Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00002 Aquilegia oxysepala HOM05D006123 ORTHO05D007578 2.3e-216 755.4 399 100.0
TAR374G1410 Trochodendron aralioides HOM05D006123 ORTHO05D007578 4.2e-122 442.2 339 68.7
Hma1.2p1_0073F.1_g038620 Hydrangea macrophylla HOM05D006123 ORTHO05D007578 1.6e-116 423.7 349 64.8
CSS0037190 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 2.7e-116 422.9 354 63.6
Manes.08G098100 Manihot esculenta HOM05D006123 ORTHO05D007578 1.5e-114 417.2 342 64.3
Gohir.D11G063700 Gossypium hirsutum HOM05D006123 ORTHO05D007578 2.5e-114 416.4 373 61.1
Gorai.007G068900 Gossypium raimondii HOM05D006123 ORTHO05D007578 5.6e-114 415.2 373 60.9
Gohir.A11G059600 Gossypium hirsutum HOM05D006123 ORTHO05D007578 9.5e-114 414.5 373 60.3
Ciclev10028563m.g Citrus clementina HOM05D006123 ORTHO05D007578 1.2e-113 414.1 340 62.9
Dinv07617 Davidia involucrata HOM05D006123 ORTHO05D007578 1.2e-113 414.1 352 62.8
Actinidia13519 Actinidia chinensis HOM05D006123 ORTHO05D007578 1.0e-112 411.0 352 62.2
Atru.chr12.1487 Acer truncatum HOM05D006123 ORTHO05D007578 5.2e-112 408.7 339 62.8
Prupe.1G210000 Prunus persica HOM05D006123 ORTHO05D007578 7.5e-111 404.8 326 64.4
Sc07g0008580 Simmondsia chinensis HOM05D006123 ORTHO05D007578 9.8e-111 404.4 387 56.8
PGR102G0396 Punica granatum HOM05D006123 ORTHO05D007578 1.3e-110 404.1 382 57.3
GSVIVG01001139001 Vitis vinifera HOM05D006123 ORTHO05D007578 2.2e-110 403.3 315 67.9
QL03p046914 Quercus lobata HOM05D006123 ORTHO05D007578 4.9e-110 402.1 390 57.2
Duzib264G0674 Durio zibethinus HOM05D006123 ORTHO05D007578 1.9e-109 400.2 373 58.2
CiPaw.05G096700 Carya illinoinensis HOM05D006123 ORTHO05D007578 5.4e-109 398.7 327 63.6
Haze_12544 Corylus avellana HOM05D006123 ORTHO05D007578 3.5e-108 396.0 371 58.0
Eucgr.B03575 Eucalyptus grandis HOM05D006123 ORTHO05D007578 6.0e-108 395.2 332 63.3
Thecc.01G233200 Theobroma cacao HOM05D006123 ORTHO05D007578 1.0e-107 394.4 349 60.7
AUR62007355 Chenopodium quinoa HOM05D006123 ORTHO05D007578 1.7e-107 393.7 347 59.1
Ah.07g200930 Amaranthus hybridus HOM05D006123 ORTHO05D007578 8.6e-107 391.3 331 60.1
TWI36G1213 Tripterygium wilfordii HOM05D006123 ORTHO05D007578 1.5e-106 390.6 375 55.7
THA.LOC104823032 Tarenaya hassleriana HOM05D006123 ORTHO05D007578 3.3e-106 389.4 356 58.4
MD13G1135300 Malus domestica HOM05D006123 ORTHO05D007578 7.3e-106 388.3 326 62.0
Potri.001G072200 Populus trichocarpa HOM05D006123 ORTHO05D007578 7.3e-106 388.3 370 58.1
Sabra01G0050800 Salix brachista HOM05D006123 ORTHO05D007578 7.3e-106 388.3 369 58.5
CsaV3_6G007640 Cucumis sativus L. HOM05D006123 ORTHO05D007578 2.1e-105 386.7 388 54.1
Hund14375 Selenicereus undatus HOM05D006123 ORTHO05D007578 2.8e-105 386.3 383 54.8
SalBow2G0521 Salvia bowleyana HOM05D006123 ORTHO05D007578 6.2e-105 385.2 323 63.8
ClCG06G001650 Citrullus lanatus HOM05D006123 ORTHO05D007578 1.1e-104 384.4 385 54.5
Cpa.g.sc252.15 Carica papaya HOM05D006123 ORTHO05D007578 1.8e-104 383.6 374 55.1
MELO3C022368.2 Cucumis melo HOM05D006123 ORTHO05D007578 6.8e-104 381.7 381 54.6
RcHm_v2.0_Chr4g0428181 Rosa chinensis HOM05D006123 ORTHO05D007578 1.5e-103 380.6 371 56.1
ATR0582G035 Amborella trichopoda HOM05D006123 ORTHO05D007578 3.4e-103 379.4 332 61.7
FAN07G1474 Fragaria x ananassa HOM05D006123 ORTHO05D007578 3.4e-103 379.4 375 55.5
EL10Ac5g12009 Beta vulgaris HOM05D006123 ORTHO05D007578 4.4e-103 379.0 380 53.2
FvH4_4g21990 Fragaria vesca HOM05D006123 ORTHO05D007578 7.5e-103 378.3 374 55.1
Sed0027865 Sechium edule HOM05D006123 ORTHO05D007578 2.2e-102 376.7 377 56.5
Aa31LG10G7030 Aethionema arabicum HOM05D006123 ORTHO05D007578 4.9e-102 375.6 377 54.4
Sp5g10290 Schrenkiella parvula HOM05D006123 ORTHO05D007578 4.9e-102 375.6 379 54.6
CDE07G0286 Ceratophyllum demersum HOM05D006123 ORTHO05D007578 1.6e-100 370.5 387 54.8
C08p27270 Brassica napus HOM05D006123 ORTHO05D007578 3.5e-100 369.4 380 54.5
BolC8t50344H Brassica oleracea HOM05D006123 ORTHO05D007578 3.5e-100 369.4 380 54.5
PSO478G0970 Papaver somniferum HOM05D006123 ORTHO05D007578 4.6e-100 369.0 349 58.5
CARHR161640 Cardamine hirsuta HOM05D006123 ORTHO05D007578 2.3e-99 366.7 332 58.7
BcaB01g00454 Brassica carinata HOM05D006123 ORTHO05D007578 8.6e-99 364.8 380 54.2
A09p45080 Brassica napus HOM05D006123 ORTHO05D007578 1.9e-98 363.6 380 52.9
AL5G32490 Arabidopsis lyrata HOM05D006123 ORTHO05D007578 5.6e-98 362.1 375 54.4
BraA09t39969Z Brassica rapa HOM05D006123 ORTHO05D007578 7.3e-98 361.7 380 53.7
MBI07_g11054_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 9.5e-98 361.3 336 57.1
AT3G51980 Arabidopsis thaliana HOM05D006123 ORTHO05D007578 4.7e-97 359.0 375 53.9
Sabra03G0115100 Salix brachista HOM05D006123 ORTHO05D007578 4.7e-97 359.0 291 64.9
BcaB01g00394 Brassica carinata HOM05D006123 ORTHO05D007578 1.8e-96 357.1 377 52.5
Carub.0005s1833 Capsella rubella HOM05D006123 ORTHO05D007578 1.8e-96 357.1 375 53.6
Cc11_g14840 Coffea canephora HOM05D006123 ORTHO05D007578 1.8e-96 357.1 330 59.7
Migut.K01149 Erythranthe guttata HOM05D006123 ORTHO05D007578 1.8e-96 357.1 337 57.3
VMungo0540G0877 Vigna mungo HOM05D006123 ORTHO05D007578 1.8e-96 357.1 327 58.4
HPP92_025319 Vanilla planifolia HOM05D006123 ORTHO05D007578 7.6e-95 351.7 391 49.6
CSS0017548 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 8.4e-94 348.2 282 65.2
Solyc04g009320.3 Solanum lycopersicum HOM05D006123 ORTHO05D007578 8.4e-94 348.2 341 54.8
PGSC0003DMG400032561 Solanum tuberosum HOM05D006123 ORTHO05D007578 8.4e-94 348.2 341 54.5
Oeu036874.2 Olea europaea HOM05D006123 ORTHO05D007578 2.4e-93 346.7 423 50.6
DCAR_023486 Daucus carota HOM05D006123 ORTHO05D007578 3.2e-93 346.3 424 48.8
COL.COLO4_15650 Corchorus olitorius HOM05D006123 ORTHO05D007578 4.1e-93 345.9 327 59.0
Lj3C1079T4 Lonicera japonica HOM05D006123 ORTHO05D007578 4.1e-93 345.9 330 58.2
Lj6g0015569 Lotus japonicus HOM05D006123 ORTHO05D007578 7.1e-93 345.1 371 52.0
arahy.Tifrunner.gnm1.ann1.BTS312 Arachis hypogaea HOM05D006123 ORTHO05D007578 9.2e-93 344.7 346 55.8
Lsat_1_v5_gn_4_1741 Lactuca sativa HOM05D006123 ORTHO05D007578 1.6e-92 344.0 332 54.2
arahy.Tifrunner.gnm1.ann1.9L3MVK Arachis hypogaea HOM05D006123 ORTHO05D007578 2.7e-92 343.2 346 55.5
arahy.Tifrunner.gnm1.ann1.XG2HYZ Arachis hypogaea HOM05D006123 ORTHO05D007578 2.7e-92 343.2 346 55.5
PGSC0003DMG400013211 Solanum tuberosum HOM05D006123 ORTHO05D007578 2.7e-92 343.2 334 54.5
Sopen04g004440 Solanum pennellii HOM05D006123 ORTHO05D007578 6.0e-92 342.0 327 55.7
HPP92_007055 Vanilla planifolia HOM05D006123 ORTHO05D007578 6.0e-92 342.0 380 51.8
Lalb_Chr12g0202061 Lupinus albus HOM05D006123 ORTHO05D007578 7.8e-92 341.7 374 51.1
ECA234G2504 Erigeron canadensis HOM05D006123 ORTHO05D007578 1.0e-91 341.3 327 56.0
Psat5g111880 Pisum sativum HOM05D006123 ORTHO05D007578 1.3e-91 340.9 325 56.0
TPR.G310 Trifolium pratense HOM05D006123 ORTHO05D007578 2.3e-91 340.1 379 51.2
Medtr3g080080 Medicago truncatula HOM05D006123 ORTHO05D007578 3.9e-91 339.3 381 50.4
SEGI_34276 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 3.9e-91 339.3 334 55.1
HanXRQChr16g0516431 Helianthus annuus HOM05D006123 ORTHO05D007578 2.5e-90 336.7 331 54.7
Nitab4.5_0002113g0090 Nicotiana tabacum HOM05D006123 ORTHO05D007578 1.1e-88 331.3 417 46.3
Os09g0512700 Oryza sativa ssp. japonica HOM05D006123 ORTHO05D007578 1.4e-88 330.9 326 54.3
SEGI_37385 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 5.2e-88 328.9 325 55.7
MBI11_g04258_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 7.6e-87 325.1 282 62.8
Zm00001eb318160 Zea mays HOM05D006123 ORTHO05D007578 1.7e-86 323.9 346 51.7
Ca_16273_v3 Cicer arietinum L. HOM05D006123 ORTHO05D007578 2.2e-86 323.6 317 54.9
CAN.G624.16 Capsicum annuum HOM05D006123 ORTHO05D007578 3.8e-86 322.8 378 47.4
AUR62018638 Chenopodium quinoa HOM05D006123 ORTHO05D007578 7.8e-84 315.1 275 59.6
unitig_749.g13336 Utricularia gibba HOM05D006123 ORTHO05D007578 2.3e-83 313.5 395 46.6
FAN12G4288 Fragaria x ananassa HOM05D006123 ORTHO05D007578 4.0e-80 302.8 304 54.6
vmacro15977 Vaccinium macrocarpon HOM05D006123 ORTHO05D007578 9.0e-80 301.6 479 40.9
SGA_v2.0_scaffold258G45757 Striga asiatica HOM05D006123 ORTHO05D007578 5.8e-79 298.9 260 61.2
Phvul.006G013100 Phaseolus vulgaris HOM05D006123 ORTHO05D007578 1.9e-77 293.9 259 59.1
Thhalv10010449m.g Eutrema salsugineum HOM05D006123 ORTHO05D007578 4.6e-76 289.3 267 58.4
Peaxi162Scf00760g00014 Petunia axillaris HOM05D006123 ORTHO05D007578 1.3e-73 281.2 331 47.7
Pp3c20_2600 Physcomitrium patens HOM05D006123 ORTHO05D007578 8.4e-70 268.5 385 43.9
Mapoly0124s0025 Marchantia polymorpha HOM05D006123 ORTHO05D007578 4.2e-69 266.2 330 47.6
Rhsim12G0090900 Rhododendron simsii HOM05D006123 ORTHO05D007578 1.6e-68 264.2 229 60.3
SMO367G0194 Selaginella moellendorffii HOM05D006123 ORTHO05D007578 2.3e-67 260.4 322 47.8
Nn3g16171 Nelumbo nucifera HOM05D006123 ORTHO05D007578 4.5e-63 246.1 334 46.4
Potri.003G158701 Populus trichocarpa HOM05D006123 ORTHO05D007578 8.4e-62 241.9 197 62.9
CBR_g16829 Chara braunii HOM05D006123 ORTHO05D007578 2.8e-57 226.9 312 40.1
Nitab4.5_0007261g0070 Nicotiana tabacum HOM05D006123 ORTHO05D007578 4.8e-57 226.1 217 56.2
Glyma.20G054400 Glycine max HOM05D006123 ORTHO05D007578 5.7e-42 176.0 174 54.6
Zm00001eb097710 Zea mays HOM05D006123 ORTHO05D007578 7.4e-42 175.6 224 49.6
Migut.H01174 Erythranthe guttata HOM05D006123 ORTHO05D007578 5.9e-39 166.0 141 61.7
Lj2g0003712 Lotus japonicus HOM05D006123 ORTHO05D007578 1.1e-37 161.8 205 48.3
AagrBONN_evm.TU.Sc2ySwM_344.168 Anthoceros agrestis HOM05D006123 ORTHO05D007578 5.1e-35 152.9 316 34.5
Lsat_1_v5_gn_6_11200 Lactuca sativa HOM05D001489 ORTHO05D007578 8.5e-30 135.6 246 37.0
Glyma.20G054300 Glycine max HOM05D006123 ORTHO05D007578 4.4e-26 123.2 96 66.7
Cre07.g323500 Chlamydomonas reinhardtii HOM05D006123 ORTHO05D007578 5.9e-23 112.8 219 33.3
SHI51501 Sapria himalayana HOM05D006123 ORTHO05D007578 1.4e-19 101.7 151 43.0
SHI10577 Sapria himalayana HOM05D006123 ORTHO05D007578 3.0e-19 100.5 151 42.4
AUR62039304 Chenopodium quinoa HOM05D006123 ORTHO05D007578 2.6e-18 97.4 105 52.4
PSO339G0014 Papaver somniferum HOM05D003692 ORTHO05D004295 4.4e-18 96.7 271 29.9
PSO513G0124 Papaver somniferum HOM05D003692 ORTHO05D004295 3.7e-17 93.6 271 29.9
Pp3c5_26180 Physcomitrium patens HOM05D003692 ORTHO05D004295 9.1e-16 89.0 262 28.2
PSO478G2467 Papaver somniferum HOM05D003692 ORTHO05D004295 1.2e-15 88.6 262 27.5
FvH4_6g11350 Fragaria vesca HOM05D003692 ORTHO05D004295 4.5e-15 86.7 265 29.8
FAN05G1146 Fragaria x ananassa HOM05D003692 ORTHO05D004295 4.5e-15 86.7 265 29.8
FAN14G0506 Fragaria x ananassa HOM05D003692 ORTHO05D004295 4.5e-15 86.7 265 29.8
FAN02G3395 Fragaria x ananassa HOM05D003692 ORTHO05D004295 1.0e-14 85.5 265 29.8
FAN14G3612 Fragaria x ananassa HOM05D003692 ORTHO05D004295 1.0e-14 85.5 265 29.4
MSTRG.19074 Avicennia marina HOM05D003692 ORTHO05D004295 2.2e-14 84.3 299 26.4
CDE04G2001 Ceratophyllum demersum HOM05D006123 ORTHO05D007578 2.2e-14 84.3 81 56.8
FAN09G2852 Fragaria x ananassa HOM05D003692 ORTHO05D004295 2.9e-14 84.0 267 29.6
Lj3g0027938 Lotus japonicus HOM05D003692 ORTHO05D004295 5.5e-13 79.7 276 27.2
AL6G11380 Arabidopsis lyrata HOM05D003692 ORTHO05D004295 1.2e-12 78.6 265 26.4
CBR_g66724 Chara braunii HOM05D003692 ORTHO05D004295 1.2e-12 78.6 274 25.9
MBI11_g33503_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 1.6e-12 78.2 52 69.2
FvH4_5g15390 Fragaria vesca HOM05D003692 ORTHO05D004295 4.7e-12 76.6 263 28.9
FAN18G0330 Fragaria x ananassa HOM05D003692 ORTHO05D004295 4.7e-12 76.6 263 28.9
Migut.J00308 Erythranthe guttata HOM05D003692 ORTHO05D004295 8.8e-11 72.4 320 25.0
BolC4t24736H Brassica oleracea HOM05D006123 ORTHO05D007578 2.6e-10 70.9 68 51.5
BcaC09g49821 Brassica carinata HOM05D006123 ORTHO05D007578 5.7e-10 69.7 67 50.7
BcaC09g49825 Brassica carinata HOM05D006123 ORTHO05D007578 5.7e-10 69.7 67 50.7
C01p32570 Brassica napus HOM05D006123 ORTHO05D007578 5.7e-10 69.7 67 50.7
BcaB01g00386 Brassica carinata HOM05D006123 ORTHO05D007578 6.3e-09 66.2 51 58.8
Cfa023403 Carpinus fangiana HOM05D006123 ORTHO05D007578 1.1e-08 65.5 158 30.4
MCO07G742 Micromonas commoda HOM05D006123 ORTHO05D007578 5.4e-08 63.2 158 32.3
PRCOL_00004534 Prasinoderma coloniale HOM05D006123 ORTHO05D007578 5.4e-08 63.2 307 26.4
Sopen11g017280 Solanum pennellii HOM05D006123 ORTHO05D000001 1.0e-06 58.9 72 43.1
FAN13G1535 Fragaria x ananassa HOM05D003692 ORTHO05D004295 2.3e-06 57.8 208 26.4


User provided reference genes

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