Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2079 Acer truncatum HOM05D007301 ORTHO05D002389 4.3e-156 554.7 295 100.0
Atru.chr10.2091 Acer truncatum HOM05D007301 ORTHO05D002389 9.8e-124 447.2 295 82.7
Atru.chr10.2080 Acer truncatum HOM05D007301 ORTHO05D002389 3.1e-85 319.3 305 61.0
Ciclev10016236m.g Citrus clementina HOM05D007301 ORTHO05D002389 2.2e-51 206.8 295 46.4
Manes.16G015600 Manihot esculenta HOM05D007301 ORTHO05D002389 1.3e-43 181.0 292 41.1
Prupe.4G030800 Prunus persica HOM05D007301 ORTHO05D002389 1.6e-41 174.1 318 39.9
Potri.011G032700 Populus trichocarpa HOM05D007301 ORTHO05D002389 4.3e-39 166.0 333 43.2
Phvul.006G195200 Phaseolus vulgaris HOM05D007301 ORTHO05D002389 1.7e-38 164.1 312 36.9
Haze_06650 Corylus avellana HOM05D007301 ORTHO05D002389 1.2e-36 157.9 296 38.9
Haze_06639 Corylus avellana HOM05D007301 ORTHO05D002389 3.4e-36 156.4 296 38.5
QL05p077842 Quercus lobata HOM05D007301 ORTHO05D002389 5.0e-35 152.5 306 36.3
Cfa000294 Carpinus fangiana HOM05D007301 ORTHO05D002389 1.1e-34 151.4 304 37.5
TWI63G0057 Tripterygium wilfordii HOM05D007301 ORTHO05D002389 1.1e-34 151.4 302 37.4
Glyma.13G250000 Glycine max HOM05D007301 ORTHO05D002389 1.9e-34 150.6 320 35.6
Gohir.D06G126100 Gossypium hirsutum HOM05D007301 ORTHO05D002389 2.5e-34 150.2 217 41.9
Gorai.010G147000 Gossypium raimondii HOM05D007301 ORTHO05D002389 5.5e-34 149.1 217 41.9
arahy.Tifrunner.gnm1.ann1.1PF2AY Arachis hypogaea HOM05D007301 ORTHO05D002389 9.4e-34 148.3 327 41.6
Sabra11G0025900 Salix brachista HOM05D007301 ORTHO05D002389 1.4e-32 144.4 307 41.0
PGSC0003DMG400021709 Solanum tuberosum HOM05D007301 ORTHO05D002389 2.3e-32 143.7 245 38.4
Solyc02g079780.1 Solanum lycopersicum HOM05D007301 ORTHO05D002389 6.7e-32 142.1 245 39.2
Sopen02g024550 Solanum pennellii HOM05D007301 ORTHO05D002389 6.7e-32 142.1 245 40.0
COL.COLO4_31668 Corchorus olitorius HOM05D000687 ORTHO05D002389 1.1e-31 141.4 233 41.6
MD05G1334500 Malus domestica HOM05D007301 ORTHO05D002389 1.5e-31 141.0 319 38.6
Cpa.g.sc871.4 Carica papaya HOM05D007301 ORTHO05D002389 2.0e-31 140.6 309 34.6
Nitab4.5_0003045g0050 Nicotiana tabacum HOM05D007301 ORTHO05D002389 2.6e-31 140.2 316 34.5
CANSAT56G1725 Cannabis sativa HOM05D007301 ORTHO05D002389 5.7e-31 139.0 326 34.4
ClCG03G005250 Citrullus lanatus HOM05D007301 ORTHO05D002389 5.7e-31 139.0 240 39.6
Glyma.15G064200 Glycine max HOM05D007301 ORTHO05D002389 2.2e-30 137.1 220 39.1
VMungo0540G0977 Vigna mungo HOM05D007301 ORTHO05D002389 2.2e-30 137.1 224 39.7
Lalb_Chr15g0090181 Lupinus albus HOM05D007301 ORTHO05D002389 1.1e-29 134.8 310 33.2
FvH4_3g03190 Fragaria vesca HOM05D007301 ORTHO05D002389 1.4e-29 134.4 321 36.1
MELO3C002521.2 Cucumis melo HOM05D007301 ORTHO05D002389 7.0e-29 132.1 239 40.6
Ca_00213_v3 Cicer arietinum L. HOM05D007301 ORTHO05D002389 2.6e-28 130.2 318 33.6
Cc02_g11930 Coffea canephora HOM05D007301 ORTHO05D002389 2.6e-28 130.2 336 31.5
Eucgr.E03612 Eucalyptus grandis HOM05D007301 ORTHO05D002389 4.5e-28 129.4 218 39.9
FAN25G3745 Fragaria x ananassa HOM05D007301 ORTHO05D002389 4.5e-28 129.4 312 36.2
Thecc.06G206100 Theobroma cacao HOM05D007301 ORTHO05D002389 1.7e-27 127.5 317 40.4
Sed0025707 Sechium edule HOM05D007301 ORTHO05D002389 2.2e-27 127.1 215 37.7
FAN21G3361 Fragaria x ananassa HOM05D007301 ORTHO05D002389 2.9e-27 126.7 319 35.4
Medtr2g010980 Medicago truncatula HOM05D007301 ORTHO05D002389 1.1e-26 124.8 313 30.7
RcHm_v2.0_Chr5g0004821 Rosa chinensis HOM05D007301 ORTHO05D002389 1.1e-26 124.8 307 35.5
CiPaw.09G153900 Carya illinoinensis HOM05D007301 ORTHO05D002389 1.9e-26 124.0 322 39.4
SGA_v2.0_scaffold7G03899 Striga asiatica HOM05D007301 ORTHO05D002389 2.5e-26 123.6 223 38.1
Gohir.A06G122000 Gossypium hirsutum HOM05D007301 ORTHO05D002389 4.2e-26 122.9 329 33.1
Oeu050575.1 Olea europaea HOM05D007301 ORTHO05D002389 7.2e-26 122.1 239 36.8
Lj6g0023608 Lotus japonicus HOM05D007301 ORTHO05D002389 1.6e-25 120.9 333 30.0
Peaxi162Scf00931g00032 Petunia axillaris HOM05D007301 ORTHO05D002389 2.1e-25 120.6 306 31.0
THA.LOC104809531 Tarenaya hassleriana HOM05D007301 ORTHO05D002389 6.1e-25 119.0 236 35.2
Duzib235G0854 Durio zibethinus HOM05D007301 ORTHO05D002389 8.0e-25 118.6 196 41.8
Psat1g210680 Pisum sativum HOM05D007301 ORTHO05D002389 6.7e-24 115.5 321 34.0
BcaC07g38666 Brassica carinata HOM05D007301 ORTHO05D002389 1.5e-23 114.4 228 36.8
BolC8t49099H Brassica oleracea HOM05D007301 ORTHO05D002389 1.5e-23 114.4 228 36.8
TPR.G32659 Trifolium pratense HOM05D007301 ORTHO05D002389 2.0e-23 114.0 326 33.1
GSVIVG01006515001 Vitis vinifera HOM05D007301 ORTHO05D002389 2.6e-23 113.6 321 30.2
CAN.G424.85 Capsicum annuum HOM05D007301 ORTHO05D002389 3.3e-23 113.2 349 30.1
Sc05g0008310 Simmondsia chinensis HOM05D007301 ORTHO05D002389 3.3e-23 113.2 300 28.3
AL1G22530 Arabidopsis lyrata HOM05D007301 ORTHO05D002389 5.7e-23 112.5 246 34.1
TAR623G0342 Trochodendron aralioides HOM05D007301 ORTHO05D002389 1.7e-22 110.9 226 40.3
CARHR011720 Cardamine hirsuta HOM05D007301 ORTHO05D002389 2.8e-22 110.2 239 34.3
PGR042G3055 Punica granatum HOM05D007301 ORTHO05D002389 2.8e-22 110.2 230 33.5
BcaB03g13255 Brassica carinata HOM05D007301 ORTHO05D002389 3.7e-22 109.8 234 35.5
AUR62014643 Chenopodium quinoa HOM05D007301 ORTHO05D002389 3.7e-22 109.8 222 35.6
Dinv18959 Davidia involucrata HOM05D000603 ORTHO05D002642 3.7e-22 109.8 185 37.8
SalBow8G1107 Salvia bowleyana HOM05D007301 ORTHO05D002389 6.3e-22 109.0 232 34.1
Sp1g10080 Schrenkiella parvula HOM05D007301 ORTHO05D002389 6.3e-22 109.0 216 37.5
Aqoxy1G00617 Aquilegia oxysepala HOM05D007301 ORTHO05D002389 1.8e-21 107.5 231 33.3
AT1G11440 Arabidopsis thaliana HOM05D007301 ORTHO05D002389 2.4e-21 107.1 263 33.5
Migut.M01248 Erythranthe guttata HOM05D007301 ORTHO05D002389 9.1e-21 105.1 228 33.8
CsaV3_1G011450 Cucumis sativus L. HOM05D007301 ORTHO05D002389 5.9e-20 102.4 230 31.7
unitig_27.g25344 Utricularia gibba HOM05D007301 ORTHO05D002389 5.9e-20 102.4 195 35.9
AUR62012556 Chenopodium quinoa HOM05D007301 ORTHO05D002389 7.7e-20 102.1 254 31.5
BraA06t24007Z Brassica rapa HOM05D007301 ORTHO05D002389 1.0e-19 101.7 282 29.4
C05p09660 Brassica napus HOM05D007301 ORTHO05D002389 3.8e-19 99.8 276 31.2
BolC5t29707H Brassica oleracea HOM05D007301 ORTHO05D002389 3.8e-19 99.8 276 31.2
A06p08080 Brassica napus HOM05D007301 ORTHO05D002389 5.0e-19 99.4 278 29.5
PSO832G1637 Papaver somniferum HOM05D007301 ORTHO05D002389 6.5e-19 99.0 197 37.6
DCAR_004167 Daucus carota HOM05D007301 ORTHO05D002389 1.9e-18 97.4 372 28.8
CSS0002302 Camellia sinensis var. sinensis HOM05D000603 ORTHO05D002642 5.5e-18 95.9 181 39.2
Thhalv10009480m.g Eutrema salsugineum HOM05D007301 ORTHO05D002389 1.2e-17 94.7 249 33.7
A08p33460 Brassica napus HOM05D007301 ORTHO05D002389 1.6e-17 94.4 182 37.4
PSO063G0660 Papaver somniferum HOM05D007301 ORTHO05D002389 1.6e-17 94.4 201 32.8
Carub.0001s1106 Capsella rubella HOM05D007301 ORTHO05D002389 2.7e-17 93.6 266 30.1
C08p14500 Brassica napus HOM05D007301 ORTHO05D002389 3.6e-17 93.2 230 33.5
BcaC05g25022 Brassica carinata HOM05D007301 ORTHO05D002389 4.7e-17 92.8 271 30.3
Hma1.2p1_0809F.1_g221835 Hydrangea macrophylla HOM05D007301 ORTHO05D002389 4.7e-17 92.8 322 29.8
EL10As6g23651 Beta vulgaris HOM05D007301 ORTHO05D002389 5.2e-16 89.4 301 29.2
BraA08t35262Z Brassica rapa HOM05D007301 ORTHO05D002389 8.8e-16 88.6 191 33.0
Aa31LG1G3280 Aethionema arabicum HOM05D007301 ORTHO05D002389 4.4e-15 86.3 277 28.5
Ah.09g236990 Amaranthus hybridus HOM05D007301 ORTHO05D002389 2.2e-14 84.0 252 27.8
FAN25G2682 Fragaria x ananassa HOM05D007301 ORTHO05D002389 3.7e-14 83.2 114 43.0
Dinv17861 Davidia involucrata HOM05D007301 ORTHO05D002389 6.3e-14 82.4 225 30.2
FAN25G1308 Fragaria x ananassa HOM05D007301 ORTHO05D002389 9.1e-13 78.6 111 42.3
Potri.004G029500 Populus trichocarpa HOM05D007301 ORTHO05D002389 1.2e-12 78.2 179 35.2
FAN25G2425 Fragaria x ananassa HOM05D007301 ORTHO05D002389 9.4e-10 68.6 158 36.7
MBI13_g03785_MAGBIO Magnolia biondii HOM05D007301 ORTHO05D002389 3.6e-09 66.6 231 29.0
ECA248G1972 Erigeron canadensis HOM05D007301 ORTHO05D002389 6.1e-09 65.9 73 49.3
Atru.chr10.2092 Acer truncatum HOM05D000580 ORTHO05D001362 1.0e-08 65.1 52 63.5
Nn2g15924 Nelumbo nucifera HOM05D007301 ORTHO05D002389 1.4e-08 64.7 217 28.6
HanXRQChr08g0232051 Helianthus annuus HOM05D007301 ORTHO05D002389 1.8e-08 64.3 50 58.0
Lsat_1_v5_gn_1_123940 Lactuca sativa HOM05D007301 ORTHO05D002389 1.8e-08 64.3 211 26.5
Ah.14g088560 Amaranthus hybridus HOM05D007301 ORTHO05D002389 5.2e-08 62.8 79 43.0
Lju41A9G72 Lonicera japonica HOM05D004339 ORTHO05D002389 5.2e-08 62.8 113 35.4
HPP92_017447 Vanilla planifolia HOM05D004339 ORTHO05D002389 2.0e-07 60.8 136 36.8
HPP92_021211 Vanilla planifolia HOM05D007301 ORTHO05D037236 2.0e-07 60.8 193 30.6
ECA238G2462 Erigeron canadensis HOM05D004339 ORTHO05D002389 2.6e-07 60.5 95 40.0
unitig_21.g20933 Utricularia gibba HOM05D004339 ORTHO05D002389 4.4e-07 59.7 83 42.2
Lju41A9T72 Lonicera japonica HOM05D004339 ORTHO05D002389 7.5e-07 58.9 130 33.8
Peaxi162Scf00166g01032 Petunia axillaris HOM05D004339 ORTHO05D002389 7.5e-07 58.9 50 48.0
MSTRG.3030 Avicennia marina HOM05D004339 ORTHO05D002389 9.8e-07 58.5 92 39.1
Ciclev10011817m.g Citrus clementina HOM05D004339 ORTHO05D002389 1.3e-06 58.2 36 61.1
Hma1.2p1_1191F.1_g265440 Hydrangea macrophylla HOM05D004339 ORTHO05D002389 1.3e-06 58.2 112 33.9
Lsat_1_v5_gn_4_170381 Lactuca sativa HOM05D004339 ORTHO05D002389 1.3e-06 58.2 49 49.0
MD09G1054800 Malus domestica HOM05D004339 ORTHO05D002389 1.3e-06 58.2 160 29.4
PGR004G0671 Punica granatum HOM05D004339 ORTHO05D002389 1.3e-06 58.2 92 34.8
vmacro18177 Vaccinium macrocarpon HOM05D004339 ORTHO05D002389 1.3e-06 58.2 39 59.0
AUR62024487 Chenopodium quinoa HOM05D004339 ORTHO05D002389 1.7e-06 57.8 39 64.1
FAN05G4997 Fragaria x ananassa HOM05D004339 ORTHO05D002389 1.7e-06 57.8 93 38.7
Manes.01G101300 Manihot esculenta HOM05D004339 ORTHO05D002389 1.7e-06 57.8 36 63.9
HPP92_017452 Vanilla planifolia HOM05D004339 ORTHO05D002389 1.7e-06 57.8 116 36.2
Aa31LG2G4120 Aethionema arabicum HOM05D004339 ORTHO05D002389 2.2e-06 57.4 128 30.5
COL.COLO4_10350 Corchorus olitorius HOM05D004339 ORTHO05D002389 2.2e-06 57.4 110 37.3
Rhsim13G0163500 Rhododendron simsii HOM05D007301 ORTHO05D002389 2.2e-06 57.4 56 48.2
SGA_v2.0_scaffold413G51176 Striga asiatica HOM05D004339 ORTHO05D002389 2.2e-06 57.4 39 56.4
VMungo0464G1715 Vigna mungo HOM05D004339 ORTHO05D002389 2.2e-06 57.4 119 31.9
Dinv11507 Davidia involucrata HOM05D004339 ORTHO05D002389 2.8e-06 57.0 92 37.0
ECA232G3508 Erigeron canadensis HOM05D004339 ORTHO05D002389 2.8e-06 57.0 39 61.5
HanXRQChr14g0448551 Helianthus annuus HOM05D004339 ORTHO05D002389 2.8e-06 57.0 115 37.4
Solyc02g088260.3 Solanum lycopersicum HOM05D004339 ORTHO05D002389 2.8e-06 57.0 133 33.8
Sopen02g032940 Solanum pennellii HOM05D004339 ORTHO05D002389 2.8e-06 57.0 133 33.8
Carub.0005s0780 Capsella rubella HOM05D004339 ORTHO05D002389 3.7e-06 56.6 44 52.3
Cc07_g03620 Coffea canephora HOM05D004339 ORTHO05D002389 3.7e-06 56.6 41 58.5
Psat1g070960 Pisum sativum HOM05D004339 ORTHO05D002389 3.7e-06 56.6 38 57.9
DCAR_011081 Daucus carota HOM05D004339 ORTHO05D002389 4.8e-06 56.2 69 43.5
Eucgr.I02023 Eucalyptus grandis HOM05D004339 ORTHO05D002389 4.8e-06 56.2 88 38.6
RcHm_v2.0_Chr2g0167311 Rosa chinensis HOM05D004339 ORTHO05D002389 4.8e-06 56.2 83 37.3
Manes.02G048440 Manihot esculenta HOM05D004339 ORTHO05D002389 8.3e-06 55.5 113 35.4
Os02g0743600 Oryza sativa ssp. japonica HOM05D004339 ORTHO05D002389 8.3e-06 55.5 39 59.0
Potri.004G127400 Populus trichocarpa HOM05D004339 ORTHO05D002389 8.3e-06 55.5 36 58.3
Rhsim08G0071400 Rhododendron simsii HOM05D004339 ORTHO05D002389 8.3e-06 55.5 41 53.7
Sc10g0003440 Simmondsia chinensis HOM05D004339 ORTHO05D002389 8.3e-06 55.5 83 43.4


User provided reference genes

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