Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01093 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 7.1e-48 193.7 107 100.0
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 9.9e-18 93.6 107 55.1
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 1.7e-17 92.8 107 53.3
Lalb_Chr09g0322471 Lupinus albus HOM05D003234 ORTHO05D003635 2.9e-17 92.0 107 57.0
Nn1g05018 Nelumbo nucifera HOM05D003234 ORTHO05D003635 3.8e-17 91.7 108 56.5
Actinidia12120 Actinidia chinensis HOM05D003234 ORTHO05D003635 4.9e-17 91.3 107 53.3
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 4.9e-17 91.3 106 53.8
Psat4g092120 Pisum sativum HOM05D003234 ORTHO05D003635 6.4e-17 90.9 107 56.1
Zm00001eb009770 Zea mays HOM05D003234 ORTHO05D003635 6.4e-17 90.9 107 51.4
Actinidia36555 Actinidia chinensis HOM05D003234 ORTHO05D003635 8.4e-17 90.5 107 55.1
HanXRQChr15g0482261 Helianthus annuus HOM05D003234 ORTHO05D003635 8.4e-17 90.5 107 55.1
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 8.4e-17 90.5 108 46.3
ECA246G3301 Erigeron canadensis HOM05D003234 ORTHO05D003635 1.1e-16 90.1 107 53.3
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.9e-16 89.4 107 46.7
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 2.4e-16 89.0 107 45.8
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.4e-16 89.0 107 45.8
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 3.2e-16 88.6 107 50.5
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 3.2e-16 88.6 107 44.9
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 3.2e-16 88.6 107 44.9
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 3.2e-16 88.6 108 48.1
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 3.2e-16 88.6 107 44.9
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 4.2e-16 88.2 107 55.1
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 4.2e-16 88.2 108 46.3
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 4.2e-16 88.2 107 44.9
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 7.1e-16 87.4 107 43.9
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 7.1e-16 87.4 107 50.5
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 7.1e-16 87.4 107 45.8
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 7.1e-16 87.4 107 45.8
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 7.1e-16 87.4 107 43.9
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 7.1e-16 87.4 108 46.3
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 9.3e-16 87.0 107 48.6
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 9.3e-16 87.0 107 44.9
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 9.3e-16 87.0 107 44.9
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 9.3e-16 87.0 107 45.8
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 9.3e-16 87.0 106 50.9
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 1.2e-15 86.7 107 43.9
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 1.2e-15 86.7 107 45.8
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 1.2e-15 86.7 107 44.9
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 1.2e-15 86.7 107 45.8
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.6e-15 86.3 108 45.4
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 1.6e-15 86.3 107 43.9
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 1.6e-15 86.3 107 44.9
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 1.6e-15 86.3 107 46.7
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.6e-15 86.3 107 44.9
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.6e-15 86.3 107 44.9
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.6e-15 86.3 107 44.9
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 1.6e-15 86.3 107 43.9
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 2.1e-15 85.9 109 45.9
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 2.1e-15 85.9 110 45.5
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 2.1e-15 85.9 107 43.9
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 2.1e-15 85.9 107 43.9
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 2.7e-15 85.5 107 44.9
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 2.7e-15 85.5 108 45.4
Cc07_g09430 Coffea canephora HOM05D003234 ORTHO05D003635 2.7e-15 85.5 107 57.0
Migut.H00998 Erythranthe guttata HOM05D003234 ORTHO05D003635 2.7e-15 85.5 107 51.4
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 2.7e-15 85.5 108 45.4
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 2.7e-15 85.5 107 44.9
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 3.5e-15 85.1 107 43.0
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 3.5e-15 85.1 107 43.9
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 3.5e-15 85.1 107 45.8
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 3.5e-15 85.1 107 43.9
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 3.5e-15 85.1 107 43.9
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 3.5e-15 85.1 107 43.9
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 3.5e-15 85.1 107 44.9
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 4.6e-15 84.7 107 43.9
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 4.6e-15 84.7 107 43.0
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 4.6e-15 84.7 107 43.9
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 4.6e-15 84.7 109 45.9
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 6.0e-15 84.3 109 45.0
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 6.0e-15 84.3 108 44.4
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 7.9e-15 84.0 107 50.5
Ciclev10026821m.g Citrus clementina HOM05D003234 ORTHO05D003635 7.9e-15 84.0 107 54.2
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 7.9e-15 84.0 107 44.9
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 7.9e-15 84.0 107 43.9
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 7.9e-15 84.0 106 50.9
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 7.9e-15 84.0 107 46.7
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 7.9e-15 84.0 109 46.8
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.0e-14 83.6 107 43.0
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 1.0e-14 83.6 107 41.1
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 1.0e-14 83.6 107 41.1
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 1.0e-14 83.6 107 41.1
Lj4g0023984 Lotus japonicus HOM05D003234 ORTHO05D003635 1.0e-14 83.6 107 53.3
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 1.0e-14 83.6 107 45.8
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.3e-14 83.2 107 43.0
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.3e-14 83.2 107 44.9
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 1.3e-14 83.2 108 44.4
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 1.3e-14 83.2 109 44.0
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 1.3e-14 83.2 107 43.9
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 1.3e-14 83.2 107 43.9
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 1.8e-14 82.8 107 43.0
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 1.8e-14 82.8 107 43.0
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 1.8e-14 82.8 107 43.0
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 1.8e-14 82.8 107 43.0
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 1.8e-14 82.8 107 43.0
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 1.8e-14 82.8 107 44.9
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 1.8e-14 82.8 107 43.0
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 1.8e-14 82.8 106 42.5
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 1.8e-14 82.8 108 42.6
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 1.8e-14 82.8 109 45.0
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 1.8e-14 82.8 107 42.1
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 2.3e-14 82.4 107 43.0
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 2.3e-14 82.4 110 43.6
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 2.3e-14 82.4 110 42.7
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.3e-14 82.4 108 45.4
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.3e-14 82.4 107 43.0
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.3e-14 82.4 107 43.0
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 2.3e-14 82.4 107 50.5
TPR.G34985 Trifolium pratense HOM05D003234 ORTHO05D003635 2.3e-14 82.4 107 53.3
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 3.0e-14 82.0 107 43.0
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 3.0e-14 82.0 112 42.9
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.0e-14 82.0 108 45.4
Gohir.D10G092900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.0e-14 82.0 107 49.5
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 3.0e-14 82.0 109 43.1
CiPaw.02G016600 Carya illinoinensis HOM05D003234 ORTHO05D003635 3.9e-14 81.6 107 52.3
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 3.9e-14 81.6 106 39.6
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 3.9e-14 81.6 109 43.1
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 3.9e-14 81.6 110 42.7
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 5.1e-14 81.3 107 43.9
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 5.1e-14 81.3 107 42.1
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 5.1e-14 81.3 108 46.3
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 5.1e-14 81.3 107 43.9
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 6.7e-14 80.9 107 41.1
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 8.7e-14 80.5 107 40.2
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 8.7e-14 80.5 108 44.4
Rhsim06G0008900 Rhododendron simsii HOM05D003234 ORTHO05D003635 8.7e-14 80.5 108 41.7
arahy.Tifrunner.gnm1.ann1.F5AS58 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.1e-13 80.1 107 55.1
arahy.Tifrunner.gnm1.ann1.WI3JHU Arachis hypogaea HOM05D003234 ORTHO05D003635 1.1e-13 80.1 107 55.1
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 1.1e-13 80.1 107 42.1
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 1.1e-13 80.1 110 42.7
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.5e-13 79.7 107 42.1
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 1.5e-13 79.7 107 43.0
Gohir.A10G095000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.9e-13 79.3 107 48.6
Gorai.011G102100 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.9e-13 79.3 107 48.6
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 2.5e-13 79.0 107 40.2
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 4.3e-13 78.2 108 44.4
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 5.6e-13 77.8 107 41.1
Atru.chr3.563 Acer truncatum HOM05D003234 ORTHO05D003635 7.4e-13 77.4 107 52.3
Gohir.D12G065100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.6e-12 76.3 107 49.5
Gorai.008G068300 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.6e-12 76.3 107 49.5
Lalb_Chr08g0246351 Lupinus albus HOM05D003234 ORTHO05D003635 1.6e-12 76.3 127 40.2
Thecc.01G037000 Theobroma cacao HOM05D003234 ORTHO05D003635 1.6e-12 76.3 107 49.5
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 2.1e-12 75.9 109 42.2
SHI08007 Sapria himalayana HOM05D003234 ORTHO05D003635 2.1e-12 75.9 115 42.6
Lalb_Chr11g0061721 Lupinus albus HOM05D003234 ORTHO05D003635 2.8e-12 75.5 115 40.9
unitig_744.g24608 Utricularia gibba HOM05D003234 ORTHO05D003635 3.7e-12 75.1 110 40.9
Aqoxy5G01058 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 4.8e-12 74.7 110 42.7
vmacro04393 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 4.8e-12 74.7 107 40.2
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 8.2e-12 73.9 107 42.1
Glyma.01G175400 Glycine max HOM05D003234 ORTHO05D003635 1.1e-11 73.6 107 51.4
MBI05_g27809_MAGBIO Magnolia biondii HOM05D003234 ORTHO05D003635 1.1e-11 73.6 108 45.4
HanXRQChr12g0366591 Helianthus annuus HOM05D003234 ORTHO05D003635 1.4e-11 73.2 108 43.5
QL02p013773 Quercus lobata HOM05D003234 ORTHO05D003635 1.4e-11 73.2 131 35.1
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 1.4e-11 73.2 107 42.1
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 1.4e-11 73.2 110 41.8
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 1.4e-11 73.2 110 41.8
Lsat_1_v5_gn_8_27741 Lactuca sativa HOM05D003234 ORTHO05D003635 1.8e-11 72.8 105 41.9
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 4.0e-11 71.6 107 39.3
CSS0034652 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 4.0e-11 71.6 107 45.8
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 4.0e-11 71.6 110 40.9
SGA_v2.0_scaffold276G46636 Striga asiatica HOM05D003234 ORTHO05D003635 5.3e-11 71.2 126 41.3
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 6.9e-11 70.9 107 39.3
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 6.9e-11 70.9 110 40.9
Glyma.11G067600 Glycine max HOM05D003234 ORTHO05D003635 6.9e-11 70.9 107 50.5
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 9.0e-11 70.5 107 42.1
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 1.2e-10 70.1 107 39.3
Dinv39975 Davidia involucrata HOM05D003234 ORTHO05D003635 2.0e-10 69.3 106 48.1
Os03g0669600 Oryza sativa ssp. japonica HOM05D003234 ORTHO05D003635 3.4e-10 68.6 107 48.6
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 4.5e-10 68.2 72 51.4
CAN.G358.101 Capsicum annuum HOM05D003234 ORTHO05D003635 3.8e-09 65.1 107 43.9
TAR628G0584 Trochodendron aralioides HOM05D003234 ORTHO05D003635 8.4e-09 63.9 89 40.4
Sopen02g030060 Solanum pennellii HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 45.8
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 1.1e-08 63.5 85 38.8
Phvul.002G029601 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 1.9e-08 62.8 107 46.7
TAR381G0421 Trochodendron aralioides HOM05D003234 ORTHO05D003635 1.9e-08 62.8 70 57.1
vmacro21831 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 1.9e-08 62.8 147 31.3
HanXRQChr14g0428701 Helianthus annuus HOM05D003234 ORTHO05D003635 2.5e-08 62.4 110 40.0
Eucgr.I02454 Eucalyptus grandis HOM05D003234 ORTHO05D003635 2.1e-07 59.3 107 42.1
CDE09G0257 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 2.7e-07 58.9 107 37.4
Sabra02G0010200 Salix brachista HOM05D003234 ORTHO05D003635 4.6e-07 58.2 70 45.7
Peaxi162Scf00064g01012 Petunia axillaris HOM05D003234 ORTHO05D003635 7.9e-07 57.4 70 42.9
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 7.9e-07 57.4 65 49.2
Os03g0227500 Oryza sativa ssp. japonica HOM05D003234 ORTHO05D003635 1.0e-06 57.0 73 56.2
Sabra05G0191800 Salix brachista HOM05D003234 ORTHO05D003635 1.0e-06 57.0 75 40.0
CDE02G3043 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 3.0e-06 55.5 56 50.0
Dinv26826 Davidia involucrata HOM05D003234 ORTHO05D003635 3.0e-06 55.5 50 64.0


User provided reference genes

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