla planifolia HOM05D004958 ORTHO05D005983 2.0e-38 163.3 225 44.0
MBI11_g41127_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 4.4e-38 162.2 205 47.3
MBI11_g31491_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 9.9e-38 161.0 163 54.0
Cc08_g14020 Coffea canephora HOM05D004958 ORTHO05D005983 2.9e-37 159.5 218 46.3
AUR62017291 Chenopodium quinoa HOM05D004958 ORTHO05D005983 4.9e-37 158.7 150 55.3
BcaC07g41688 Brassica carinata HOM05D004958 ORTHO05D005983 8.3e-37 157.9 138 59.4
Medtr6g075250 Medicago truncatula HOM05D004958 ORTHO05D005983 4.6e-35 152.1 151 53.0
Zm00001eb103160 Zea mays HOM05D004958 ORTHO05D005983 1.3e-34 150.6 211 41.7
SEGI_09748 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 3.9e-34 149.1 145 52.4
FAN21G2287 Fragaria x ananassa HOM05D000097 ORTHO05D000041 5.6e-33 145.2 118 65.3
Cfa012106 Carpinus fangiana HOM05D004958 ORTHO05D005983 2.8e-32 142.9 261 39.1
Aa31LG1G2030 Aethionema arabicum HOM05D004958 ORTHO05D005983 1.1e-31 141.0 145 53.8
SalBow7G2511 Salvia bowleyana HOM05D004958 ORTHO05D005983 5.2e-31 138.7 129 57.4
Rhsim07G0094600 Rhododendron simsii HOM05D004958 ORTHO05D005983 8.9e-31 137.9 117 59.8
Thhalv10008688m.g Eutrema salsugineum HOM05D004958 ORTHO05D005983 2.0e-30 136.7 118 61.9
Mapoly0004s0034 Marchantia polymorpha HOM05D004958 ORTHO05D005983 7.6e-30 134.8 229 37.6
Pp3c15_19260 Physcomitrium patens HOM05D004958 ORTHO05D005983 7.6e-30 134.8 145 49.0
Haze_20475 Corylus avellana HOM05D004958 ORTHO05D005983 8.4e-29 131.3 306 35.6
AagrBONN_evm.TU.Sc2ySwM_362.2285 Anthoceros agrestis HOM05D004958 ORTHO05D005983 1.9e-28 130.2 149 45.6
MD11G1165500 Malus domestica HOM05D004958 ORTHO05D005983 1.9e-28 130.2 298 35.6
SMO228G0196 Selaginella moellendorffii HOM05D004958 ORTHO05D005983 1.9e-28 130.2 148 46.6
vmacro12796 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 1.6e-27 127.1 211 38.4
CiPaw.12G097900 Carya illinoinensis HOM05D004958 ORTHO05D005983 6.0e-27 125.2 233 37.3
Sabra01G0083200 Salix brachista HOM05D004958 ORTHO05D005983 2.3e-26 123.2 139 51.1
QL12p017317 Quercus lobata HOM05D004958 ORTHO05D005983 3.0e-26 122.9 222 38.7
unitig_899.g14861 Utricularia gibba HOM05D004958 ORTHO05D005983 4.3e-25 119.0 215 39.1
Sc22g0000230 Simmondsia chinensis HOM05D004958 ORTHO05D005983 9.6e-25 117.9 100 61.0
MBI04_g02075_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.1e-24 116.7 205 38.5
AUR62010651 Chenopodium quinoa HOM05D004958 ORTHO05D005983 4.0e-23 112.5 217 35.5
Aqoxy60s002 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 1.3e-21 107.5 132 50.0
Dinv39007 Davidia involucrata HOM05D004958 ORTHO05D005983 1.3e-21 107.5 159 44.7
Zm00001eb297680 Zea mays HOM05D004958 ORTHO05D005983 3.5e-19 99.4 92 54.3
MBI11_g32389_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 6.0e-19 98.6 183 39.9
Phvul.009G247000 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.0e-18 97.8 193 36.8
CBR_g12215 Chara braunii HOM05D004958 ORTHO05D005983 1.5e-17 94.0 151 37.7
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 4.8e-16 89.0 76 60.5
CDE02G4341 Ceratophyllum demersum HOM05D004958 ORTHO05D005983 1.1e-15 87.8 75 54.7
PRCOL_00004135 Prasinoderma coloniale HOM05D004958 ORTHO05D005983 1.4e-15 87.4 140 34.3
SEGI_22925 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 3.1e-15 86.3 84 54.8
Cre09.g401663 Chlamydomonas reinhardtii HOM05D004958 ORTHO05D005983 4.0e-15 85.9 148 38.5
Eucgr.L01965 Eucalyptus grandis HOM05D004958 ORTHO05D005983 9.0e-15 84.7 61 62.3
MBI11_g12655_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.2e-11 74.3 137 37.2
MBI11_g47763_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 7.9e-11 71.6 124 36.3
Cfa023436 Carpinus fangiana HOM05D004958 ORTHO05D005983 1.8e-10 70.5 140 30.0
Cpa.g.sc53.73 Carica papaya HOM05D004958 ORTHO05D005983 2.3e-10 70.1 49 69.4
FAN15G1616 Fragaria x ananassa HOM05D004958 ORTHO05D005983 9.6e-09 64.7 47 66.0
BcaB03g13174 Brassica carinata HOM05D004958 ORTHO05D005983 1.1e-07 61.2 65 53.8
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-07 60.5 78 50.0


User provided reference genes

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