Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3680 Acer truncatum HOM05D003196 ORTHO05D003543 2.2e-49 199.1 137 100.0
Thecc.06G109100 Theobroma cacao HOM05D003196 ORTHO05D003543 2.2e-25 119.4 139 58.3
Duzib235G0666 Durio zibethinus HOM05D003196 ORTHO05D003543 3.7e-25 118.6 139 62.6
MD09G1194300 Malus domestica HOM05D003196 ORTHO05D003543 8.5e-22 107.5 138 58.0
Duzib192G0676 Durio zibethinus HOM05D003196 ORTHO05D003543 2.7e-20 102.4 137 55.5
Gohir.D10G061900 Gossypium hirsutum HOM05D003196 ORTHO05D003543 4.7e-20 101.7 137 50.4
ClCG09G000640 Citrullus lanatus HOM05D003196 ORTHO05D003543 8.0e-20 100.9 136 46.3
FAN05G4539 Fragaria x ananassa HOM05D003196 ORTHO05D003543 8.0e-20 100.9 136 57.4
Ciclev10026551m.g Citrus clementina HOM05D003196 ORTHO05D003543 2.3e-19 99.4 130 66.9
FvH4_6g33180 Fragaria vesca HOM05D003196 ORTHO05D003543 2.3e-19 99.4 136 57.4
RcHm_v2.0_Chr2g0142911 Rosa chinensis HOM05D003196 ORTHO05D003543 2.3e-19 99.4 136 55.9
TAR636G1648 Trochodendron aralioides HOM05D003196 ORTHO05D003543 6.8e-19 97.8 138 45.7
TWI79G1769 Tripterygium wilfordii HOM05D003196 ORTHO05D003543 8.8e-19 97.4 137 61.3
CSS0003677 Camellia sinensis var. sinensis HOM05D003196 ORTHO05D003543 2.6e-18 95.9 139 60.4
CSS0004116 Camellia sinensis var. sinensis HOM05D003196 ORTHO05D003543 2.6e-18 95.9 139 63.3
FAN14G0807 Fragaria x ananassa HOM05D003196 ORTHO05D003543 3.4e-18 95.5 135 56.3
Gohir.A10G060800 Gossypium hirsutum HOM05D003196 ORTHO05D003543 3.4e-18 95.5 137 49.6
CANSAT56G4409 Cannabis sativa HOM05D003196 ORTHO05D003543 5.7e-18 94.7 128 62.5
MELO3C024395.2 Cucumis melo HOM05D003196 ORTHO05D003543 9.7e-18 94.0 134 60.4
Manes.11G027100 Manihot esculenta HOM05D003196 ORTHO05D003543 9.7e-18 94.0 144 50.7
CsaV3_7G034840 Cucumis sativus L. HOM05D003196 ORTHO05D003543 2.8e-17 92.4 134 58.2
PGR102G0498 Punica granatum HOM05D003196 ORTHO05D003543 3.7e-17 92.0 133 54.9
CiPaw.02G140800 Carya illinoinensis HOM05D003196 ORTHO05D003543 4.8e-17 91.7 139 59.7
QL04p071305 Quercus lobata HOM05D003196 ORTHO05D003543 1.4e-16 90.1 139 51.8
Sed0023272 Sechium edule HOM05D003196 ORTHO05D003543 2.4e-16 89.4 138 44.2
MBI01_g09953_MAGBIO Magnolia biondii HOM05D003196 ORTHO05D003543 5.3e-16 88.2 138 41.3
Eucgr.F03128 Eucalyptus grandis HOM05D003196 ORTHO05D003543 7.0e-16 87.8 137 62.0
Lalb_Chr25g0280681 Lupinus albus HOM05D003196 ORTHO05D003543 1.2e-15 87.0 136 55.9
Solyc03g121520.3 Solanum lycopersicum HOM05D003196 ORTHO05D003543 1.2e-15 87.0 138 58.0
PGSC0003DMG400002500 Solanum tuberosum HOM05D003196 ORTHO05D003543 1.2e-15 87.0 139 38.8
Sopen03g040330 Solanum pennellii HOM05D003196 ORTHO05D003543 1.6e-15 86.7 133 54.1
Aqoxy7G01222 Aquilegia oxysepala HOM05D003196 ORTHO05D003543 2.7e-15 85.9 138 52.9
THA.LOC104822633 Tarenaya hassleriana HOM05D003196 ORTHO05D003543 3.5e-15 85.5 137 62.0
GSVIVG01016846001 Vitis vinifera HOM05D003196 ORTHO05D003543 4.5e-15 85.1 114 52.6
COL.COLO4_30652 Corchorus olitorius HOM05D000032 ORTHO05D002561 5.9e-15 84.7 129 59.7
TAR624G0259 Trochodendron aralioides HOM05D003196 ORTHO05D003543 1.7e-14 83.2 140 51.4
Nn6g35461 Nelumbo nucifera HOM05D003196 ORTHO05D003543 2.2e-14 82.8 114 43.9
Dinv37919 Davidia involucrata HOM05D003196 ORTHO05D003543 5.0e-14 81.6 149 54.4
Prupe.3G050800 Prunus persica HOM05D003196 ORTHO05D003543 5.0e-14 81.6 85 58.8
Hund18725 Selenicereus undatus HOM05D003196 ORTHO05D003543 5.0e-14 81.6 134 49.3
Glyma.08G193800 Glycine max HOM05D003196 ORTHO05D003543 6.5e-14 81.3 132 44.7
Cpa.g.sc25.60 Carica papaya HOM05D003196 ORTHO05D003543 8.5e-14 80.9 91 83.5
Gorai.011G066100 Gossypium raimondii HOM05D003196 ORTHO05D003543 1.1e-13 80.5 123 48.0
Sc15g0000110 Simmondsia chinensis HOM05D003196 ORTHO05D003543 1.5e-13 80.1 133 51.9
Hma1.2p1_0388F.1_g142290 Hydrangea macrophylla HOM05D003196 ORTHO05D003543 5.5e-13 78.2 77 54.5
Nitab4.5_0007429g0040 Nicotiana tabacum HOM05D003196 ORTHO05D003543 5.5e-13 78.2 142 56.3
TWI75G0934 Tripterygium wilfordii HOM05D003196 ORTHO05D003543 7.2e-13 77.8 138 51.4
Lj3g0010265 Lotus japonicus HOM05D003196 ORTHO05D003543 9.4e-13 77.4 133 46.6
CAN.G1389.12 Capsicum annuum HOM05D003196 ORTHO05D003543 1.6e-12 76.6 139 56.8
VMungo0331G0087 Vigna mungo HOM05D003196 ORTHO05D003543 1.6e-12 76.6 132 42.4
Aa31LG10G950 Aethionema arabicum HOM05D003196 ORTHO05D003543 2.7e-12 75.9 130 58.5
Peaxi162Scf00038g01523 Petunia axillaris HOM05D003196 ORTHO05D003543 2.7e-12 75.9 139 56.1
Potri.001G200200 Populus trichocarpa HOM05D003196 ORTHO05D003543 2.7e-12 75.9 132 60.6
vmacro18791 Vaccinium macrocarpon HOM05D003196 ORTHO05D003543 3.6e-12 75.5 138 49.3
Ah.15g094190 Amaranthus hybridus HOM05D003196 ORTHO05D003543 6.1e-12 74.7 139 35.3
Ca_23312_v3 Cicer arietinum L. HOM05D003196 ORTHO05D003543 6.1e-12 74.7 137 45.3
Phvul.010G139500 Phaseolus vulgaris HOM05D003196 ORTHO05D003543 6.1e-12 74.7 134 43.3
CiPaw.01G225600 Carya illinoinensis HOM05D003196 ORTHO05D003543 8.0e-12 74.3 136 60.3
Thhalv10011806m.g Eutrema salsugineum HOM05D003196 ORTHO05D003543 8.0e-12 74.3 138 52.2
HanXRQChr10g0313061 Helianthus annuus HOM05D003196 ORTHO05D003543 8.0e-12 74.3 137 51.8
Medtr8g016210 Medicago truncatula HOM05D003196 ORTHO05D003543 1.4e-11 73.6 135 37.8
Nitab4.5_0021273g0010 Nicotiana tabacum HOM05D003196 ORTHO05D003543 1.8e-11 73.2 142 54.2
AUR62038126 Chenopodium quinoa HOM05D003196 ORTHO05D003543 3.0e-11 72.4 113 45.1
CARHR044760 Cardamine hirsuta HOM05D003196 ORTHO05D003543 5.2e-11 71.6 134 56.0
Glyma.07G010600 Glycine max HOM05D003196 ORTHO05D003543 5.2e-11 71.6 132 41.7
Nn8g38879 Nelumbo nucifera HOM05D003196 ORTHO05D003543 6.8e-11 71.2 71 47.9
Cc04_g02010 Coffea canephora HOM05D003196 ORTHO05D003543 8.8e-11 70.9 134 37.3
EL10Ac7g15773 Beta vulgaris HOM05D003196 ORTHO05D003543 1.2e-10 70.5 127 50.4
Carub.0001s4366 Capsella rubella HOM05D003196 ORTHO05D003543 1.2e-10 70.5 136 55.1
THA.LOC104810345 Tarenaya hassleriana HOM05D003196 ORTHO05D003543 2.0e-10 69.7 137 52.6
AT1G55160 Arabidopsis thaliana HOM05D003196 ORTHO05D003543 2.6e-10 69.3 135 52.6
BraA05t20658Z Brassica rapa HOM05D003196 ORTHO05D003543 2.6e-10 69.3 136 33.8
AL1G63160 Arabidopsis lyrata HOM05D003196 ORTHO05D003543 3.4e-10 68.9 135 51.1
MSTRG.10988 Avicennia marina HOM05D003196 ORTHO05D003543 5.7e-10 68.2 132 51.5
Nitab4.5_0007137g0040 Nicotiana tabacum HOM05D003196 ORTHO05D003543 5.7e-10 68.2 73 52.1
Haze_15943 Corylus avellana HOM05D003196 ORTHO05D003543 7.5e-10 67.8 86 77.9
Sp1g40820 Schrenkiella parvula HOM05D003196 ORTHO05D003543 9.8e-10 67.4 135 54.8
BcaB04g16988 Brassica carinata HOM05D003196 ORTHO05D003543 1.3e-09 67.0 135 55.6
BcaC01g01468 Brassica carinata HOM05D003196 ORTHO05D003543 1.3e-09 67.0 134 53.7
C03p92290 Brassica napus HOM05D003196 ORTHO05D003543 1.3e-09 67.0 134 53.7
PSO063G3162 Papaver somniferum HOM05D003196 ORTHO05D003543 1.3e-09 67.0 136 44.9
A08p00920 Brassica napus HOM05D003196 ORTHO05D003543 1.7e-09 66.6 134 52.2
BolC3t21543H Brassica oleracea HOM05D003196 ORTHO05D003543 1.7e-09 66.6 134 56.7
Nitab4.5_0003218g0010 Nicotiana tabacum HOM05D003196 ORTHO05D003543 1.7e-09 66.6 73 52.1
Lsat_1_v5_gn_5_134840 Lactuca sativa HOM05D003196 ORTHO05D003543 2.2e-09 66.2 131 55.7
MD17G1174800 Malus domestica HOM05D003196 ORTHO05D003543 3.7e-09 65.5 73 53.4
BolC6t36771H Brassica oleracea HOM05D003196 ORTHO05D003543 1.4e-08 63.5 69 47.8
PSO832G1719 Papaver somniferum HOM05D003196 ORTHO05D003543 1.4e-08 63.5 130 44.6
Sed0009658 Sechium edule HOM05D003196 ORTHO05D003543 1.4e-08 63.5 76 48.7
A05p17660 Brassica napus HOM05D003196 ORTHO05D003543 3.1e-08 62.4 138 34.1
Lj5A46T61 Lonicera japonica HOM05D003196 ORTHO05D003543 3.1e-08 62.4 86 73.3
SGA_v2.0_scaffold71G23777 Striga asiatica HOM05D000032 ORTHO05D002561 3.1e-08 62.4 64 53.1
PGSC0003DMG400033640 Solanum tuberosum HOM05D003196 ORTHO05D003543 7.0e-08 61.2 76 47.4
unitig_748.g8085 Utricularia gibba HOM05D003196 ORTHO05D003543 1.2e-07 60.5 132 43.9
Dinv36763 Davidia involucrata HOM05D003196 ORTHO05D003543 2.0e-07 59.7 76 42.1
Solyc12g044850.2 Solanum lycopersicum HOM05D003196 ORTHO05D003543 2.0e-07 59.7 75 46.7
Sopen12g023210 Solanum pennellii HOM05D003196 ORTHO05D003543 2.0e-07 59.7 75 46.7
CDE06G1058 Ceratophyllum demersum HOM05D003196 ORTHO05D003543 3.5e-07 58.9 80 43.8
Actinidia29882 Actinidia chinensis HOM05D003196 ORTHO05D003543 4.5e-07 58.5 76 48.7
DCAR_016165 Daucus carota HOM05D003196 ORTHO05D003543 4.5e-07 58.5 172 37.8
AUR62009814 Chenopodium quinoa HOM05D003196 ORTHO05D003543 7.7e-07 57.8 43 58.1
Ciclev10009803m.g Citrus clementina HOM05D003196 ORTHO05D003543 7.7e-07 57.8 83 37.3
Hund20859 Selenicereus undatus HOM05D003196 ORTHO05D003543 1.0e-06 57.4 37 64.9
ATR0749G003 Amborella trichopoda HOM05D003196 ORTHO05D003543 1.3e-06 57.0 137 38.7
BcaC08g44178 Brassica carinata HOM05D003196 ORTHO05D003543 1.7e-06 56.6 69 44.9
C06p15800 Brassica napus HOM05D003196 ORTHO05D003543 1.7e-06 56.6 69 44.9
BcaB02g10842 Brassica carinata HOM05D003196 ORTHO05D003543 5.0e-06 55.1 70 44.3
QL01p028322 Quercus lobata HOM05D003196 ORTHO05D003543 6.6e-06 54.7 93 43.0


User provided reference genes

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