Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 7.5e-297 1023.1 514 100.0
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.2e-216 755.7 514 73.7
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.2e-215 751.5 516 74.8
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 5.5e-207 724.5 486 74.1
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 7.2e-207 724.2 486 74.3
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 7.2e-207 724.2 499 72.1
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 3.6e-206 721.8 514 70.6
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 6.1e-206 721.1 481 74.0
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 6.1e-206 721.1 509 71.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 8.0e-206 720.7 478 75.3
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.8e-205 719.5 500 70.4
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 3.0e-205 718.8 490 73.5
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 2.0e-204 716.1 496 72.4
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.4e-204 715.3 509 70.7
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 9.7e-204 713.8 501 70.3
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 8.3e-203 710.7 513 70.0
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.1e-202 710.3 517 71.6
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.4e-202 709.9 514 71.6
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.4e-202 709.9 503 70.8
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 7.0e-202 707.6 526 67.5
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 7.7e-201 704.1 503 68.8
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.7e-200 703.0 500 70.2
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.9e-200 702.2 479 72.7
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.9e-200 702.2 520 68.3
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 5.0e-200 701.4 497 70.2
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 6.5e-200 701.0 517 71.4
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 3.2e-199 698.7 498 69.5
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 7.2e-199 697.6 517 67.9
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.2e-198 696.8 486 69.1
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.7e-198 694.9 517 68.7
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 3.0e-197 692.2 514 68.7
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.2e-196 690.3 501 69.5
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.2e-196 690.3 524 66.4
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 3.4e-196 688.7 503 67.0
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 5.7e-196 688.0 486 68.7
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 9.8e-196 687.2 486 70.4
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-195 686.8 486 68.5
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.3e-195 686.8 486 68.5
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.2e-195 686.0 481 69.9
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.8e-194 682.9 486 68.1
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.8e-194 682.9 486 68.1
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 2.4e-194 682.6 505 67.5
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.4e-194 682.6 528 66.1
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 5.4e-194 681.4 567 62.4
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 5.4e-194 681.4 479 70.4
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 9.1e-194 680.6 501 67.7
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 7.7e-193 677.6 502 66.5
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.3e-192 676.8 486 67.5
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.3e-192 676.8 515 66.4
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.3e-192 676.8 514 67.1
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 2.3e-192 676.0 517 67.1
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 3.8e-192 675.2 481 69.4
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 6.6e-192 674.5 486 69.1
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 8.6e-192 674.1 497 69.0
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.5e-191 673.3 496 68.5
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 4.2e-191 671.8 486 67.3
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.5e-191 671.4 509 67.8
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 3.6e-190 668.7 486 66.9
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 8.0e-190 667.5 493 69.2
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.0e-189 667.2 501 65.9
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.0e-189 667.2 479 69.5
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.4e-189 666.8 535 64.7
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 2.3e-189 666.0 499 65.7
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 5.2e-189 664.8 493 69.0
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 8.9e-189 664.1 518 66.4
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 3.4e-188 662.1 476 66.8
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 5.7e-188 661.4 528 64.8
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 7.5e-188 661.0 513 66.3
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.7e-187 659.8 476 68.7
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.2e-187 659.4 501 67.7
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 2.8e-187 659.1 479 68.9
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 3.7e-187 658.7 479 66.8
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.7e-187 658.7 499 67.1
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.8e-186 656.4 538 62.6
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 2.4e-186 656.0 506 65.6
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.2e-185 653.7 479 67.6
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 3.5e-185 652.1 510 64.1
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 5.9e-185 651.4 476 68.3
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 7.8e-185 651.0 529 64.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.7e-184 649.8 491 67.8
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.3e-184 649.4 487 66.3
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.3e-184 649.4 495 65.1
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.9e-184 648.7 478 68.6
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.1e-183 647.1 471 67.5
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.9e-183 646.4 500 66.2
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.3e-183 645.6 479 67.6
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.3e-183 645.2 515 64.1
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.3e-183 645.2 515 64.1
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 7.3e-183 644.4 471 69.9
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 2.1e-182 642.9 486 64.8
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 4.7e-182 641.7 486 64.8
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 8.0e-182 641.0 479 66.0
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.0e-181 640.6 509 65.6
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-181 640.2 515 63.7
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.8e-181 639.8 486 64.8
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 5.2e-181 638.3 514 63.8
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.2e-180 637.1 476 67.9
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.6e-180 636.0 474 66.0
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 7.5e-180 634.4 479 67.4
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 9.8e-180 634.0 498 64.9
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.7e-179 633.3 479 64.9
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 6.4e-179 631.3 479 65.6
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 6.4e-179 631.3 548 62.0
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 3.2e-178 629.0 517 62.7
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 5.4e-178 628.2 479 64.7
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.0e-177 626.3 497 63.2
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 2.7e-177 625.9 474 66.2
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.2e-174 614.8 515 61.9
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.1e-173 614.0 653 53.3
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.1e-173 614.0 480 66.0
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 7.1e-170 601.3 477 62.5
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 7.8e-169 597.8 479 63.3
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.3e-168 597.0 534 59.6
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 7.8e-161 571.2 498 61.0
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 2.8e-158 562.8 512 60.4
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.4e-157 560.5 378 74.3
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 4.4e-156 555.4 402 67.7
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 5.1e-152 542.0 375 72.0
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 4.4e-148 528.9 501 54.1
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.3e-144 516.5 510 57.6
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 5.6e-143 511.9 512 52.7
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 4.8e-142 508.8 483 53.0
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.1e-135 487.6 392 64.8
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 7.4e-135 485.0 501 51.9
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 2.8e-134 483.0 374 65.5
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-128 464.2 522 49.2
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 8.7e-128 461.5 360 66.7
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.9e-127 460.3 373 64.1
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 2.4e-125 453.4 334 67.7
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.2e-122 442.6 301 73.8
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 2.9e-107 393.3 324 63.9
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.2e-105 387.9 494 45.3
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.0e-99 368.2 286 64.0
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.6e-97 360.9 241 71.8
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.0e-96 358.2 489 42.3
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 6.3e-94 349.0 235 72.8
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 4.1e-93 346.3 247 70.4
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 3.2e-90 336.7 215 76.7
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 1.2e-89 334.7 217 74.7
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 8.0e-89 332.0 227 69.6
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 5.2e-88 329.3 219 75.8
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.3e-86 322.4 262 63.4
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 5.5e-82 309.3 300 54.0
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 2.8e-78 297.0 468 39.3
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 2.4e-77 293.9 286 51.7
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 3.5e-76 290.0 207 67.6
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.4e-71 273.5 202 70.3
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.4e-69 268.1 482 33.8
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 4.6e-68 263.1 178 74.2
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.6e-60 236.5 520 34.0
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.1e-58 231.9 144 79.9
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.9e-58 231.1 276 48.6
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.9e-54 217.2 194 57.7
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.4e-53 214.2 188 62.2
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.8e-49 200.7 291 43.6
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.0e-48 196.8 125 72.8
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.9e-43 180.3 114 73.7
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 3.3e-42 177.2 124 66.1
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 7.6e-39 166.0 149 55.7
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.2e-31 142.1 359 31.8
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 9.9e-31 139.0 153 49.0
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 1.1e-29 135.6 365 31.0
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.9e-29 134.8 94 69.1
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.2e-29 134.0 77 83.1
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 1.0e-27 129.0 93 65.6
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.3e-27 128.6 167 47.3
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 3.9e-27 127.1 88 68.2
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 9.6e-26 122.5 103 65.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.3e-25 122.1 88 67.0
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 8.1e-25 119.4 76 77.6
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 2.4e-21 107.8 90 61.1
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.1e-20 104.8 61 75.4
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 4.3e-18 97.1 62 77.4
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 7.4e-18 96.3 96 52.1
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 2.1e-17 94.7 81 63.0
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 5.3e-16 90.1 65 63.1
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 7.6e-15 86.3 87 49.4
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 2.9e-14 84.3 76 51.3
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 2.9e-14 84.3 72 48.6
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.5e-13 80.1 162 34.6
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.2e-12 79.0 57 64.9
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 6.3e-09 66.6 50 58.0
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 8.2e-09 66.2 48 68.8
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.0e-07 61.6 109 36.7
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 7.6e-07 59.7 151 32.5
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 8.5e-06 56.2 67 50.7


User provided reference genes

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