Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 0.0e+00 1345.5 686 100.0
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 5.5e-279 964.1 689 69.1
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.1e-271 939.9 696 67.1
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 2.1e-262 909.1 700 67.9
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 2.0e-260 902.5 693 64.6
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 9.2e-250 867.1 630 66.5
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 1.1e-247 860.1 697 61.4
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 2.8e-246 855.5 693 61.3
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 2.8e-246 855.5 694 63.8
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 3.6e-246 855.1 693 62.8
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 5.8e-244 847.8 699 61.2
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.7e-243 846.3 692 60.1
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 3.7e-243 845.1 708 59.5
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 6.0e-241 837.8 690 60.9
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.0e-240 837.0 690 59.1
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.0e-240 837.0 694 60.5
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 6.6e-240 834.3 695 60.1
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 1.9e-239 832.8 687 61.9
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 3.3e-239 832.0 682 59.7
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 4.3e-239 831.6 691 59.5
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 2.8e-238 828.9 692 63.9
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 3.1e-237 825.5 699 58.7
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 2.2e-235 819.3 682 59.4
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 2.4e-234 815.8 691 59.8
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 7.1e-234 814.3 685 61.3
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 1.2e-233 813.5 681 58.6
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 2.1e-233 812.8 700 60.1
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.0e-232 810.4 636 61.5
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 3.3e-231 805.4 685 57.8
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 1.6e-230 803.1 688 57.6
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.6e-228 794.3 690 60.1
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 1.4e-226 790.0 694 60.2
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.2e-225 786.9 682 58.5
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 7.8e-225 784.3 688 56.5
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 7.8e-225 784.3 687 56.2
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.3e-222 776.9 686 55.8
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 1.1e-221 773.9 693 55.7
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.4e-221 773.5 691 58.3
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 3.4e-220 768.8 701 57.9
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.5e-220 768.5 735 52.9
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 5.8e-220 768.1 701 57.8
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 4.9e-219 765.0 708 56.8
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.3e-216 756.9 844 50.1
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 4.3e-215 751.9 711 53.6
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 9.6e-215 750.7 727 55.0
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 8.1e-214 747.7 692 54.2
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 3.1e-213 745.7 705 55.6
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 2.6e-212 742.7 693 55.6
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 1.3e-211 740.3 702 53.1
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 1.9e-210 736.5 695 53.8
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.9e-210 736.5 696 54.7
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.9e-210 736.5 695 52.9
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 3.2e-210 735.7 716 54.7
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 5.5e-210 734.9 758 51.1
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.2e-209 733.8 701 54.4
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.7e-209 732.6 703 54.9
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.0e-208 730.7 698 54.3
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 1.3e-208 730.3 695 55.5
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.5e-207 726.1 703 54.8
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 2.6e-204 716.1 725 52.4
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 2.6e-204 716.1 695 54.0
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 3.4e-204 715.7 693 51.7
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 6.5e-203 711.4 700 51.4
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 6.5e-203 711.4 686 55.1
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 2.7e-201 706.1 701 49.9
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.0e-200 704.1 700 53.3
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 4.3e-199 698.7 692 51.6
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 3.7e-198 695.7 651 55.0
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 6.3e-198 694.9 689 51.8
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 7.6e-196 688.0 700 51.1
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.7e-195 686.8 693 52.4
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 1.1e-194 684.1 703 51.1
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 9.3e-194 681.0 688 50.4
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.0e-192 677.6 701 52.8
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.2e-187 659.8 597 54.9
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 2.3e-184 649.8 698 49.0
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 1.1e-183 647.5 644 52.5
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 4.4e-183 645.6 709 50.5
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 7.7e-180 634.8 695 48.5
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 8.5e-179 631.3 642 50.8
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 7.2e-178 628.2 704 48.9
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 4.7e-177 625.5 744 47.8
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.8e-173 613.6 734 46.9
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 3.1e-173 612.8 693 46.8
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.3e-166 590.9 432 67.1
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 2.3e-160 570.1 451 61.4
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 5.9e-156 555.4 580 51.4
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 5.9e-156 555.4 682 44.9
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 8.3e-150 535.0 682 44.3
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 1.1e-146 524.6 552 50.0
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 3.0e-139 500.0 470 57.0
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 4.0e-136 489.6 378 64.3
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 9.2e-133 478.4 646 42.3
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 1.6e-132 477.6 450 55.1
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 3.5e-132 476.5 329 70.8
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 1.7e-131 474.2 610 41.5
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 2.1e-116 424.1 582 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.3e-105 388.3 543 40.0
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 1.3e-97 361.7 260 63.8
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 1.2e-87 328.6 317 52.4
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 3.5e-84 317.0 269 58.7
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.4e-82 309.3 343 44.0
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 3.6e-68 263.8 275 52.4
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 9.7e-66 255.8 289 53.6
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 5.3e-64 250.0 218 56.9
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 1.4e-59 235.3 253 49.4
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 3.0e-59 234.2 514 34.2
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.7e-58 229.9 208 56.7
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.4e-56 225.3 251 45.0
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.0e-56 223.0 336 36.9
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 1.5e-53 215.3 197 56.9
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 6.8e-43 179.9 159 57.2
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 8.3e-41 172.9 159 56.6
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.2e-39 169.1 166 51.8
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-39 168.7 337 31.8
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.5e-37 162.2 233 38.6
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-37 162.2 365 29.9
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.5e-37 159.5 319 32.3
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.5e-31 140.6 185 43.8
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 4.5e-31 140.6 143 49.0
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.7e-30 138.7 189 36.0
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 2.9e-30 137.9 87 71.3
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.5e-29 134.8 212 35.4
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.6e-29 133.7 324 32.4
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 3.6e-28 131.0 133 52.6
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-25 122.5 265 30.6
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 2.2e-25 121.7 149 45.6
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.9e-24 118.6 164 40.9
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 4.1e-24 117.5 472 23.9
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 2.7e-23 114.8 430 24.0
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.0e-23 113.6 206 32.0
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.3e-21 107.8 76 64.5
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 4.3e-21 107.5 104 52.9
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.3e-21 107.5 205 34.6
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.2e-20 105.9 413 25.2
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-20 105.5 76 61.8
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-20 105.5 139 40.3
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.0e-20 103.2 76 60.5
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.6e-18 98.2 146 35.6
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.4e-18 97.4 76 59.2
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 2.7e-15 88.2 136 51.5
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 7.8e-15 86.7 132 47.7
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 1.3e-14 85.9 76 52.6
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 3.0e-14 84.7 87 49.4
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 3.9e-14 84.3 58 67.2
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 8.6e-14 83.2 85 50.6
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 1.9e-13 82.0 63 63.5
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 7.3e-13 80.1 62 59.7
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.3e-13 80.1 171 35.7
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 1.2e-12 79.3 80 46.2
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.2e-12 77.0 73 53.4
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.2e-12 77.0 164 29.3
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 1.1e-11 76.3 58 63.8
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-08 66.2 210 25.7
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.2e-08 63.2 55 47.3
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 9.2e-08 63.2 45 55.6
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 9.2e-08 63.2 47 61.7
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.1e-07 62.0 41 70.7
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.5e-07 61.2 45 64.4
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 6.6e-06 57.0 34 70.6


User provided reference genes

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