Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 2.2e-233 812.0 422 100.0
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.2e-215 753.1 421 91.2
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 1.1e-213 746.5 422 89.6
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 5.5e-213 744.2 419 89.5
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.2e-212 743.0 421 90.0
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 1.6e-212 742.7 418 89.5
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 1.6e-212 742.7 422 89.6
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 2.7e-212 741.9 422 88.6
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 3.6e-212 741.5 422 88.9
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 1.4e-211 739.6 422 89.1
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 1.4e-211 739.6 422 88.9
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.8e-211 739.2 419 89.5
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 1.8e-211 739.2 421 88.4
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 3.0e-211 738.4 422 89.6
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 4.0e-211 738.0 422 89.8
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 5.2e-211 737.6 422 88.9
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 6.8e-211 737.3 419 89.5
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 1.5e-210 736.1 419 89.3
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 1.5e-210 736.1 420 88.8
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 2.0e-210 735.7 422 89.6
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 2.6e-210 735.3 422 88.4
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 2.6e-210 735.3 420 89.0
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 3.4e-210 734.9 422 88.6
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 4.4e-210 734.6 422 89.1
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.4e-210 734.6 422 88.4
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 5.7e-210 734.2 420 89.0
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 5.7e-210 734.2 420 89.0
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 7.5e-210 733.8 430 87.9
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 9.8e-210 733.4 418 89.5
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 1.3e-209 733.0 420 89.0
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 1.3e-209 733.0 419 88.8
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.3e-209 733.0 422 88.6
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.3e-209 733.0 422 88.2
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 1.7e-209 732.6 422 88.6
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 2.2e-209 732.3 419 88.5
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.2e-209 732.3 422 87.9
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 2.8e-209 731.9 419 88.8
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 4.8e-209 731.1 422 88.4
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.8e-209 731.1 431 87.5
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 6.3e-209 730.7 422 88.4
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 8.3e-209 730.3 422 88.6
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.4e-208 729.6 422 88.6
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 2.4e-208 728.8 422 87.7
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 4.1e-208 728.0 422 87.4
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 4.1e-208 728.0 422 87.7
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 5.4e-208 727.6 420 87.6
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 7.0e-208 727.2 421 88.8
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 7.0e-208 727.2 422 87.2
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 9.1e-208 726.9 422 87.0
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 1.2e-207 726.5 422 87.9
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.2e-207 726.5 420 87.9
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 1.2e-207 726.5 419 88.3
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 2.0e-207 725.7 422 87.7
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 2.0e-207 725.7 422 87.7
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 2.0e-207 725.7 422 87.9
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 2.0e-207 725.7 418 87.3
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 2.7e-207 725.3 422 87.7
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 2.7e-207 725.3 422 87.7
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 3.5e-207 724.9 422 87.7
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 3.5e-207 724.9 422 87.0
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 3.5e-207 724.9 421 88.4
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 3.5e-207 724.9 422 87.7
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 4.5e-207 724.5 419 87.1
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 4.5e-207 724.5 422 88.4
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 5.9e-207 724.2 418 87.3
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 5.9e-207 724.2 437 85.8
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.0e-206 723.4 418 87.3
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 1.3e-206 723.0 418 87.6
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.3e-206 723.0 470 81.1
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.3e-206 723.0 470 81.1
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 1.3e-206 723.0 422 87.4
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 2.3e-206 722.2 422 87.0
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 2.3e-206 722.2 422 87.2
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 2.3e-206 722.2 419 86.4
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 2.9e-206 721.8 419 86.6
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 3.8e-206 721.5 422 87.2
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 5.0e-206 721.1 418 88.0
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 8.6e-206 720.3 422 86.5
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.1e-205 719.9 422 86.7
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 1.1e-205 719.9 419 88.1
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.1e-205 719.9 418 86.8
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.1e-205 719.9 422 86.3
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 1.5e-205 719.5 422 87.0
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 1.5e-205 719.5 419 86.2
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 1.9e-205 719.2 422 86.5
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 3.2e-205 718.4 422 86.7
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 3.2e-205 718.4 422 86.7
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 7.2e-205 717.2 424 87.0
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 9.5e-205 716.8 422 86.3
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.2e-204 716.5 422 86.7
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 1.2e-204 716.5 418 86.8
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 1.2e-204 716.5 418 86.4
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.6e-204 716.1 422 85.8
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 2.8e-204 715.3 422 85.3
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 3.6e-204 714.9 418 87.1
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 3.6e-204 714.9 422 85.3
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 4.7e-204 714.5 439 84.7
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 1.4e-203 713.0 418 86.6
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 1.4e-203 713.0 422 86.7
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.8e-203 712.6 422 85.5
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 1.8e-203 712.6 418 85.9
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 4.0e-203 711.4 422 85.3
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 4.0e-203 711.4 418 87.1
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 4.0e-203 711.4 419 86.2
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 4.0e-203 711.4 418 86.1
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 5.2e-203 711.1 453 82.1
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 6.8e-203 710.7 422 85.1
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.2e-202 709.9 422 85.1
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.5e-202 709.5 418 86.4
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 2.0e-202 709.1 418 86.1
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 9.8e-202 706.8 451 82.7
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 9.8e-202 706.8 422 84.8
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 4.9e-201 704.5 418 84.2
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.8e-200 702.6 437 82.6
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 5.4e-200 701.0 422 86.7
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.0e-198 696.8 431 83.5
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 6.8e-195 684.1 412 85.9
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 1.2e-194 683.3 428 81.5
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 1.4e-192 676.4 388 88.9
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 3.2e-192 675.2 420 84.0
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 5.4e-192 674.5 422 82.7
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.7e-191 672.2 389 88.4
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 9.5e-189 663.7 374 88.8
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 5.2e-187 657.9 472 75.2
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 2.6e-186 655.6 377 86.5
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 3.4e-186 655.2 501 70.1
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.4e-186 655.2 416 82.9
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 2.9e-185 652.1 372 87.9
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 7.8e-183 644.0 363 89.3
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 5.6e-181 637.9 397 80.1
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 1.1e-179 633.6 405 79.3
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 4.7e-172 608.2 415 73.5
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 3.1e-171 605.5 422 76.1
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 9.2e-168 594.0 410 77.1
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 1.3e-166 590.1 397 73.0
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 4.3e-165 585.1 331 88.2
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 3.0e-158 562.4 310 92.6
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.4e-147 526.9 396 66.9
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 4.0e-147 525.4 420 64.8
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 2.4e-144 516.2 396 66.9
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 9.0e-139 497.7 459 63.0
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 3.8e-137 492.3 280 91.4
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 9.3e-136 487.6 284 85.2
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.4e-131 473.8 391 68.5
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 4.2e-128 462.2 260 90.0
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.8e-118 427.9 243 90.9
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 9.4e-112 407.9 236 83.5
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 9.1e-107 391.3 223 86.5
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.1e-99 367.9 244 76.6
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 2.2e-97 360.1 205 88.8
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 4.4e-85 319.3 287 62.0
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 1.3e-73 281.2 296 51.7
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 9.5e-72 275.0 207 69.1
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 2.3e-65 253.8 147 84.4
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 4.9e-60 236.1 189 62.4
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 3.5e-50 203.4 198 63.6
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 4.6e-50 203.0 133 72.9
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 4.7e-47 193.0 114 93.0
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 9.0e-46 188.7 149 73.2
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 4.2e-43 179.9 119 72.3
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 4.0e-38 163.3 106 77.4
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 1.5e-37 161.4 290 36.6
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 5.8e-37 159.5 157 61.8
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 7.6e-37 159.1 157 61.1
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 8.4e-28 129.0 178 38.8
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.5e-27 127.5 80 75.0
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 2.5e-24 117.5 129 54.3
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 6.2e-23 112.8 69 79.7
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 2.2e-15 87.8 97 53.6
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 8.2e-15 85.9 50 94.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 2.0e-13 81.3 53 83.0
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 1.1e-11 75.5 40 97.5
Haze_26311 Corylus avellana HOM05D002944 ORTHO05D003377 1.9e-11 74.7 329 28.3
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 7.9e-10 69.3 37 86.5
Solyc05g005160.3 Solanum lycopersicum HOM05D002061 ORTHO05D002849 3.0e-09 67.4 414 24.9
Sopen05g001170 Solanum pennellii HOM05D002061 ORTHO05D002849 8.8e-09 65.9 414 24.6
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 4.3e-08 63.5 62 48.4
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 5.7e-08 63.2 112 33.9
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 1.3e-07 62.0 110 33.6
PGSC0003DMG400013485 Solanum tuberosum HOM05D002061 ORTHO05D002849 1.3e-07 62.0 414 24.4
Cre05.g241850 Chlamydomonas reinhardtii HOM05D002061 ORTHO05D002849 1.4e-06 58.5 399 24.6
HanXRQChr15g0475161 Helianthus annuus HOM05D004007 ORTHO05D222506 5.3e-06 56.6 31 83.9
SEGI_05260 Sequoiadendron giganteum HOM05D002061 ORTHO05D002849 5.3e-06 56.6 405 23.2


User provided reference genes

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