Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 2.4e-302 1041.6 611 100.0
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 4.7e-205 718.4 626 66.1
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.8e-204 716.5 626 60.5
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 4.0e-204 715.3 623 60.7
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 5.4e-201 704.9 626 65.0
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 6.8e-196 688.0 625 62.7
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.9e-194 681.8 623 61.2
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 4.1e-193 678.7 628 62.9
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 7.0e-193 677.9 626 57.7
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 8.1e-189 664.5 621 56.0
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 5.2e-188 661.8 622 57.1
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 8.9e-188 661.0 637 55.6
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 1.5e-187 660.2 637 55.4
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 3.4e-187 659.1 624 59.8
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 4.4e-187 658.7 621 54.9
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 9.9e-187 657.5 623 55.1
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 9.9e-187 657.5 621 54.9
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 1.3e-186 657.1 625 59.2
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.3e-186 657.1 621 57.5
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 2.2e-186 656.4 639 56.0
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.2e-186 656.4 622 55.1
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.4e-185 653.7 609 56.2
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 4.1e-185 652.1 624 55.3
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 4.1e-185 652.1 621 55.9
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 1.2e-184 650.6 620 57.9
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.0e-183 647.5 625 55.0
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 2.3e-183 646.4 620 55.5
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 3.9e-183 645.6 625 58.2
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 4.3e-182 642.1 624 58.8
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 1.2e-181 640.6 628 58.3
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 1.2e-181 640.6 625 60.5
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 6.8e-180 634.8 626 58.6
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 2.0e-179 633.3 628 53.7
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 9.9e-179 630.9 625 55.4
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.3e-178 630.6 625 54.9
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 3.8e-178 629.0 627 53.6
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 4.9e-178 628.6 627 58.4
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 6.4e-178 628.2 610 58.7
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 1.1e-177 627.5 625 54.9
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 9.2e-177 624.4 620 53.9
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 3.5e-176 622.5 625 52.8
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 5.1e-175 618.6 626 52.7
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 5.1e-175 618.6 624 53.8
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 8.7e-175 617.8 618 57.1
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.1e-174 617.5 622 53.2
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 1.1e-174 617.5 624 57.1
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 1.5e-174 617.1 627 55.8
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 4.3e-174 615.5 626 53.8
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.6e-173 613.6 618 53.6
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 2.8e-173 612.8 626 53.4
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 1.8e-172 610.1 533 60.8
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.8e-172 610.1 536 60.4
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 3.1e-172 609.4 623 56.2
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.1e-172 609.4 625 59.5
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 1.2e-171 607.4 612 56.2
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.5e-171 607.1 624 56.1
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.0e-171 606.7 637 59.5
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 4.4e-171 605.5 616 52.4
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 5.8e-171 605.1 621 52.0
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 9.9e-171 604.4 619 53.0
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 9.9e-171 604.4 626 58.5
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.7e-170 603.6 616 52.4
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 8.4e-170 601.3 625 50.9
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 8.4e-170 601.3 625 55.2
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.1e-169 600.9 622 52.7
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 1.4e-169 600.5 612 52.1
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 7.1e-169 598.2 646 56.3
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 7.1e-169 598.2 615 52.4
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 1.6e-168 597.0 623 55.5
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 6.0e-168 595.1 574 61.3
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 1.0e-167 594.3 601 57.2
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 3.9e-167 592.4 634 53.5
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 5.1e-167 592.0 683 53.9
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 5.1e-167 592.0 615 50.9
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 2.5e-166 589.7 618 57.1
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 2.5e-166 589.7 624 57.2
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 7.3e-166 588.2 622 56.9
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 9.6e-166 587.8 622 56.8
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 3.6e-165 585.9 625 51.8
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 3.1e-164 582.8 605 51.6
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 4.0e-164 582.4 616 52.3
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 5.3e-164 582.0 622 53.4
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 5.3e-164 582.0 613 54.0
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.3e-164 582.0 623 55.4
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 5.3e-164 582.0 629 49.8
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 9.0e-164 581.3 620 53.5
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.5e-163 580.5 607 50.7
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 2.6e-163 579.7 629 49.6
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 4.5e-163 578.9 601 51.7
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.3e-162 577.4 627 48.5
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 3.2e-161 572.8 629 48.6
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.6e-160 570.5 614 56.5
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 6.9e-156 555.1 726 44.2
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 5.8e-155 552.0 518 56.4
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.9e-154 549.7 674 44.7
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.8e-154 549.3 669 46.3
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 5.1e-151 538.9 618 55.0
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 5.6e-150 535.4 620 46.8
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.6e-149 533.9 664 46.4
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.0e-143 514.6 511 52.4
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 1.3e-143 514.2 652 44.8
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 9.0e-140 501.5 602 50.7
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 1.9e-137 493.8 603 49.4
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 2.1e-136 490.3 603 49.6
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 1.4e-127 461.1 513 49.3
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 8.5e-122 441.8 619 45.4
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 8.0e-104 382.1 445 49.2
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.7e-101 374.4 431 55.7
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 2.2e-101 374.0 339 55.2
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 2.7e-99 367.1 325 55.7
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.2e-96 358.2 374 51.9
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 4.4e-94 349.7 442 50.0
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.6e-91 341.3 374 50.5
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.3e-90 337.4 392 45.9
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.6e-90 335.9 374 50.0
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.5e-89 334.7 368 50.5
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.9e-89 334.3 374 49.7
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-81 308.5 373 47.5
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.3e-81 306.6 391 44.8
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.3e-73 280.0 385 42.9
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.2e-68 263.8 373 42.1
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 2.1e-67 261.2 208 61.1
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 2.2e-61 241.1 542 29.7
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 6.6e-58 229.6 215 56.3
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 6.9e-55 219.5 495 28.1
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 2.5e-49 201.1 166 59.6
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 9.9e-46 189.1 167 56.3
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.9e-45 187.6 512 28.7
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.4e-44 184.5 423 27.9
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.5e-41 174.5 510 25.1
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 8.1e-40 169.5 206 48.5
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.0e-38 164.9 199 49.7
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.8e-38 163.3 199 49.2
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.9e-36 158.3 125 61.6
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 6.2e-32 143.3 526 22.8
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 2.0e-30 138.3 140 52.9
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.3e-26 124.8 99 57.6
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 1.6e-24 118.6 204 36.3
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.4e-23 114.8 95 56.8
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 3.9e-18 97.4 55 76.4
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 6.7e-18 96.7 58 75.9
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 4.1e-15 87.4 89 47.2
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 7.9e-11 73.2 44 68.2
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 7.9e-11 73.2 44 68.2
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.4e-10 72.4 71 47.9
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 1.4e-10 72.4 98 44.9
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 2.3e-10 71.6 161 34.2
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.5e-09 68.9 106 35.8


User provided reference genes

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