Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.7e-132 476.1 249 100.0
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 9.8e-93 344.0 228 77.6
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 3.0e-89 332.4 241 70.5
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 4.7e-87 325.1 223 73.5
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.6e-85 319.3 223 72.2
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 2.6e-85 319.3 223 72.6
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 2.6e-85 319.3 226 73.0
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 3.4e-85 318.9 224 71.4
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 3.7e-84 315.5 245 68.6
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 4.9e-84 315.1 224 70.5
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 2.4e-83 312.8 227 71.8
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 3.9e-81 305.4 237 67.1
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 8.6e-81 304.3 226 70.4
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 1.9e-80 303.1 249 63.9
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 7.3e-80 301.2 223 70.9
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 1.2e-79 300.4 240 67.5
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 1.1e-78 297.4 231 67.5
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.8e-78 296.6 218 70.2
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 5.2e-78 295.0 224 69.2
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 2.0e-77 293.1 222 70.3
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 4.4e-77 292.0 216 69.0
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 4.4e-77 292.0 229 65.1
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 8.4e-76 287.7 232 65.5
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 1.9e-75 286.6 217 65.0
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 2.4e-75 286.2 234 64.1
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 3.2e-75 285.8 241 64.3
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 5.4e-75 285.0 239 63.6
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 7.1e-75 284.6 235 63.0
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 3.5e-74 282.3 230 63.0
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 4.6e-74 282.0 240 62.9
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 4.6e-74 282.0 218 63.8
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 6.0e-74 281.6 209 67.9
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.0e-73 280.8 234 63.2
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 1.7e-73 280.0 217 65.9
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 2.3e-73 279.6 234 62.8
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 3.0e-73 279.3 228 64.0
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 5.1e-73 278.5 228 62.7
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 5.1e-73 278.5 240 61.7
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 5.1e-73 278.5 223 66.8
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 8.7e-73 277.7 222 64.4
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 1.1e-72 277.3 221 64.3
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.5e-72 276.9 234 61.5
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.9e-72 276.6 224 64.7
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 4.3e-72 275.4 265 59.2
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 5.6e-72 275.0 228 64.0
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 7.3e-72 274.6 234 64.1
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 9.6e-72 274.2 226 63.3
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 2.1e-71 273.1 228 64.9
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 2.8e-71 272.7 235 60.9
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 4.7e-71 271.9 218 63.3
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.7e-71 271.9 224 63.8
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 4.7e-71 271.9 224 63.8
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 6.2e-71 271.6 221 63.3
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.4e-70 270.4 209 64.1
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 3.1e-70 269.2 241 63.1
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 4.0e-70 268.9 220 65.5
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 6.9e-70 268.1 337 47.8
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 6.9e-70 268.1 240 60.4
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 9.0e-70 267.7 228 60.1
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 9.9e-69 264.2 223 61.0
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.7e-68 263.5 212 62.3
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 2.2e-68 263.1 235 60.9
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 2.2e-68 263.1 230 62.6
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 3.8e-68 262.3 225 62.7
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 6.4e-68 261.5 220 61.8
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 8.4e-68 261.2 218 64.7
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 1.1e-67 260.8 214 63.1
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 1.1e-67 260.8 225 62.2
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 1.4e-67 260.4 182 71.4
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.4e-67 260.4 227 62.6
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 1.4e-67 260.4 218 61.0
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 2.4e-67 259.6 222 63.5
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 3.2e-67 259.2 207 62.3
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 9.3e-67 257.7 211 62.1
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 9.3e-67 257.7 236 59.3
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 1.2e-66 257.3 215 60.5
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 1.6e-66 256.9 247 59.5
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 7.8e-66 254.6 220 63.2
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 1.0e-65 254.2 211 61.6
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 1.7e-65 253.4 216 59.3
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.3e-65 253.1 229 60.3
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 3.0e-65 252.7 222 59.0
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 3.0e-65 252.7 225 59.1
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 9.6e-64 247.7 227 60.8
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.6e-63 246.9 207 61.4
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 2.1e-63 246.5 214 59.8
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 2.8e-63 246.1 231 58.9
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 1.4e-62 243.8 214 59.8
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 1.8e-62 243.4 237 57.8
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.1e-62 242.7 212 61.8
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 5.3e-62 241.9 302 48.7
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 6.9e-62 241.5 236 55.1
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.9e-62 241.5 211 58.8
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.9e-62 241.5 211 58.8
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.2e-61 240.7 221 56.1
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 2.0e-61 240.0 216 58.3
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 2.0e-61 240.0 246 53.3
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.6e-61 239.6 211 58.3
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 9.9e-61 237.7 238 53.8
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 4.9e-60 235.3 212 59.4
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 4.2e-59 232.3 202 62.4
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 5.4e-59 231.9 221 55.2
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.6e-58 230.3 254 53.1
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 2.1e-58 229.9 223 55.6
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 7.9e-58 228.0 227 55.9
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 6.7e-57 224.9 217 55.3
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.5e-56 223.8 168 69.0
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 3.3e-56 222.6 216 55.1
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 1.3e-55 220.7 220 57.7
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 1.6e-55 220.3 208 58.7
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 2.8e-55 219.5 188 61.2
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 6.2e-55 218.4 175 66.3
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 1.8e-54 216.9 203 59.6
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 9.0e-54 214.5 219 52.5
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 2.0e-53 213.4 216 54.6
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 2.6e-53 213.0 179 64.2
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 1.3e-52 210.7 143 72.7
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 6.4e-52 208.4 215 53.0
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 1.9e-51 206.8 182 60.4
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 1.2e-50 204.1 161 67.1
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 1.0e-49 201.1 217 53.0
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 6.7e-49 198.4 199 51.3
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.5e-48 196.4 193 59.1
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 4.8e-47 192.2 128 73.4
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 4.8e-47 192.2 194 57.2
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 3.1e-46 189.5 208 52.4
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 1.3e-44 184.1 136 69.9
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 2.7e-42 176.4 174 55.7
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 3.9e-41 172.6 160 55.6
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 1.5e-40 170.6 160 55.0
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 1.5e-40 170.6 160 55.0
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 1.6e-39 167.2 175 51.4
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 2.6e-37 159.8 204 45.6
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 3.8e-36 156.0 365 32.9
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.9e-32 143.7 195 49.2
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 7.4e-32 141.7 184 47.3
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 8.5e-20 101.7 236 34.7
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 6.1e-18 95.5 232 33.6
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 5.2e-17 92.4 118 44.1
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 8.8e-17 91.7 105 47.6
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 7.4e-16 88.6 154 42.9
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 2.2e-15 87.0 81 54.3
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 5.3e-14 82.4 185 31.9
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 9.1e-14 81.6 241 32.0
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 9.1e-14 81.6 142 38.7
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 1.3e-12 77.8 55 70.9
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 2.5e-11 73.6 86 51.2
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 4.2e-11 72.8 44 75.0
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.2e-11 72.8 76 55.3
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 1.6e-10 70.9 48 72.9
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 3.6e-10 69.7 57 57.9
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 6.1e-10 68.9 112 41.1
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.0e-09 68.2 100 45.0
AagrBONN_evm.TU.Sc2ySwM_117.2582 Anthoceros agrestis HOM05D004812 ORTHO05D005721 4.8e-07 59.3 169 33.7
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 1.4e-06 57.8 91 47.3
Nitab4.5_0005191g0060 Nicotiana tabacum HOM05D000175 ORTHO05D000481 7.0e-06 55.5 62 43.5


User provided reference genes

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