Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 0.0e+00 1635.9 814 100.0
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 0.0e+00 1137.5 817 69.0
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 8.4e-311 1070.1 817 65.6
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 1.4e-305 1052.7 814 65.7
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 3.1e-305 1051.6 817 63.9
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.7e-303 1045.8 816 63.5
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 2.9e-303 1045.0 814 65.2
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 6.5e-303 1043.9 816 63.1
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 2.5e-302 1042.0 811 62.6
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 5.3e-297 1024.2 820 63.2
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 1.3e-295 1019.6 820 62.9
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 6.8e-292 1007.3 823 61.6
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 3.1e-289 998.4 821 61.0
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 3.1e-289 998.4 820 61.5
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 4.1e-289 998.0 821 62.7
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.2e-288 996.5 821 61.0
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.2e-288 996.5 812 61.6
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 3.5e-288 995.0 820 61.8
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 4.5e-288 994.6 821 61.4
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 4.5e-288 994.6 815 60.5
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 2.2e-287 992.3 820 61.7
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 1.5e-286 989.6 814 60.6
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 2.5e-286 988.8 819 61.9
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 2.7e-285 985.3 854 58.8
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 4.7e-285 984.6 821 60.0
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 8.0e-285 983.8 821 62.1
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 1.0e-284 983.4 824 59.8
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 3.4e-283 978.4 822 60.3
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 8.3e-282 973.8 821 60.8
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 2.4e-281 972.2 813 59.8
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 4.1e-281 971.5 877 57.5
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 5.4e-281 971.1 821 59.7
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 9.2e-281 970.3 818 59.3
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 2.9e-279 965.3 819 60.3
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 9.5e-278 960.3 810 59.3
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 2.8e-277 958.7 821 62.0
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 4.7e-277 958.0 814 59.2
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 1.2e-275 953.4 810 58.9
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 2.0e-275 952.6 820 60.1
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 5.7e-275 951.0 811 58.8
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 9.8e-275 950.3 814 59.0
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 1.7e-274 949.5 821 59.6
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 1.4e-273 946.4 788 60.4
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.2e-273 945.3 812 58.3
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 4.1e-273 944.9 811 58.7
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 9.2e-273 943.7 818 58.8
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 1.2e-272 943.3 820 59.1
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 4.6e-272 941.4 810 58.8
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 5.0e-271 937.9 811 58.2
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 6.6e-271 937.6 812 58.3
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.5e-270 936.4 813 58.5
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 1.2e-269 933.3 808 58.8
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 4.7e-269 931.4 816 58.2
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 8.0e-269 930.6 838 58.7
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.8e-268 929.5 816 58.3
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.7e-266 922.9 818 57.5
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.1e-265 920.2 873 54.5
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.1e-265 920.2 819 58.2
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 3.2e-265 918.7 818 57.8
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 3.5e-264 915.2 816 56.7
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 3.5e-264 915.2 815 57.7
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 7.8e-264 914.1 823 58.0
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 2.3e-263 912.5 814 56.6
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 1.1e-260 903.7 816 57.0
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 4.0e-260 901.7 815 55.8
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 6.8e-260 901.0 823 56.9
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 3.7e-258 895.2 833 56.1
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 3.7e-258 895.2 823 56.4
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 6.4e-258 894.4 825 56.1
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 8.3e-258 894.0 824 56.1
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 7.1e-257 891.0 824 56.2
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 3.5e-256 888.6 812 56.9
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 4.6e-256 888.3 822 56.7
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 4.6e-256 888.3 830 57.0
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 5.1e-255 884.8 822 56.0
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 5.1e-255 884.8 830 56.3
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 6.6e-255 884.4 822 56.0
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 1.9e-254 882.9 822 55.8
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 3.3e-254 882.1 847 54.9
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.1e-253 879.4 828 55.0
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 3.6e-253 878.6 820 56.0
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 4.7e-253 878.2 826 56.4
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.1e-252 877.1 818 54.5
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 6.4e-250 867.8 834 55.2
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 2.4e-249 865.9 817 54.1
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 7.1e-249 864.4 814 55.4
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 1.6e-248 863.2 815 54.7
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 5.6e-246 854.7 814 54.7
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 5.8e-243 844.7 822 55.2
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 1.2e-240 837.0 823 54.8
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 1.7e-234 816.6 753 57.1
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 3.2e-233 812.4 824 52.7
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 6.6e-231 804.7 813 52.0
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 1.1e-230 803.9 819 52.1
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 9.6e-230 800.8 831 53.9
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 1.1e-228 797.3 629 61.8
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.9e-222 776.5 585 65.8
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 4.8e-205 718.8 892 46.1
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 6.3e-205 718.4 816 47.1
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 1.9e-201 706.8 551 62.8
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 2.2e-186 656.8 823 43.7
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.2e-168 597.8 826 41.4
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 4.7e-168 595.9 827 41.1
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 2.6e-166 590.1 854 40.5
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 3.4e-166 589.7 464 63.8
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.3e-159 567.0 479 60.8
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 2.8e-152 543.5 829 39.8
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 7.5e-150 535.4 848 36.3
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 1.2e-144 518.1 853 37.9
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 5.6e-137 492.7 586 46.8
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 3.1e-135 486.9 812 37.9
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 1.5e-134 484.6 833 36.1
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 4.4e-134 483.0 680 41.0
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 3.2e-132 476.9 817 38.8
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 1.3e-122 444.9 845 35.3
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 2.6e-118 430.6 822 36.6
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.1e-113 415.2 341 61.3
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 9.7e-97 359.0 411 46.7
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 4.2e-92 343.6 673 31.5
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.1e-81 308.9 371 46.6
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 1.1e-68 265.8 749 29.9
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 2.7e-59 234.6 282 48.9
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 1.8e-58 231.9 281 49.1
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.8e-58 231.9 156 69.2
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 3.4e-57 227.6 281 48.4
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 1.3e-53 215.7 203 56.2
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.4e-50 205.7 165 64.2
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 2.6e-49 201.4 845 24.6
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 7.8e-46 189.9 201 50.7
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 2.0e-38 165.2 462 29.4
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 3.7e-32 144.4 129 55.0
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 1.4e-31 142.5 130 53.1
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 2.4e-31 141.7 133 50.4
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 2.5e-20 105.1 90 54.4
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.1e-19 102.1 98 51.0
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 4.2e-15 87.8 62 71.0
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 7.1e-15 87.0 61 67.2
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 7.8e-14 83.6 104 44.2
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 1.3e-13 82.8 104 44.2
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.2e-09 69.7 105 34.3
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 3.4e-09 68.2 80 43.8
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 3.4e-09 68.2 101 40.6
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 9.9e-09 66.6 53 58.5


User provided reference genes

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