Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 4.8e-241 837.4 423 100.0
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 1.7e-190 669.5 416 81.7
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 1.5e-186 656.4 416 79.6
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 4.1e-184 648.3 405 80.2
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 2.3e-182 642.5 403 79.2
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 5.1e-182 641.3 405 79.5
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 1.4e-176 623.2 406 76.8
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.3e-174 615.9 439 73.1
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 3.0e-174 615.5 421 72.4
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 6.6e-174 614.4 416 74.3
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 8.7e-174 614.0 408 75.5
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 8.7e-174 614.0 421 72.9
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.5e-173 613.2 416 74.0
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 5.6e-173 611.3 402 75.9
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.1e-172 609.4 421 72.0
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 1.8e-171 606.3 408 73.5
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 9.0e-171 604.0 421 71.5
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 1.2e-170 603.6 418 72.0
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 1.2e-170 603.6 421 71.7
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 2.0e-170 602.8 424 72.2
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 4.4e-170 601.7 402 74.4
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 5.8e-170 601.3 421 72.2
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 1.7e-169 599.7 416 73.3
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 2.2e-169 599.4 405 74.1
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 2.9e-169 599.0 390 76.9
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 3.8e-169 598.6 408 74.5
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 4.9e-169 598.2 405 72.1
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 1.4e-168 596.7 408 73.5
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 3.2e-168 595.5 398 75.1
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 7.1e-168 594.3 411 71.5
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 1.2e-167 593.6 417 72.4
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.1e-167 592.8 402 74.1
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 1.0e-166 590.5 403 73.7
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.7e-166 589.7 402 73.6
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 2.3e-166 589.3 405 73.1
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 1.1e-165 587.0 402 73.4
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 5.6e-165 584.7 381 77.2
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 2.1e-164 582.8 405 72.3
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 6.2e-164 581.3 408 71.3
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 2.4e-163 579.3 421 68.2
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 3.1e-163 578.9 402 71.4
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 3.1e-163 578.9 402 70.1
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 9.0e-163 577.4 408 68.9
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.0e-162 576.2 408 68.6
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 5.8e-162 574.7 408 68.4
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 9.9e-162 573.9 402 70.4
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 3.8e-161 572.0 402 70.1
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 4.9e-161 571.6 421 68.4
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 8.4e-161 570.9 421 68.4
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 1.4e-160 570.1 421 67.2
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 1.4e-160 570.1 404 70.0
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 1.4e-160 570.1 405 70.6
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.9e-160 569.7 408 71.1
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 1.9e-160 569.7 402 71.4
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 2.4e-160 569.3 421 68.4
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 3.2e-160 568.9 429 68.3
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 3.2e-160 568.9 398 71.9
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 4.2e-160 568.5 422 68.2
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 4.2e-160 568.5 390 73.6
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 5.4e-160 568.2 421 68.4
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 5.4e-160 568.2 404 71.5
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 7.1e-160 567.8 398 72.6
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 9.3e-160 567.4 421 67.9
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 9.3e-160 567.4 421 67.9
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 9.3e-160 567.4 402 71.1
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 9.3e-160 567.4 411 70.6
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 2.1e-159 566.2 414 69.6
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 2.7e-159 565.8 422 67.8
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 3.5e-159 565.5 408 70.3
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 4.6e-159 565.1 422 67.5
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 6.0e-159 564.7 421 67.7
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 7.9e-159 564.3 398 71.1
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 1.8e-158 563.1 422 67.3
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 2.3e-158 562.8 408 69.1
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 5.1e-158 561.6 407 70.5
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 1.9e-157 559.7 386 72.5
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.9e-157 559.7 422 68.2
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 9.6e-157 557.4 401 69.1
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 9.6e-157 557.4 401 69.1
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 9.6e-157 557.4 408 67.6
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 8.1e-156 554.3 405 68.9
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.1e-155 553.9 400 68.8
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 1.4e-155 553.5 430 66.3
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 1.8e-155 553.1 402 68.2
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.8e-155 553.1 413 69.2
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 9.0e-155 550.8 403 68.5
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 2.0e-154 549.7 413 66.6
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 4.5e-154 548.5 406 67.7
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 1.7e-153 546.6 419 64.4
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 2.2e-153 546.2 394 69.0
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 6.4e-153 544.7 387 71.3
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 6.4e-153 544.7 393 70.2
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 1.4e-152 543.5 393 69.7
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 7.1e-152 541.2 408 66.9
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 1.2e-151 540.4 402 66.2
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 1.0e-150 537.3 402 66.7
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 5.1e-150 535.0 405 64.9
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 6.7e-150 534.6 394 68.3
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.9e-149 533.1 398 68.1
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 3.7e-148 528.9 402 66.2
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 8.2e-148 527.7 390 67.9
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 1.3e-145 520.4 420 63.3
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 2.2e-145 519.6 359 72.1
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 6.5e-145 518.1 421 64.1
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 1.9e-144 516.5 402 63.9
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 1.9e-144 516.5 408 67.6
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 2.4e-139 499.6 357 69.5
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 2.6e-138 496.1 425 61.4
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 1.2e-135 487.3 396 62.9
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 1.5e-133 480.3 402 63.2
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 1.1e-131 474.2 389 63.5
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 1.4e-131 473.8 389 63.2
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 3.8e-129 465.7 402 60.4
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 1.9e-128 463.4 398 61.3
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 1.4e-126 457.2 414 55.8
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 7.4e-125 451.4 420 55.7
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.5e-117 427.2 420 51.2
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 4.4e-117 425.6 420 51.0
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.5e-109 400.6 408 50.5
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 5.5e-104 382.1 270 70.7
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 2.2e-100 370.2 279 64.9
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 2.0e-98 363.6 292 61.0
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.5e-96 357.5 408 46.1
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 4.0e-94 349.4 326 58.0
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 5.4e-91 339.0 395 43.3
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 7.0e-91 338.6 480 39.8
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 7.8e-90 335.1 271 63.8
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 7.3e-88 328.6 251 67.3
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.0e-86 324.7 209 74.6
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 2.6e-69 266.9 183 71.6
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.4e-62 244.6 165 78.2
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 4.2e-59 233.0 210 56.7
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 6.0e-58 229.2 375 38.4
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 2.3e-57 227.3 207 56.0
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 6.2e-55 219.2 158 68.4
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 5.8e-53 212.6 227 56.4
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 8.7e-41 172.2 202 48.5
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 1.5e-37 161.4 123 65.9
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 2.0e-37 161.0 92 88.0
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 2.3e-25 120.9 74 75.7
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 9.7e-24 115.5 106 49.1
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 2.8e-23 114.0 316 32.0
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 2.8e-23 114.0 316 32.0
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.8e-22 111.3 72 73.6
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 2.5e-19 100.9 86 59.3
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.3e-12 78.6 47 85.1
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 5.0e-12 76.6 51 70.6
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 2.5e-11 74.3 66 56.1


User provided reference genes

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