Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02782 Aquilegia oxysepala HOM05D003058 ORTHO05D003464 2.4e-25 117.9 53 100.0
Cfa018864 Carpinus fangiana HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
Haze_07246 Corylus avellana HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
CsaV3_6G042760 Cucumis sativus L. HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
Dinv04859 Davidia involucrata HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
ECA247G2677 Erigeron canadensis HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
Migut.D01240 Erythranthe guttata HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
FvH4_5g07810 Fragaria vesca HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
FAN08G3214 Fragaria x ananassa HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
FAN13G2883 Fragaria x ananassa HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
FAN18G0447 Fragaria x ananassa HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
Lalb_Chr02g0143341 Lupinus albus HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
MD06G1147100 Malus domestica HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
MD14G1161000 Malus domestica HOM05D003058 ORTHO05D003464 2.0e-11 71.6 32 93.8
CANSAT56G1575 Cannabis sativa HOM05D003058 ORTHO05D003464 2.6e-11 71.2 32 90.6
Manes.06G117600 Manihot esculenta HOM05D003058 ORTHO05D003464 2.6e-11 71.2 32 90.6
Prupe.1G584200 Prunus persica HOM05D003058 ORTHO05D003464 2.6e-11 71.2 32 90.6
Sed0006367 Sechium edule HOM05D003058 ORTHO05D003464 2.6e-11 71.2 32 90.6
GSVIVG01008499001 Vitis vinifera HOM05D003058 ORTHO05D003464 2.6e-11 71.2 32 90.6
VMungo0720G2341 Vigna mungo HOM05D003058 ORTHO05D003464 3.4e-11 70.9 32 93.8
Ca_11201_v3 Cicer arietinum L. HOM05D003058 ORTHO05D003464 4.5e-11 70.5 32 90.6
HanXRQChr02g0035201 Helianthus annuus HOM05D003058 ORTHO05D003464 4.5e-11 70.5 32 90.6
Lsat_1_v5_gn_1_29320 Lactuca sativa HOM05D003058 ORTHO05D003464 4.5e-11 70.5 32 90.6
Migut.I00518 Erythranthe guttata HOM05D003058 ORTHO05D003464 5.8e-11 70.1 32 87.5
Eucgr.B01103 Eucalyptus grandis HOM05D003058 ORTHO05D003464 5.8e-11 70.1 32 90.6
Eucgr.J01698 Eucalyptus grandis HOM05D003058 ORTHO05D003464 5.8e-11 70.1 32 90.6
Eucgr.K02742 Eucalyptus grandis HOM05D003058 ORTHO05D003464 5.8e-11 70.1 32 90.6
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 5.8e-11 70.1 32 90.6
HanXRQChr04g0100341 Helianthus annuus HOM05D003058 ORTHO05D003464 5.8e-11 70.1 32 90.6
PGR083G1009 Punica granatum HOM05D003058 ORTHO05D003464 5.8e-11 70.1 32 90.6
Rhsim05G0177100 Rhododendron simsii HOM05D003058 ORTHO05D003464 5.8e-11 70.1 32 90.6
CSS0000294 Camellia sinensis var. sinensis HOM05D003058 ORTHO05D003464 7.6e-11 69.7 32 90.6
CSS0028119 Camellia sinensis var. sinensis HOM05D003058 ORTHO05D003464 7.6e-11 69.7 32 90.6
Manes.14G053700 Manihot esculenta HOM05D003058 ORTHO05D003464 7.6e-11 69.7 32 87.5
Rhsim08G0187400 Rhododendron simsii HOM05D003058 ORTHO05D003464 7.6e-11 69.7 32 90.6
TWI14G0604 Tripterygium wilfordii HOM05D003058 ORTHO05D003464 7.6e-11 69.7 32 90.6
TWI39G0033 Tripterygium wilfordii HOM05D003058 ORTHO05D003464 7.6e-11 69.7 32 90.6
vmacro19221 Vaccinium macrocarpon HOM05D003058 ORTHO05D003464 7.6e-11 69.7 32 90.6
vmacro20469 Vaccinium macrocarpon HOM05D003058 ORTHO05D003464 7.6e-11 69.7 32 90.6
CiPaw.12G037100 Carya illinoinensis HOM05D003058 ORTHO05D003464 9.9e-11 69.3 32 90.6
ClCG01G016480 Citrullus lanatus HOM05D003058 ORTHO05D003464 9.9e-11 69.3 31 93.5
Hma1.2p1_0014F.1_g009730 Hydrangea macrophylla HOM05D003058 ORTHO05D003464 9.9e-11 69.3 32 87.5
Phvul.007G020100 Phaseolus vulgaris HOM05D003058 ORTHO05D003464 9.9e-11 69.3 32 90.6
Potri.015G092500 Populus trichocarpa HOM05D003058 ORTHO05D003464 9.9e-11 69.3 31 93.5
QL10p004470 Quercus lobata HOM05D003058 ORTHO05D003464 9.9e-11 69.3 32 90.6
RcHm_v2.0_Chr7g0190651 Rosa chinensis HOM05D003058 ORTHO05D003464 9.9e-11 69.3 32 90.6
Glyma.10G280800 Glycine max HOM05D003058 ORTHO05D003464 1.3e-10 68.9 32 87.5
Glyma.20G108800 Glycine max HOM05D003058 ORTHO05D003464 1.3e-10 68.9 32 87.5
PSO063G7298 Papaver somniferum HOM05D003058 ORTHO05D003464 1.3e-10 68.9 32 84.4
PSO782G4772 Papaver somniferum HOM05D003058 ORTHO05D003464 1.3e-10 68.9 32 84.4
Atru.chr9.1040 Acer truncatum HOM05D003058 ORTHO05D003464 1.7e-10 68.6 32 87.5
Atru.chr9.1095 Acer truncatum HOM05D003058 ORTHO05D003464 1.7e-10 68.6 32 87.5
arahy.Tifrunner.gnm1.ann1.DKYG6S Arachis hypogaea HOM05D003058 ORTHO05D003464 1.7e-10 68.6 31 90.3
arahy.Tifrunner.gnm1.ann1.XWK90S Arachis hypogaea HOM05D003058 ORTHO05D003464 1.7e-10 68.6 31 90.3
MSTRG.11289 Avicennia marina HOM05D003058 ORTHO05D003464 1.7e-10 68.6 32 87.5
MSTRG.22909 Avicennia marina HOM05D003058 ORTHO05D003464 1.7e-10 68.6 32 87.5
Sabra12G0069800 Salix brachista HOM05D003058 ORTHO05D003464 1.7e-10 68.6 31 90.3
SalBow1G8061 Salvia bowleyana HOM05D003058 ORTHO05D003464 1.7e-10 68.6 32 84.4
SalBow5G3501 Salvia bowleyana HOM05D003058 ORTHO05D003464 1.7e-10 68.6 32 87.5
SalBow5G4523 Salvia bowleyana HOM05D003058 ORTHO05D003464 1.7e-10 68.6 32 87.5
SEGI_41174 Sequoiadendron giganteum HOM05D003058 ORTHO05D003464 1.7e-10 68.6 31 87.1
Solyc08g082755.1 Solanum lycopersicum HOM05D003058 ORTHO05D003464 1.7e-10 68.6 32 87.5
Sopen08g031000 Solanum pennellii HOM05D003058 ORTHO05D003464 1.7e-10 68.6 32 87.5
PGSC0003DMG400012255 Solanum tuberosum HOM05D003058 ORTHO05D003464 1.7e-10 68.6 32 87.5
CiPaw.11G010100 Carya illinoinensis HOM05D003058 ORTHO05D003464 2.2e-10 68.2 32 87.5
Cc04_g09980 Coffea canephora HOM05D003058 ORTHO05D003464 2.2e-10 68.2 32 84.4
Cc03_g13260 Coffea canephora HOM05D003058 ORTHO05D003464 2.9e-10 67.8 32 87.5
Dinv11149 Davidia involucrata HOM05D003058 ORTHO05D003464 2.9e-10 67.8 31 90.3
ECA232G5020 Erigeron canadensis HOM05D001386 ORTHO05D004014 2.9e-10 67.8 31 90.3
HanXRQChr16g0497831 Helianthus annuus HOM05D003058 ORTHO05D003464 2.9e-10 67.8 31 90.3
Actinidia16183 Actinidia chinensis HOM05D003058 ORTHO05D003464 3.8e-10 67.4 32 84.4
Actinidia25596 Actinidia chinensis HOM05D003058 ORTHO05D003464 3.8e-10 67.4 32 84.4
arahy.Tifrunner.gnm1.ann1.DHD00G Arachis hypogaea HOM05D003058 ORTHO05D003464 3.8e-10 67.4 31 87.1
arahy.Tifrunner.gnm1.ann1.EV6WBG Arachis hypogaea HOM05D003058 ORTHO05D003464 3.8e-10 67.4 31 87.1
arahy.Tifrunner.gnm1.ann1.UHEV4X Arachis hypogaea HOM05D003058 ORTHO05D003464 3.8e-10 67.4 31 87.1
EL10Ac8g20149 Beta vulgaris HOM05D003058 ORTHO05D003464 3.8e-10 67.4 31 87.1
CAN.G567.42 Capsicum annuum HOM05D003058 ORTHO05D003464 3.8e-10 67.4 32 84.4
COL.COLO4_28067 Corchorus olitorius HOM05D003058 ORTHO05D003464 3.8e-10 67.4 31 87.1
Nitab4.5_0002367g0100 Nicotiana tabacum HOM05D003058 ORTHO05D003464 3.8e-10 67.4 32 84.4
Nitab4.5_0002793g0040 Nicotiana tabacum HOM05D003058 ORTHO05D003464 3.8e-10 67.4 32 84.4
Peaxi162Scf00074g00542 Petunia axillaris HOM05D003058 ORTHO05D003464 3.8e-10 67.4 32 84.4
Cpa.g.sc190.34 Carica papaya HOM05D003058 ORTHO05D003464 4.9e-10 67.0 31 87.1
DCAR_026215 Daucus carota HOM05D003058 ORTHO05D003464 4.9e-10 67.0 32 81.2
Glyma.07G156300 Glycine max HOM05D003058 ORTHO05D003464 4.9e-10 67.0 31 83.9
Lj5g0005551 Lotus japonicus HOM05D003058 ORTHO05D003464 4.9e-10 67.0 31 87.1
Medtr1g112340 Medicago truncatula HOM05D003058 ORTHO05D003464 4.9e-10 67.0 32 84.4
TPR.G2446 Trifolium pratense HOM05D003058 ORTHO05D003464 4.9e-10 67.0 32 84.4
Duzib068G0787 Durio zibethinus HOM05D003058 ORTHO05D003464 6.4e-10 66.6 31 87.1
Duzib084G0793 Durio zibethinus HOM05D003058 ORTHO05D003464 6.4e-10 66.6 31 87.1
Duzib205G0561 Durio zibethinus HOM05D003058 ORTHO05D003464 6.4e-10 66.6 31 87.1
Gohir.A07G052600 Gossypium hirsutum HOM05D003058 ORTHO05D003464 6.4e-10 66.6 31 87.1
Gohir.A09G246300 Gossypium hirsutum HOM05D003058 ORTHO05D003464 6.4e-10 66.6 31 87.1
Gohir.D07G057000 Gossypium hirsutum HOM05D003058 ORTHO05D003464 6.4e-10 66.6 31 87.1
Gohir.D09G246900 Gossypium hirsutum HOM05D003058 ORTHO05D003464 6.4e-10 66.6 31 87.1
Gohir.D13G181600 Gossypium hirsutum HOM05D003058 ORTHO05D003464 6.4e-10 66.6 31 87.1
Gorai.001G060500 Gossypium raimondii HOM05D003058 ORTHO05D003464 6.4e-10 66.6 31 87.1
Gorai.006G271400 Gossypium raimondii HOM05D003058 ORTHO05D003464 6.4e-10 66.6 31 87.1
HanXRQChr09g0273001 Helianthus annuus HOM05D003058 ORTHO05D003464 6.4e-10 66.6 31 87.1
Nn6g33422 Nelumbo nucifera HOM05D003058 ORTHO05D003464 6.4e-10 66.6 32 84.4
Prupe.5G153900 Prunus persica HOM05D003058 ORTHO05D003464 6.4e-10 66.6 30 90.0
Thecc.03G125400 Theobroma cacao HOM05D003058 ORTHO05D003464 6.4e-10 66.6 31 87.1
Nitab4.5_0000530g0020 Nicotiana tabacum HOM05D003058 ORTHO05D003464 8.4e-10 66.2 32 84.4
Solyc08g008420.3 Solanum lycopersicum HOM05D003058 ORTHO05D003464 8.4e-10 66.2 32 78.1
Sopen08g004280 Solanum pennellii HOM05D003058 ORTHO05D003464 8.4e-10 66.2 32 78.1
PGSC0003DMG402005796 Solanum tuberosum HOM05D003058 ORTHO05D003464 8.4e-10 66.2 32 78.1
AUR62012771 Chenopodium quinoa HOM05D003058 ORTHO05D003464 1.1e-09 65.9 31 83.9
AUR62021887 Chenopodium quinoa HOM05D003058 ORTHO05D003464 1.1e-09 65.9 31 83.9
MELO3C026223.2 Cucumis melo HOM05D003058 ORTHO05D003464 1.1e-09 65.9 32 87.5
CsaV3_1G000720 Cucumis sativus L. HOM05D003058 ORTHO05D003464 1.1e-09 65.9 32 87.5
unitig_85.g27307 Utricularia gibba HOM05D000820 ORTHO05D000760 1.1e-09 65.9 31 83.9
Psat6g231600 Pisum sativum HOM05D003058 ORTHO05D003464 1.4e-09 65.5 32 81.2
Sabra15G0114300 Salix brachista HOM05D003058 ORTHO05D003464 1.4e-09 65.5 31 87.1
Hund18319 Selenicereus undatus HOM05D003058 ORTHO05D003464 1.4e-09 65.5 31 80.6
Sc10g0010410 Simmondsia chinensis HOM05D003058 ORTHO05D003464 1.4e-09 65.5 31 80.6
SGA_v2.0_scaffold37G14620 Striga asiatica HOM05D003058 ORTHO05D003464 1.4e-09 65.5 31 83.9
SGA_v2.0_scaffold5G02876 Striga asiatica HOM05D003058 ORTHO05D003464 1.4e-09 65.5 31 83.9
THA.LOC104825010 Tarenaya hassleriana HOM05D003058 ORTHO05D003464 1.4e-09 65.5 33 87.9
vmacro16665 Vaccinium macrocarpon HOM05D003058 ORTHO05D003464 1.4e-09 65.5 32 81.2
BcaB05g22874 Brassica carinata HOM05D003058 ORTHO05D003464 1.9e-09 65.1 31 80.6
A02p06030 Brassica napus HOM05D003058 ORTHO05D003464 1.9e-09 65.1 31 80.6
BNapus_Darmor_BZH_scaffold_38p01810 Brassica napus HOM05D003058 ORTHO05D003464 1.9e-09 65.1 31 80.6
BolC2t07013H Brassica oleracea HOM05D003058 ORTHO05D003464 1.9e-09 65.1 31 80.6
BraA02t05554Z Brassica rapa HOM05D003058 ORTHO05D003464 1.9e-09 65.1 31 80.6
CAN.G1046.4 Capsicum annuum HOM05D003058 ORTHO05D003464 1.9e-09 65.1 32 81.2
CAN.G792.31 Capsicum annuum HOM05D003058 ORTHO05D003464 1.9e-09 65.1 32 78.1
Ciclev10022969m.g Citrus clementina HOM05D003058 ORTHO05D003464 1.9e-09 65.1 32 84.4
Glyma.15G246900 Glycine max HOM05D003058 ORTHO05D003464 1.9e-09 65.1 32 84.4
THA.LOC104811600 Tarenaya hassleriana HOM05D003058 ORTHO05D003464 1.9e-09 65.1 33 84.8
Aa31sc72G30 Aethionema arabicum HOM05D003058 ORTHO05D003464 2.4e-09 64.7 29 89.7
ATR0686G113 Amborella trichopoda HOM05D003058 ORTHO05D003464 2.4e-09 64.7 31 83.9
Carub.0006s1847 Capsella rubella HOM05D003058 ORTHO05D003464 2.4e-09 64.7 29 86.2
Mapoly0090s0007 Marchantia polymorpha HOM05D003058 ORTHO05D003464 2.4e-09 64.7 32 81.2
Sed0010598 Sechium edule HOM05D003058 ORTHO05D003464 2.4e-09 64.7 32 84.4
SMO118G0466 Selaginella moellendorffii HOM05D003058 ORTHO05D003464 2.4e-09 64.7 31 80.6
AL6G31640 Arabidopsis lyrata HOM05D003058 ORTHO05D003464 3.2e-09 64.3 29 86.2
AT5G20090 Arabidopsis thaliana HOM05D003058 ORTHO05D003464 3.2e-09 64.3 29 86.2
BcaB01g04809 Brassica carinata HOM05D003058 ORTHO05D003464 3.2e-09 64.3 29 86.2
A03p09810 Brassica napus HOM05D003058 ORTHO05D003464 3.2e-09 64.3 29 86.2
C03p11390 Brassica napus HOM05D003058 ORTHO05D003464 3.2e-09 64.3 29 86.2
BolC3t13613H Brassica oleracea HOM05D003058 ORTHO05D003464 3.2e-09 64.3 29 86.2
BraA03t10296Z Brassica rapa HOM05D003058 ORTHO05D003464 3.2e-09 64.3 29 86.2
CARHR192740 Cardamine hirsuta HOM05D003058 ORTHO05D003464 3.2e-09 64.3 29 86.2
Thhalv10015066m.g Eutrema salsugineum HOM05D003058 ORTHO05D003464 3.2e-09 64.3 29 86.2
Potri.012G095133 Populus trichocarpa HOM05D003058 ORTHO05D003464 3.2e-09 64.3 31 80.6
Sp6g24320 Schrenkiella parvula HOM05D003058 ORTHO05D003464 3.2e-09 64.3 29 86.2
Nitab4.5_0009013g0040 Nicotiana tabacum HOM05D003058 ORTHO05D003464 4.2e-09 63.9 32 81.2
Pp3c11_21580 Physcomitrium patens HOM05D003058 ORTHO05D003464 4.2e-09 63.9 32 81.2
Solyc06g071890.3 Solanum lycopersicum HOM05D003058 ORTHO05D003464 4.2e-09 63.9 32 78.1
Sopen06g028170 Solanum pennellii HOM05D003058 ORTHO05D003464 4.2e-09 63.9 32 78.1
PGSC0003DMG400026982 Solanum tuberosum HOM05D003058 ORTHO05D003464 4.2e-09 63.9 32 78.1
Gorai.013G207300 Gossypium raimondii HOM05D003058 ORTHO05D003464 5.5e-09 63.5 31 83.9
Lsat_1_v5_gn_4_76481 Lactuca sativa HOM05D003058 ORTHO05D003464 7.1e-09 63.2 31 80.6
Phvul.008G092700 Phaseolus vulgaris HOM05D003058 ORTHO05D003464 7.1e-09 63.2 31 80.6
Solyc10g051120.3 Solanum lycopersicum HOM05D003058 ORTHO05D003464 7.1e-09 63.2 32 78.1
PGSC0003DMG400008270 Solanum tuberosum HOM05D003058 ORTHO05D003464 7.1e-09 63.2 32 78.1
HPP92_015510 Vanilla planifolia HOM05D003058 ORTHO05D003464 7.1e-09 63.2 32 78.1
Nn1g02027 Nelumbo nucifera HOM05D003058 ORTHO05D003464 9.3e-09 62.8 30 83.3
AagrBONN_evm.TU.Sc2ySwM_368.2498 Anthoceros agrestis HOM05D003058 ORTHO05D003464 1.2e-08 62.4 32 78.1
ClCG06G017740 Citrullus lanatus HOM05D003058 ORTHO05D003464 1.2e-08 62.4 32 84.4
Peaxi162Scf00536g00035 Petunia axillaris HOM05D003058 ORTHO05D003464 1.2e-08 62.4 32 75.0
Zm00001eb212590 Zea mays HOM05D003058 ORTHO05D003464 1.6e-08 62.0 30 80.0
Nitab4.5_0003103g0040 Nicotiana tabacum HOM05D003058 ORTHO05D003464 2.1e-08 61.6 32 75.0
Nitab4.5_0005627g0070 Nicotiana tabacum HOM05D003058 ORTHO05D003464 2.1e-08 61.6 31 80.6
Zm00001eb061480 Zea mays HOM05D003058 ORTHO05D003464 2.1e-08 61.6 30 80.0
Ah.08g213700 Amaranthus hybridus HOM05D000219 ORTHO05D000226 2.7e-08 61.2 33 81.8
Nitab4.5_0000955g0040 Nicotiana tabacum HOM05D003058 ORTHO05D003464 2.7e-08 61.2 32 75.0
Sopen10g022820 Solanum pennellii HOM05D003058 ORTHO05D003464 2.7e-08 61.2 30 80.0
Os09g0373000 Oryza sativa ssp. japonica HOM05D003058 ORTHO05D003464 3.5e-08 60.8 28 85.7
Hund05514 Selenicereus undatus HOM05D003058 ORTHO05D003464 4.6e-08 60.5 31 77.4
Rhsim02G0138200 Rhododendron simsii HOM05D003129 ORTHO05D000043 6.0e-08 60.1 31 80.6
MCO09G314 Micromonas commoda HOM05D003058 ORTHO05D003464 7.9e-08 59.7 31 74.2
Zm00001eb061490 Zea mays HOM05D003058 ORTHO05D003464 1.0e-07 59.3 30 73.3
Cre02.g113100 Chlamydomonas reinhardtii HOM05D003058 ORTHO05D003464 1.8e-07 58.5 33 78.8
HanXRQChr09g0272991 Helianthus annuus HOM05D003058 ORTHO05D003464 3.9e-07 57.4 32 71.9
Os08g0412500 Oryza sativa ssp. japonica HOM05D003058 ORTHO05D003464 3.9e-07 57.4 28 78.6
ECA232G2347 Erigeron canadensis HOM05D003058 ORTHO05D003464 5.1e-07 57.0 32 75.0
Peaxi162Scf00479g00210 Petunia axillaris HOM05D003058 ORTHO05D003464 5.1e-07 57.0 32 68.8
Dinv25677 Davidia involucrata HOM05D003058 ORTHO05D003464 6.7e-07 56.6 31 74.2
SMO118G0374 Selaginella moellendorffii HOM05D003058 ORTHO05D003464 1.1e-06 55.8 38 63.2
unitig_699.g19621 Utricularia gibba HOM05D000820 ORTHO05D000760 1.1e-06 55.8 26 80.8
Manes.17G105800 Manihot esculenta HOM05D003058 ORTHO05D003464 1.5e-06 55.5 31 74.2
PSO675G4277 Papaver somniferum HOM05D003058 ORTHO05D003464 1.9e-06 55.1 30 73.3
SMO169G0135 Selaginella moellendorffii HOM05D003058 ORTHO05D003464 2.5e-06 54.7 24 87.5
PSO063G3365 Papaver somniferum HOM05D003058 ORTHO05D003464 4.3e-06 53.9 30 73.3
PSO541G6491 Papaver somniferum HOM05D003058 ORTHO05D003464 7.4e-06 53.1 28 75.0


User provided reference genes

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