Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 4.7e-103 377.9 191 100.0
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.1e-48 197.2 164 61.6
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 3.1e-46 189.1 164 61.0
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.0e-41 174.1 162 59.9
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 9.4e-35 151.0 165 53.9
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 6.1e-34 148.3 170 54.7
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 1.1e-32 144.1 170 53.5
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 3.1e-30 136.0 161 52.2
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.9e-27 126.7 166 49.4
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 3.2e-27 125.9 164 50.0
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.2e-26 124.0 166 48.2
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 1.6e-26 123.6 158 48.7
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 2.1e-26 123.2 158 49.4
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 3.6e-26 122.5 170 48.2
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 4.7e-26 122.1 164 46.3
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 6.1e-26 121.7 183 45.4
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 7.9e-26 121.3 172 48.3
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 3.0e-25 119.4 166 47.6
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.1e-24 117.5 164 46.3
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 2.6e-24 116.3 161 48.4
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 2.6e-24 116.3 160 46.2
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 3.3e-24 115.9 165 46.1
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 4.4e-24 115.5 164 49.4
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 1.3e-23 114.0 170 44.1
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 2.2e-23 113.2 166 45.2
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 2.8e-23 112.8 180 48.3
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 8.2e-23 111.3 165 45.5
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 8.2e-23 111.3 168 47.0
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.4e-22 110.5 152 48.7
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 2.4e-22 109.8 178 42.7
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 3.1e-22 109.4 161 43.5
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 5.3e-22 108.6 171 44.4
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 2.0e-21 106.7 151 46.4
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 5.9e-21 105.1 165 45.5
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 7.7e-21 104.8 173 43.9
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 3.8e-20 102.4 162 45.7
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 1.5e-19 100.5 138 49.3
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 1.5e-19 100.5 160 43.8
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 9.4e-19 97.8 164 43.9
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 1.6e-18 97.1 140 47.1
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 1.6e-18 97.1 118 50.0
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 2.1e-18 96.7 162 41.4
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 2.1e-18 96.7 162 41.4
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.7e-18 96.3 165 44.2
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 6.1e-18 95.1 138 47.1
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 6.1e-18 95.1 162 44.4
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 6.1e-18 95.1 162 44.4
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 1.0e-17 94.4 165 43.6
CiPaw.13G131800 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.4e-17 94.0 129 41.9
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 1.8e-17 93.6 112 52.7
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 2.3e-17 93.2 164 47.0
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 2.3e-17 93.2 144 46.5
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 2.3e-17 93.2 100 55.0
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 3.0e-17 92.8 169 42.6
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 5.2e-17 92.0 161 40.4
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 6.7e-17 91.7 167 45.5
Thecc.09G276100 Theobroma cacao HOM05D006872 ORTHO05D006261 8.8e-17 91.3 140 41.4
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 3.3e-16 89.4 118 50.0
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 3.3e-16 89.4 107 45.8
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 4.4e-16 89.0 158 43.0
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 4.4e-16 89.0 169 41.4
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 7.5e-16 88.2 118 49.2
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 7.5e-16 88.2 126 46.0
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.3e-15 87.4 83 54.2
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 2.2e-15 86.7 188 36.2
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 3.7e-15 85.9 163 40.5
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 4.8e-15 85.5 163 39.3
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 6.3e-15 85.1 133 39.8
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 1.1e-14 84.3 147 42.9
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 1.4e-14 84.0 102 53.9
Haze_23331 Corylus avellana HOM05D021165 ORTHO05D006261 3.1e-14 82.8 134 40.3
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 4.1e-14 82.4 135 42.2
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 5.3e-14 82.0 78 59.0
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 5.3e-14 82.0 124 42.7
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 7.0e-14 81.6 130 46.9
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 9.1e-14 81.3 142 44.4
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.2e-13 80.9 168 39.3
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 1.2e-13 80.9 97 47.4
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 2.7e-13 79.7 92 52.2
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 2.7e-13 79.7 145 42.8
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 1.3e-12 77.4 136 39.0
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 1.3e-12 77.4 121 44.6
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 1.7e-12 77.0 165 39.4
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 1.7e-12 77.0 100 41.0
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 2.9e-12 76.3 82 58.5
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 2.9e-12 76.3 110 45.5
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 2.9e-12 76.3 155 40.0
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 2.9e-12 76.3 172 40.1
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 5.0e-12 75.5 159 37.7
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 1.1e-11 74.3 109 45.0
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 1.1e-11 74.3 174 37.4
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.9e-11 73.6 98 52.0
QL01p011372 Quercus lobata HOM05D021165 ORTHO05D006261 1.9e-11 73.6 136 37.5
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 1.9e-11 73.6 173 38.2
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 2.5e-11 73.2 136 41.9
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 3.2e-11 72.8 114 40.4
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 3.2e-11 72.8 114 40.4
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 4.2e-11 72.4 117 43.6
QL01p011630 Quercus lobata HOM05D021165 ORTHO05D006261 4.2e-11 72.4 136 36.8
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 5.5e-11 72.0 109 44.0
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 5.5e-11 72.0 134 43.3
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 5.5e-11 72.0 96 52.1
CARHR207010 Cardamine hirsuta HOM05D010494 ORTHO05D006261 7.2e-11 71.6 163 37.4
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 7.2e-11 71.6 100 50.0
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 1.6e-10 70.5 136 39.0
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 2.1e-10 70.1 56 62.5
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.7e-10 69.7 95 46.3
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 3.6e-10 69.3 183 32.2
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 8.0e-10 68.2 112 41.1
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 8.0e-10 68.2 95 46.3
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 8.0e-10 68.2 95 46.3
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 8.0e-10 68.2 95 46.3
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 8.0e-10 68.2 98 48.0
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 2.3e-09 66.6 94 50.0
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 4.0e-09 65.9 94 48.9
Ciclev10029945m.g Citrus clementina HOM05D021165 ORTHO05D006261 5.2e-09 65.5 107 39.3
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 5.2e-09 65.5 100 42.0
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 5.2e-09 65.5 126 35.7
Prupe.6G139500 Prunus persica HOM05D021165 ORTHO05D006261 6.8e-09 65.1 122 36.1
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 6.8e-09 65.1 136 41.2
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 8.8e-09 64.7 69 53.6
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 8.8e-09 64.7 81 50.6
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 1.2e-08 64.3 77 51.9
BcaC06g32348 Brassica carinata HOM05D010494 ORTHO05D006261 1.5e-08 63.9 130 37.7
BolC9t59798H Brassica oleracea HOM05D010494 ORTHO05D006261 1.5e-08 63.9 146 35.6
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 2.0e-08 63.5 116 37.1
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 2.6e-08 63.2 80 48.8
BcaC06g32361 Brassica carinata HOM05D010494 ORTHO05D006261 3.4e-08 62.8 136 36.8
SEGI_37168 Sequoiadendron giganteum HOM05D007970 ORTHO05D009943 4.4e-08 62.4 117 35.9
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 9.8e-08 61.2 154 35.1
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 9.8e-08 61.2 127 33.1
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 9.8e-08 61.2 121 37.2
AL6G16320 Arabidopsis lyrata HOM05D010494 ORTHO05D006261 1.3e-07 60.8 147 35.4
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 1.3e-07 60.8 67 49.3
Rhsim11G0193700 Rhododendron simsii HOM05D007970 ORTHO05D009943 1.3e-07 60.8 77 40.3
BcaC02g09248 Brassica carinata HOM05D006872 ORTHO05D006261 1.7e-07 60.5 101 42.6
C04p40490 Brassica napus HOM05D006872 ORTHO05D006261 1.7e-07 60.5 101 42.6
BolC4t25629H Brassica oleracea HOM05D006872 ORTHO05D006261 1.7e-07 60.5 101 42.6
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 1.7e-07 60.5 57 59.6
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 1.7e-07 60.5 77 41.6
Lsat_1_v5_gn_4_72040 Lactuca sativa HOM05D007970 ORTHO05D009943 1.7e-07 60.5 95 43.2
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 1.7e-07 60.5 128 41.4
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 2.2e-07 60.1 67 52.2
BcaB02g08564 Brassica carinata HOM05D006872 ORTHO05D006261 2.2e-07 60.1 79 51.9
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 2.2e-07 60.1 81 46.9
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 2.2e-07 60.1 132 39.4
AL5G33230 Arabidopsis lyrata HOM05D006872 ORTHO05D006261 2.8e-07 59.7 87 48.3
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 2.8e-07 59.7 175 34.3
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 2.8e-07 59.7 59 50.8
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 3.7e-07 59.3 71 53.5
Migut.J00684 Erythranthe guttata HOM05D006872 ORTHO05D006261 4.8e-07 58.9 78 44.9
CSS0030284 Camellia sinensis var. sinensis HOM05D007970 ORTHO05D009943 6.3e-07 58.5 99 39.4
Gohir.D02G227400 Gossypium hirsutum HOM05D007970 ORTHO05D009943 6.3e-07 58.5 86 38.4
Gorai.005G255300 Gossypium raimondii HOM05D007970 ORTHO05D009943 6.3e-07 58.5 86 38.4
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 8.3e-07 58.2 102 41.2
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 8.3e-07 58.2 71 47.9
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 8.3e-07 58.2 98 44.9
SGA_v2.0_scaffold32G13308 Striga asiatica HOM05D007970 ORTHO05D009943 8.3e-07 58.2 94 39.4
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 1.1e-06 57.8 114 35.1
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 1.1e-06 57.8 83 48.2
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 1.1e-06 57.8 83 48.2
Migut.N01333 Erythranthe guttata HOM05D007970 ORTHO05D009943 1.1e-06 57.8 69 44.9
Rhsim05G0052900 Rhododendron simsii HOM05D007970 ORTHO05D009943 1.1e-06 57.8 116 33.6
SalBow1G5428 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.1e-06 57.8 71 47.9
Solyc01g111820.2 Solanum lycopersicum HOM05D007970 ORTHO05D009943 1.8e-06 57.0 61 52.5
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.4e-06 56.6 102 40.2
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 2.4e-06 56.6 63 50.8
PGSC0003DMG400018628 Solanum tuberosum HOM05D007970 ORTHO05D009943 2.4e-06 56.6 65 46.2
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 3.1e-06 56.2 73 43.8
Aqoxy1G01677 Aquilegia oxysepala HOM05D008821 ORTHO05D010464 5.4e-06 55.5 109 40.4
Cfa009970 Carpinus fangiana HOM05D021165 ORTHO05D006261 5.4e-06 55.5 120 36.7
MBI18_g11239_MAGBIO Magnolia biondii HOM05D008821 ORTHO05D010464 5.4e-06 55.5 108 36.1
Gohir.A03G206000 Gossypium hirsutum HOM05D007970 ORTHO05D009943 7.0e-06 55.1 86 37.2
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 7.0e-06 55.1 109 38.5
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 7.0e-06 55.1 91 45.1
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 9.1e-06 54.7 58 53.4
Oeu045100.1 Olea europaea HOM05D007970 ORTHO05D009943 9.1e-06 54.7 67 47.8


User provided reference genes

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