Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00098 Aquilegia oxysepala HOM05D000540 ORTHO05D009557 4.0e-66 254.6 127 100.0
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 6.9e-26 120.9 82 68.3
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 9.0e-26 120.6 118 50.8
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 1.2e-25 120.2 82 67.1
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 1.2e-25 120.2 82 67.1
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 1.2e-25 120.2 82 67.1
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 1.2e-25 120.2 82 67.1
Potri.005G154674 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.5e-25 119.8 82 67.1
Potri.013G137688 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.5e-25 119.8 82 68.3
PSO541G1563 Papaver somniferum HOM05D000540 ORTHO05D009557 3.4e-25 118.6 85 65.9
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 3.4e-25 118.6 82 67.1
Lalb_Chr25g0283401 Lupinus albus HOM05D000540 ORTHO05D009557 4.5e-25 118.2 82 64.6
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 5.8e-25 117.9 82 64.6
C03p38140 Brassica napus HOM05D000540 ORTHO05D009557 1.3e-24 116.7 82 65.9
BolSC35t60674H Brassica oleracea HOM05D000540 ORTHO05D009557 1.3e-24 116.7 82 65.9
BraSC59t46567Z Brassica rapa HOM05D000540 ORTHO05D009557 1.3e-24 116.7 82 65.9
Medtr3g035720 Medicago truncatula HOM05D000540 ORTHO05D009557 1.7e-24 116.3 79 65.8
Medtr4g051420 Medicago truncatula HOM05D000540 ORTHO05D009557 1.7e-24 116.3 79 65.8
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 2.2e-24 115.9 82 64.6
Potri.011G074301 Populus trichocarpa HOM05D000540 ORTHO05D009557 2.2e-24 115.9 82 67.1
arahy.Tifrunner.gnm1.ann1.YHR3P6 Arachis hypogaea HOM05D000540 ORTHO05D009557 2.9e-24 115.5 82 63.4
CARHR282280 Cardamine hirsuta HOM05D000540 ORTHO05D009557 2.9e-24 115.5 82 64.6
Peaxi162Scf00299g00117 Petunia axillaris HOM05D000540 ORTHO05D009557 4.9e-24 114.8 79 65.8
BolSC35t60725H Brassica oleracea HOM05D000540 ORTHO05D000681 6.5e-24 114.4 79 65.8
Lsat_1_v5_gn_5_50501 Lactuca sativa HOM05D000540 ORTHO05D009557 1.9e-23 112.8 82 62.2
BolC9t56905H Brassica oleracea HOM05D000540 ORTHO05D009557 4.2e-23 111.7 82 64.6
C09p40100 Brassica napus HOM05D000540 ORTHO05D000681 5.5e-23 111.3 79 64.6
CARHR114570 Cardamine hirsuta HOM05D000540 ORTHO05D009557 7.9e-22 107.5 79 62.0
Gohir.A02G076002 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.8e-21 106.3 79 62.0
Hund31045 Selenicereus undatus HOM05D000540 ORTHO05D000681 3.9e-21 105.1 73 67.1
MBI12_g23294_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 5.1e-21 104.8 77 66.2
Gohir.A12G089750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.1e-20 103.6 70 68.6
PSO675G4368 Papaver somniferum HOM05D000540 ORTHO05D009557 1.9e-20 102.8 70 70.0
Lsat_1_v5_gn_3_22600 Lactuca sativa HOM05D000540 ORTHO05D000681 2.5e-20 102.4 65 67.7
Gorai.004G123300 Gossypium raimondii HOM05D000540 ORTHO05D009557 3.3e-20 102.1 74 60.8
CDE07G1014 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 5.7e-20 101.3 85 60.0
CDE04G1374 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 7.4e-20 100.9 85 60.0
Medtr0002s0360 Medicago truncatula HOM05D000540 ORTHO05D000681 9.7e-20 100.5 82 58.5
Medtr0002s0800 Medicago truncatula HOM05D000540 ORTHO05D000681 9.7e-20 100.5 82 58.5
SMO086G0012 Selaginella moellendorffii HOM05D000540 ORTHO05D009557 1.6e-19 99.8 82 56.1
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 2.2e-19 99.4 70 67.1
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 2.2e-19 99.4 70 67.1
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 2.2e-19 99.4 70 67.1
Gohir.D06G105033 Gossypium hirsutum HOM05D000540 ORTHO05D009557 2.8e-19 99.0 70 65.7
Potri.019G013302 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.8e-18 96.3 62 69.4
SGA_v2.0_scaffold126G33916 Striga asiatica HOM05D000218 ORTHO05D000125 1.8e-18 96.3 85 54.1
Gohir.D04G028750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 5.3e-18 94.7 77 61.0
MSTRG.19148 Avicennia marina HOM05D000218 ORTHO05D000125 1.5e-17 93.2 87 52.9
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 1.5e-17 93.2 66 66.7
Oeu025653.1 Olea europaea HOM05D000218 ORTHO05D000125 1.5e-17 93.2 76 56.6
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 3.4e-17 92.0 87 56.3
Oeu011524.2 Olea europaea HOM05D000218 ORTHO05D000125 3.4e-17 92.0 86 53.5
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 4.5e-17 91.7 87 57.5
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 4.5e-17 91.7 85 55.3
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 5.0e-16 88.2 87 52.9
PSO349G0315 Papaver somniferum HOM05D000540 ORTHO05D009557 5.0e-16 88.2 69 60.9
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 6.5e-16 87.8 71 57.7
Oeu001341.1 Olea europaea HOM05D000218 ORTHO05D000125 6.5e-16 87.8 86 52.3
unitig_699.g19584 Utricularia gibba HOM05D000218 ORTHO05D000125 1.4e-15 86.7 86 51.2
PSO675G7318 Papaver somniferum HOM05D000540 ORTHO05D009557 1.9e-15 86.3 69 60.9
Prupe.4G266600 Prunus persica HOM05D000540 ORTHO05D009557 5.5e-15 84.7 72 58.3
FvH4_6g09000 Fragaria vesca HOM05D000445 ORTHO05D000314 9.4e-15 84.0 56 64.3
Hund04059 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund19321 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund26846 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund27592 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund27964 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund28044 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund28461 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund28465 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund28634 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund29039 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund29219 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund29502 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund29527 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund29546 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund29570 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund29607 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund29614 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund29663 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund29959 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund30110 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund30114 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund30274 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Hund30581 Selenicereus undatus HOM05D000540 ORTHO05D009557 7.9e-14 80.9 53 71.7
Migut.J00430 Erythranthe guttata HOM05D000540 ORTHO05D009557 1.0e-13 80.5 70 58.6
Nitab4.5_0001783g0160 Nicotiana tabacum HOM05D000540 ORTHO05D009557 3.0e-13 79.0 50 70.0
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 1.1e-12 77.0 70 48.6
Lj2P692T49 Lonicera japonica HOM05D000540 ORTHO05D009557 1.5e-12 76.6 57 57.9
Nn021s41517 Nelumbo nucifera HOM05D000540 ORTHO05D009557 1.9e-12 76.3 49 65.3
Nn070s42375 Nelumbo nucifera HOM05D000540 ORTHO05D009557 1.9e-12 76.3 49 65.3
Gohir.D05G303851 Gossypium hirsutum HOM05D000540 ORTHO05D009557 3.3e-12 75.5 49 67.3
RcHm_v2.0_CPg0501831 Rosa chinensis HOM05D000540 ORTHO05D009557 3.3e-12 75.5 49 65.3
Gorai.005G167500 Gossypium raimondii HOM05D000540 ORTHO05D009557 4.3e-12 75.1 50 66.0
arahy.Tifrunner.gnm1.ann1.CR1XRQ Arachis hypogaea HOM05D003165 ORTHO05D009557 5.7e-12 74.7 55 56.4
MBI12_g18826_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 5.7e-12 74.7 46 71.7
BolSC29t60614H Brassica oleracea HOM05D000540 ORTHO05D009557 9.7e-12 73.9 49 71.4
RcHm_v2.0_Chr1g0329571 Rosa chinensis HOM05D000540 ORTHO05D009557 1.3e-11 73.6 49 63.3
Glyma.18G078500 Glycine max HOM05D000540 ORTHO05D009557 1.7e-11 73.2 49 61.2
BolC7t41706H Brassica oleracea HOM05D000540 ORTHO05D009557 2.8e-11 72.4 49 63.3
Nn4g25228 Nelumbo nucifera HOM05D000540 ORTHO05D009557 4.8e-11 71.6 46 65.2
Oeu028768.1 Olea europaea HOM05D000540 ORTHO05D009557 4.8e-11 71.6 49 61.2
AL1G45050 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 8.2e-11 70.9 49 61.2
AL2G20510 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 8.2e-11 70.9 49 61.2
BNapus_Darmor_BZH_scaffold_253p00380 Brassica napus HOM05D000540 ORTHO05D009557 8.2e-11 70.9 49 61.2
BolSC56t61244H Brassica oleracea HOM05D000540 ORTHO05D009557 8.2e-11 70.9 49 61.2
BraSC103t45442Z Brassica rapa HOM05D000540 ORTHO05D009557 8.2e-11 70.9 49 61.2
RcHm_v2.0_Chr2g0118531 Rosa chinensis HOM05D000540 ORTHO05D009557 2.6e-09 65.9 49 57.1
Lalb_Chr13g0292571 Lupinus albus HOM05D000540 ORTHO05D009557 1.0e-08 63.9 43 67.4
Sc25g0002530 Simmondsia chinensis HOM05D000540 ORTHO05D000681 6.5e-08 61.2 70 45.7
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 6.5e-08 61.2 88 40.9
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 6.5e-08 61.2 88 40.9
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 6.5e-08 61.2 88 40.9
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 1.1e-07 60.5 90 40.0
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 1.1e-07 60.5 90 40.0
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 4.2e-07 58.5 67 43.3
Cre08.g375250 Chlamydomonas reinhardtii HOM05D000540 ORTHO05D009557 5.5e-07 58.2 66 47.0
Nitab4.5_0004376g0170 Nicotiana tabacum HOM05D002578 ORTHO05D009557 5.5e-07 58.2 36 69.4
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 9.4e-07 57.4 53 52.8
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 9.4e-07 57.4 125 36.8
SalBow4G2535 Salvia bowleyana HOM05D042125 ORTHO05D037497 9.4e-07 57.4 54 51.9
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 2.1e-06 56.2 59 47.5
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 2.1e-06 56.2 146 32.9
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 2.7e-06 55.8 72 47.2
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 2.7e-06 55.8 76 42.1
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 2.7e-06 55.8 76 42.1
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 2.7e-06 55.8 76 42.1
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 4.7e-06 55.1 62 48.4
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 4.7e-06 55.1 55 47.3
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 4.7e-06 55.1 55 47.3
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 6.1e-06 54.7 53 50.9
SalBow3G1131 Salvia bowleyana HOM05D042125 ORTHO05D037497 6.1e-06 54.7 53 50.9
SalBow3G3871 Salvia bowleyana HOM05D042125 ORTHO05D037497 6.1e-06 54.7 53 50.9
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 7.9e-06 54.3 80 38.8


User provided reference genes

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