Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 7.3e-222 773.5 364 100.0
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.3e-170 603.2 362 74.6
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 2.0e-166 589.3 364 73.1
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 1.4e-164 583.2 361 71.7
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.2e-163 580.1 364 72.3
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.6e-163 579.7 364 71.7
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 3.5e-163 578.6 364 71.4
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.5e-163 578.2 364 71.4
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 7.7e-163 577.4 363 72.2
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 5.0e-162 574.7 363 70.8
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.1e-161 573.5 362 72.4
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 7.2e-161 570.9 364 70.6
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 2.7e-160 568.9 363 71.1
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 8.8e-159 563.9 365 70.7
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 2.6e-158 562.4 358 71.2
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 5.7e-158 561.2 358 70.9
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 7.5e-158 560.8 350 70.3
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 3.7e-157 558.5 359 69.6
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.4e-156 556.6 363 68.6
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.8e-156 556.2 343 71.1
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.4e-156 554.7 361 70.1
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.4e-156 554.7 361 70.1
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 9.1e-156 553.9 361 70.4
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.6e-155 553.1 361 68.7
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 1.0e-154 550.4 354 68.6
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.0e-154 550.4 359 70.2
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 2.9e-154 548.9 361 68.7
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.2e-152 543.5 363 68.9
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 3.6e-152 542.0 362 67.1
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 4.7e-152 541.6 357 67.8
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 2.3e-151 539.3 361 68.4
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 3.0e-151 538.9 363 65.3
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.0e-151 538.5 359 65.5
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 6.8e-151 537.7 346 68.8
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 6.8e-151 537.7 357 67.5
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 6.8e-151 537.7 355 68.2
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 6.8e-151 537.7 359 66.3
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.2e-150 537.0 360 64.7
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.7e-150 534.6 361 66.8
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 5.7e-150 534.6 361 66.5
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 7.5e-150 534.3 356 68.0
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 7.5e-150 534.3 359 66.0
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 9.8e-150 533.9 363 67.2
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 9.8e-150 533.9 355 67.6
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 9.8e-150 533.9 364 65.9
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.8e-149 532.3 355 67.3
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 4.9e-149 531.6 363 66.1
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 4.9e-149 531.6 357 66.9
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 1.4e-148 530.0 370 65.7
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.4e-148 529.3 341 69.8
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 2.4e-148 529.3 342 69.3
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 3.1e-148 528.9 364 66.2
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 4.1e-148 528.5 361 65.1
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 4.1e-148 528.5 355 65.9
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 7.0e-148 527.7 357 66.4
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 1.2e-147 526.9 366 64.5
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.0e-147 526.2 311 74.0
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 2.7e-147 525.8 364 65.4
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 5.9e-147 524.6 364 65.4
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.0e-146 523.9 362 66.6
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 1.0e-146 523.9 362 66.3
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.3e-146 523.5 364 64.8
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 6.6e-146 521.2 362 65.2
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 6.6e-146 521.2 359 65.7
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 8.6e-146 520.8 362 65.5
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.1e-145 520.4 367 64.0
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 7.3e-145 517.7 358 66.2
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 1.2e-144 516.9 361 65.7
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 1.6e-144 516.5 359 64.6
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 2.8e-144 515.8 363 65.6
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 4.7e-144 515.0 355 65.4
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 6.1e-144 514.6 367 63.8
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 1.0e-143 513.8 366 64.2
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.4e-143 513.5 364 64.0
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 1.8e-143 513.1 371 63.3
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 2.3e-143 512.7 363 64.5
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 3.1e-143 512.3 363 64.7
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 4.0e-143 511.9 319 71.5
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 6.8e-143 511.1 363 64.5
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 6.8e-143 511.1 319 71.5
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 8.9e-143 510.8 319 71.5
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 1.2e-142 510.4 455 54.1
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 1.5e-142 510.0 365 64.4
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 2.0e-142 509.6 360 64.4
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 2.0e-142 509.6 361 64.8
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 2.0e-142 509.6 322 72.0
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 2.0e-142 509.6 318 71.4
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.6e-142 509.2 360 64.4
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.6e-142 509.2 360 64.4
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 3.7e-141 505.4 360 64.2
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 4.1e-140 501.9 451 53.9
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 5.4e-140 501.5 363 63.6
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 9.2e-140 500.7 405 58.0
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 3.5e-139 498.8 356 66.6
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 7.8e-139 497.7 345 64.1
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 7.3e-137 491.1 353 65.2
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 9.5e-137 490.7 365 61.4
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 1.2e-136 490.3 357 61.3
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 8.9e-135 484.2 364 63.7
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 8.9e-135 484.2 364 63.7
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 4.4e-134 481.9 354 61.9
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 5.8e-134 481.5 354 61.0
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 5.8e-134 481.5 329 65.3
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 2.8e-128 462.6 364 58.8
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 3.6e-128 462.2 314 68.2
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.7e-125 453.4 362 59.4
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 3.5e-123 445.7 365 57.8
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 6.0e-123 444.9 351 60.7
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 6.0e-123 444.9 275 72.7
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.0e-122 444.1 369 60.2
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 1.3e-122 443.7 275 72.4
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-121 440.7 275 72.0
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 2.2e-117 426.4 250 74.0
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.6e-112 409.1 347 55.9
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 9.9e-110 401.0 268 66.4
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 9.3e-108 394.4 316 62.0
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.2e-107 394.0 286 62.2
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 3.4e-102 375.9 230 71.3
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.0e-98 362.8 229 69.9
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 5.1e-98 362.1 324 51.5
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 4.3e-97 359.0 336 50.6
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.1e-96 354.8 251 64.5
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 6.2e-88 328.6 271 57.9
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 8.2e-88 328.2 205 68.3
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 6.9e-87 325.1 341 48.7
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.8e-85 319.3 325 47.4
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 1.4e-84 317.4 236 61.4
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.4e-84 317.4 359 43.7
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 3.2e-84 316.2 221 62.9
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 3.2e-84 316.2 361 44.3
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 5.3e-79 298.9 194 71.1
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 7.7e-78 295.0 273 51.3
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 3.8e-77 292.7 184 72.3
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.1e-74 282.3 202 61.4
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 5.3e-71 272.3 210 61.9
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 5.9e-62 242.3 243 51.0
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.8e-61 239.6 155 72.9
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 3.7e-56 223.0 160 63.8
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 1.5e-49 201.1 144 63.9
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 6.3e-40 169.1 228 40.4
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.2e-32 144.1 99 66.7
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.1e-27 127.5 109 53.2
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.4e-26 124.8 104 51.0
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 1.3e-24 118.2 98 53.1
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.0e-22 110.9 95 49.5
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 2.7e-14 84.0 130 33.1
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 1.1e-07 62.0 102 37.3


User provided reference genes

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