Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 4.3e-113 411.4 213 100.0
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 6.3e-72 274.6 220 70.9
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 1.1e-71 273.9 225 68.0
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 1.4e-71 273.5 222 68.9
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 5.3e-71 271.6 219 72.1
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 4.5e-70 268.5 221 67.9
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 4.5e-70 268.5 221 67.9
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 5.9e-70 268.1 213 69.0
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 2.9e-69 265.8 231 64.9
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 5.0e-69 265.0 221 65.2
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 1.1e-68 263.8 219 67.6
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.1e-68 263.8 220 67.3
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 1.4e-68 263.5 221 66.1
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.4e-68 263.5 220 67.3
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 5.5e-68 261.5 216 68.1
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 9.4e-68 260.8 227 65.6
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.2e-67 260.4 220 67.3
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 1.2e-67 260.4 220 68.2
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 1.4e-66 256.9 223 63.7
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 1.8e-66 256.5 220 66.8
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 3.0e-66 255.8 222 65.3
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 3.9e-66 255.4 216 67.1
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 6.7e-66 254.6 217 65.4
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 8.8e-66 254.2 217 65.4
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 4.8e-64 248.4 221 64.3
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 6.3e-64 248.1 220 62.7
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 6.3e-64 248.1 220 65.5
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 1.1e-63 247.3 166 75.9
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 1.4e-63 246.9 165 80.6
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 1.4e-63 246.9 165 80.6
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 1.4e-63 246.9 226 63.3
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 1.8e-63 246.5 269 55.4
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 1.8e-63 246.5 167 74.9
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 2.4e-63 246.1 214 64.5
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 4.1e-63 245.4 167 75.4
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 5.3e-63 245.0 222 62.6
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 5.3e-63 245.0 169 75.1
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 6.9e-63 244.6 260 58.8
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 9.1e-63 244.2 217 61.8
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.5e-62 243.4 154 80.5
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.5e-62 243.4 221 65.6
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 2.0e-62 243.0 169 77.5
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 3.4e-62 242.3 236 59.7
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 4.5e-62 241.9 200 64.5
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 4.5e-62 241.9 218 61.5
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.0e-61 240.7 224 62.1
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 1.3e-61 240.4 153 81.7
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.3e-61 240.4 220 65.0
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 1.3e-61 240.4 205 64.9
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 1.3e-61 240.4 154 79.9
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 1.7e-61 240.0 154 79.2
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 1.7e-61 240.0 154 79.2
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 2.9e-61 239.2 154 78.6
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 5.0e-61 238.4 213 63.4
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 5.0e-61 238.4 174 71.8
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 5.0e-61 238.4 174 71.8
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 5.0e-61 238.4 166 73.5
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 1.9e-60 236.5 172 70.9
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 5.5e-60 235.0 217 63.6
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.2e-59 233.8 242 57.0
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 2.1e-59 233.0 213 62.4
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 2.1e-59 233.0 131 87.8
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 3.6e-59 232.3 219 60.3
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 4.7e-59 231.9 203 64.0
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 4.7e-59 231.9 221 60.6
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 4.7e-59 231.9 207 62.3
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 6.1e-59 231.5 204 67.6
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 1.4e-58 230.3 217 59.0
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.9e-58 228.8 243 59.3
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 5.1e-58 228.4 242 58.3
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 1.1e-57 227.3 285 51.2
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 1.5e-57 226.9 230 61.7
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 2.0e-57 226.5 219 59.4
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 3.3e-57 225.7 133 84.2
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 5.7e-57 224.9 130 85.4
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 5.7e-57 224.9 219 58.9
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 7.4e-57 224.6 219 58.9
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 7.4e-57 224.6 216 57.9
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 9.7e-57 224.2 219 58.0
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 9.7e-57 224.2 219 58.9
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 9.7e-57 224.2 219 58.9
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 9.7e-57 224.2 217 58.1
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 1.3e-56 223.8 219 58.4
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 1.3e-56 223.8 219 58.4
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 1.3e-56 223.8 221 57.5
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 1.7e-56 223.4 217 58.1
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 3.7e-56 222.2 217 57.6
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 6.3e-56 221.5 215 57.7
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 6.3e-56 221.5 209 60.8
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 6.3e-56 221.5 130 83.8
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.1e-55 220.7 195 64.6
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 1.4e-55 220.3 152 75.0
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 2.4e-55 219.5 172 65.7
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 2.4e-55 219.5 155 74.8
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 3.1e-55 219.2 221 54.8
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 3.1e-55 219.2 215 58.6
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 4.1e-55 218.8 216 55.1
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 5.3e-55 218.4 215 55.8
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 5.3e-55 218.4 221 57.0
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 3.5e-54 215.7 124 85.5
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 1.3e-53 213.8 200 59.5
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 3.8e-53 212.2 129 80.6
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 6.5e-53 211.5 218 60.1
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 8.5e-53 211.1 148 73.0
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 1.1e-52 210.7 202 61.9
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 2.5e-52 209.5 291 46.4
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 3.2e-52 209.1 120 86.7
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 2.7e-51 206.1 131 76.3
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 4.7e-51 205.3 221 56.1
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 4.7e-51 205.3 196 64.8
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 4.0e-50 202.2 133 71.4
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 6.7e-50 201.4 131 75.6
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.1e-49 200.7 218 56.4
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 1.7e-48 196.8 189 59.8
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 3.7e-48 195.7 204 54.9
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 3.7e-48 195.7 173 63.6
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 3.7e-48 195.7 203 54.7
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 4.8e-48 195.3 139 71.2
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 1.6e-46 190.3 203 55.2
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 2.0e-46 189.9 186 58.1
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 2.7e-46 189.5 159 59.7
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 6.5e-45 184.9 213 53.1
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 1.5e-44 183.7 197 52.3
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 9.4e-44 181.0 115 74.8
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 3.6e-43 179.1 190 55.8
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 6.1e-43 178.3 169 60.9
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 3.0e-42 176.0 130 66.9
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 1.5e-41 173.7 130 70.0
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 2.0e-41 173.3 172 58.7
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 2.6e-41 172.9 134 68.7
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.3e-40 170.6 131 68.7
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 1.7e-40 170.2 143 65.0
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.8e-40 169.5 174 53.4
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 8.3e-40 167.9 173 53.2
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 1.8e-39 166.8 111 73.0
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.8e-39 166.8 168 56.0
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 4.5e-38 162.2 103 79.6
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 5.9e-38 161.8 136 63.2
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 1.3e-37 160.6 153 59.5
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.2e-37 159.8 171 53.2
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 5.0e-37 158.7 149 59.7
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 1.5e-36 157.1 196 50.5
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 3.2e-36 156.0 133 57.9
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 7.5e-25 118.2 159 44.7
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 1.7e-24 117.1 132 46.2
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 5.6e-20 102.1 62 87.1
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 9.8e-17 91.3 130 40.8
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.7e-16 90.5 88 55.7
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 6.4e-16 88.6 94 56.4
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 3.5e-14 82.8 116 38.8
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 1.8e-10 70.5 51 66.7
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.1e-07 61.2 35 85.7
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 1.9e-07 60.5 39 66.7


User provided reference genes

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