Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.5e-51 206.1 114 100.0
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 4.6e-29 131.3 103 71.8
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.0e-28 130.2 104 74.0
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 2.5e-27 125.6 106 70.8
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 4.3e-27 124.8 104 70.2
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.7e-26 121.3 112 67.0
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 3.1e-25 118.6 118 66.1
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 3.1e-25 118.6 110 65.5
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 5.2e-25 117.9 104 70.2
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 1.2e-24 116.7 107 65.4
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 2.0e-24 115.9 104 64.4
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 2.0e-24 115.9 120 65.0
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 2.6e-24 115.5 112 65.2
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.4e-24 115.2 110 65.5
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 5.8e-24 114.4 105 66.7
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 9.9e-24 113.6 107 66.4
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 2.2e-23 112.5 104 66.3
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.2e-23 112.5 122 59.8
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 2.2e-23 112.5 107 63.6
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 2.2e-23 112.5 107 63.6
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.9e-23 112.1 123 61.8
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 2.9e-23 112.1 115 61.7
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 2.9e-23 112.1 122 59.8
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 3.8e-23 111.7 110 61.8
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 3.8e-23 111.7 122 59.8
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.8e-23 111.7 122 59.8
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 3.8e-23 111.7 110 62.7
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 3.8e-23 111.7 108 63.9
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 4.9e-23 111.3 123 61.0
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.1e-22 110.2 109 63.3
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.4e-22 109.0 122 59.0
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.4e-22 109.0 110 64.5
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 3.2e-22 108.6 114 64.0
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 4.2e-22 108.2 120 60.0
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 5.4e-22 107.8 122 58.2
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 7.1e-22 107.5 120 60.0
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 9.3e-22 107.1 97 71.1
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 9.3e-22 107.1 103 63.1
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 9.3e-22 107.1 104 64.4
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 9.3e-22 107.1 110 60.9
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 1.2e-21 106.7 106 62.3
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 1.6e-21 106.3 106 63.2
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 2.1e-21 105.9 118 59.3
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.7e-21 105.5 116 59.5
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 4.6e-21 104.8 107 63.6
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 6.0e-21 104.4 121 58.7
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.0e-21 104.4 114 59.6
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 7.8e-21 104.0 105 61.9
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.0e-20 103.6 123 57.7
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 2.3e-20 102.4 110 60.0
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 2.3e-20 102.4 112 59.8
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 6.6e-20 100.9 118 56.8
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 6.6e-20 100.9 113 58.4
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.1e-19 100.1 118 56.8
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 1.9e-19 99.4 103 58.3
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 3.3e-19 98.6 111 58.6
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.3e-19 98.6 114 58.8
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 4.3e-19 98.2 111 58.6
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.3e-19 97.4 114 57.9
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 9.6e-19 97.1 114 58.8
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 1.3e-18 96.7 111 59.5
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.6e-18 96.3 106 57.5
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 2.1e-18 95.9 114 58.8
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 2.1e-18 95.9 108 57.4
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 2.1e-18 95.9 114 57.0
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 2.8e-18 95.5 111 56.8
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 2.8e-18 95.5 118 53.4
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 6.2e-18 94.4 130 51.5
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 6.2e-18 94.4 109 59.6
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.1e-17 93.6 122 53.3
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.4e-17 93.2 114 52.6
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.8e-17 92.8 104 58.7
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 2.4e-17 92.4 114 56.1
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 3.1e-17 92.0 123 54.5
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 3.1e-17 92.0 123 54.5
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 4.0e-17 91.7 117 57.3
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 5.3e-17 91.3 114 56.1
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 1.2e-16 90.1 112 57.1
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 2.0e-16 89.4 115 56.5
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 2.0e-16 89.4 110 56.4
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 3.4e-16 88.6 108 56.5
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 7.6e-16 87.4 110 51.8
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 1.3e-15 86.7 110 51.8
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 1.7e-15 86.3 150 48.7
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 6.4e-15 84.3 112 50.0
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 8.4e-15 84.0 115 53.9
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 1.1e-14 83.6 104 54.8
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 1.9e-14 82.8 102 51.0
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 2.4e-14 82.4 104 53.8
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 3.2e-14 82.0 104 52.9
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 7.1e-14 80.9 107 54.2
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 9.3e-14 80.5 103 52.4
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 1.2e-13 80.1 103 51.5
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 1.2e-13 80.1 103 54.4
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 1.2e-13 80.1 121 48.8
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 1.2e-13 80.1 108 52.8
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 1.6e-13 79.7 111 51.4
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 1.6e-13 79.7 111 51.4
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.6e-13 79.7 110 50.0
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 2.1e-13 79.3 103 54.4
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 2.7e-13 79.0 103 51.5
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 3.5e-13 78.6 103 52.4
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 3.5e-13 78.6 103 52.4
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 3.5e-13 78.6 103 52.4
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.5e-13 78.6 72 68.1
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 3.5e-13 78.6 115 52.2
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 4.6e-13 78.2 110 51.8
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 7.9e-13 77.4 112 48.2
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 7.9e-13 77.4 106 48.1
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 7.9e-13 77.4 115 51.3
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 2.3e-12 75.9 105 49.5
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 2.3e-12 75.9 103 50.5
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 3.0e-12 75.5 105 53.3
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 3.0e-12 75.5 105 53.3
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 3.0e-12 75.5 105 53.3
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 3.9e-12 75.1 63 71.4
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 1.1e-11 73.6 116 44.0
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 1.1e-11 73.6 77 59.7
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.5e-11 72.4 100 49.0
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 3.3e-11 72.0 105 47.6
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 7.4e-11 70.9 105 48.6
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 9.6e-11 70.5 107 48.6
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 9.6e-11 70.5 81 59.3
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.6e-10 69.7 107 45.8
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 2.8e-10 68.9 106 50.9
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 3.6e-10 68.6 62 64.5
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 3.6e-10 68.6 62 64.5
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.2e-10 67.8 63 63.5
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 3.1e-09 65.5 63 60.3
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 1.2e-08 63.5 82 53.7
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 1.2e-08 63.5 112 49.1
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 3.4e-08 62.0 109 42.2
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.4e-08 62.0 110 50.0
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 5.8e-08 61.2 192 33.9
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 2.9e-07 58.9 74 51.4
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 2.9e-07 58.9 84 51.2
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.9e-07 58.2 74 51.4
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 1.1e-06 57.0 98 46.9
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.4e-06 56.6 50 66.0
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 1.4e-06 56.6 84 50.0
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 2.4e-06 55.8 74 47.3
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.2e-06 55.5 74 50.0


User provided reference genes

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