Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 8.8e-272 939.9 539 100.0
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.7e-145 520.4 497 60.6
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 1.6e-140 503.8 503 58.1
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 5.9e-135 485.3 565 52.7
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 4.2e-133 479.2 487 57.7
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 3.0e-131 473.0 487 56.9
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 8.8e-131 471.5 499 56.9
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 4.8e-129 465.7 495 56.8
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.3e-126 457.6 497 55.5
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 2.8e-124 449.9 579 52.0
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 4.7e-124 449.1 488 55.5
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 3.7e-121 439.5 574 49.8
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.3e-118 431.0 498 52.2
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 2.9e-118 429.9 494 54.0
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 5.0e-118 429.1 501 51.5
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 5.0e-118 429.1 510 53.9
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.1e-117 427.9 508 52.0
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.5e-117 426.8 499 52.5
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 5.6e-117 425.6 492 54.5
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.3e-117 425.2 497 54.1
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 9.5e-117 424.9 503 53.7
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 3.6e-116 422.9 500 53.2
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 6.1e-116 422.2 476 53.4
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 1.0e-115 421.4 499 50.5
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 2.3e-115 420.2 503 49.9
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 3.1e-115 419.9 496 51.4
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.0e-115 419.5 494 50.4
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 5.2e-115 419.1 488 53.3
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 6.8e-115 418.7 551 50.8
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 6.8e-115 418.7 496 52.4
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.5e-114 417.5 485 52.0
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 4.4e-114 416.0 501 51.7
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 9.8e-114 414.8 498 51.4
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.9e-112 410.6 491 49.7
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 5.4e-112 409.1 513 51.7
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 7.0e-112 408.7 498 50.2
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 7.0e-112 408.7 506 51.0
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 3.5e-111 406.4 502 51.2
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.9e-110 402.9 487 51.3
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 6.6e-110 402.1 559 57.1
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.1e-109 401.4 487 52.2
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.5e-109 400.2 505 50.7
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.2e-108 397.9 502 51.2
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.6e-108 397.5 463 52.1
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 3.6e-108 396.4 559 56.7
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 4.7e-108 396.0 521 50.1
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 8.0e-108 395.2 586 47.1
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.4e-107 394.4 494 51.0
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 3.1e-107 393.3 500 50.8
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 5.2e-107 392.5 496 52.0
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 2.0e-106 390.6 567 47.1
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.4e-106 389.8 501 48.5
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 3.4e-106 389.8 501 48.5
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 4.4e-106 389.4 507 50.1
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.7e-105 387.5 495 50.5
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 8.3e-105 385.2 501 48.5
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 3.2e-104 383.3 481 50.1
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 5.4e-104 382.5 680 39.9
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.6e-103 380.9 491 50.1
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 2.1e-103 380.6 483 51.1
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 2.7e-103 380.2 509 49.3
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.6e-103 379.4 491 49.9
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 6.0e-103 379.0 508 49.0
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 6.0e-103 379.0 607 52.4
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 1.0e-102 378.3 507 49.7
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.0e-102 376.7 481 50.5
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.9e-102 376.3 470 50.4
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 3.9e-102 376.3 501 50.3
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 1.9e-101 374.0 434 52.8
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 3.3e-101 373.2 488 48.8
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 5.6e-101 372.5 583 45.1
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 5.6e-101 372.5 582 45.4
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.6e-100 370.9 503 47.7
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.1e-100 370.5 502 49.4
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.1e-99 368.2 608 42.8
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.6e-98 363.6 512 50.2
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.3e-97 361.3 503 49.1
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.2e-97 360.5 506 50.6
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 4.1e-96 356.3 506 47.4
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 9.2e-96 355.1 510 48.2
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 1.2e-95 354.8 463 47.1
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 6.0e-95 352.4 494 46.0
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 7.8e-95 352.1 567 44.3
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.3e-94 351.3 514 46.1
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 1.3e-94 351.3 479 47.6
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 1.6e-92 344.4 502 47.4
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 8.1e-92 342.0 494 47.6
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 8.1e-92 342.0 494 45.5
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 2.4e-91 340.5 508 48.0
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.5e-90 337.8 489 45.6
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 2.2e-89 334.0 506 44.7
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 7.1e-88 328.9 495 43.6
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 2.7e-87 327.0 493 45.6
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 2.7e-87 327.0 472 45.8
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 3.9e-86 323.2 496 45.2
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 5.1e-86 322.8 494 45.1
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 5.1e-86 322.8 492 44.7
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 6.6e-86 322.4 501 44.9
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 2.5e-85 320.5 498 44.6
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.3e-85 318.9 510 42.5
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 9.6e-85 318.5 502 46.2
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 3.6e-84 316.6 503 43.9
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 3.6e-84 316.6 503 43.9
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 3.6e-84 316.6 506 42.5
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.6e-84 316.6 510 42.2
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.6e-84 316.6 510 42.4
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 8.1e-84 315.5 517 43.5
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 4.0e-83 313.2 490 43.7
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 1.5e-82 311.2 494 43.5
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.9e-77 294.3 494 40.9
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 4.5e-74 283.1 349 51.6
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 9.9e-74 282.0 305 53.4
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.3e-73 281.6 302 56.3
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.0e-70 271.9 523 40.5
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.1e-69 268.5 479 40.9
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.3e-68 265.0 326 52.5
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 6.9e-67 259.2 479 41.5
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 1.3e-65 255.0 478 39.5
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 1.3e-65 255.0 478 39.5
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 7.9e-47 192.6 535 32.0
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.9e-46 190.3 189 57.1
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.8e-43 181.4 454 35.5
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.4e-42 177.2 159 62.3
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 2.2e-41 174.5 566 31.8
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.8e-41 173.7 298 42.3
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 5.5e-40 169.9 357 37.8
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 3.0e-38 164.1 300 40.7
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.7e-36 157.1 356 38.2
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.7e-36 157.1 355 37.2
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 7.2e-32 142.9 201 45.8
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.6e-29 134.4 475 29.9
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 6.3e-28 129.8 648 27.3
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.2e-28 129.4 122 59.0
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 5.5e-24 116.7 238 39.1
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.2e-21 109.0 469 26.7
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.8e-20 104.4 88 60.2
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 3.1e-19 100.9 134 50.7
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 9.1e-19 99.4 136 47.8
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.9e-17 94.4 159 42.1
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.8e-17 94.0 99 52.5
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 8.5e-17 92.8 428 30.4
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.2e-16 89.7 181 42.0
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 9.4e-16 89.4 119 47.1
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.2e-13 82.4 179 35.8
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 4.5e-10 70.5 351 27.6
Actinidia15387 Actinidia chinensis HOM05D004539 ORTHO05D005482 6.6e-09 66.6 98 46.9
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.1e-08 65.9 261 33.3
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.6e-07 62.0 251 30.3


User provided reference genes

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