Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 0.0e+00 1179.9 611 100.0
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.0e-139 500.4 570 53.3
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 5.7e-134 482.3 638 49.1
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 2.2e-133 480.3 599 52.4
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 5.3e-132 475.7 597 50.1
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 1.2e-128 464.5 562 50.9
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 7.9e-128 461.8 574 51.9
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 7.4e-126 455.3 658 48.0
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 7.4e-126 455.3 658 48.0
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 1.1e-124 451.4 632 47.5
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 4.2e-121 439.5 676 45.3
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 9.4e-121 438.3 631 47.1
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 1.6e-120 437.6 648 45.2
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 6.1e-120 435.6 558 49.1
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.0e-119 434.9 633 47.2
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 2.3e-119 433.7 563 49.4
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.9e-119 433.0 662 44.7
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 6.7e-119 432.2 633 47.1
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.4e-118 429.5 648 45.7
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 4.4e-118 429.5 666 43.2
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 4.4e-118 429.5 550 49.3
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.2e-117 427.2 640 45.2
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.7e-117 426.4 631 47.2
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 8.2e-117 425.2 648 45.2
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.4e-116 424.5 646 45.7
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.8e-116 424.1 557 48.1
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.0e-115 420.6 600 46.7
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 2.0e-115 420.6 587 48.9
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 7.7e-115 418.7 566 47.7
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 1.3e-114 417.9 636 44.7
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 6.5e-114 415.6 581 48.0
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 5.5e-113 412.5 564 47.0
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.2e-112 411.4 631 45.0
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 2.1e-112 410.6 593 46.2
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 2.7e-112 410.2 565 46.2
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 3.6e-112 409.8 618 46.6
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.6e-112 409.8 557 46.9
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 6.1e-112 409.1 670 42.8
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 6.1e-112 409.1 570 46.8
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.0e-111 408.3 562 47.9
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 1.8e-111 407.5 567 46.7
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.2e-111 406.0 567 46.6
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 6.7e-111 405.6 562 47.9
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 6.7e-111 405.6 552 48.6
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 2.0e-110 404.1 705 43.0
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 9.7e-110 401.7 587 44.5
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 6.3e-109 399.1 592 44.1
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 1.1e-108 398.3 672 43.8
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.1e-108 398.3 575 45.0
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 1.2e-107 394.8 569 48.2
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.6e-107 394.4 582 44.3
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 3.5e-107 393.3 566 45.1
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 1.3e-106 391.3 556 46.2
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 8.5e-106 388.7 648 40.9
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 2.5e-105 387.1 549 45.4
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 3.2e-105 386.7 632 42.6
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 9.4e-105 385.2 635 43.6
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.2e-104 384.8 595 44.4
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.6e-104 384.4 647 41.6
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 4.7e-104 382.9 617 42.9
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.7e-104 382.9 570 44.4
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 4.7e-104 382.9 595 46.7
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 8.0e-104 382.1 563 46.7
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 8.0e-104 382.1 587 44.3
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.0e-103 381.7 663 41.6
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 4.0e-103 379.8 614 42.2
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 5.2e-103 379.4 626 43.0
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 5.2e-103 379.4 619 44.3
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 4.4e-102 376.3 620 43.2
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 1.3e-101 374.8 587 44.1
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 1.3e-101 374.8 629 42.1
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 1.7e-101 374.4 587 43.6
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.2e-101 374.0 621 42.0
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.1e-100 371.7 600 42.8
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 1.4e-100 371.3 620 42.1
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 9.1e-100 368.6 542 44.6
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 1.2e-99 368.2 649 42.4
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 3.5e-99 366.7 543 43.6
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 1.0e-98 365.2 693 38.1
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 5.5e-97 359.4 620 41.6
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 5.5e-97 359.4 562 44.1
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.6e-96 357.8 571 42.2
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.8e-96 357.1 588 43.9
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 1.4e-95 354.8 593 42.7
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 4.4e-94 349.7 583 42.5
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 1.3e-93 348.2 520 44.8
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 3.5e-91 340.1 536 43.5
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 9.5e-89 332.0 634 39.1
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 3.6e-88 330.1 586 41.6
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 3.4e-86 323.6 590 40.8
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 1.7e-85 321.2 504 43.8
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 1.9e-84 317.8 549 39.7
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 2.0e-83 314.3 561 39.9
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 1.9e-81 307.8 545 40.7
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 7.3e-81 305.8 645 37.2
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 2.8e-80 303.9 553 40.1
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 1.8e-79 301.2 573 40.1
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 1.2e-78 298.5 596 38.1
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 1.2e-78 298.5 577 39.5
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 1.5e-78 298.1 579 37.7
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.5e-78 298.1 554 39.4
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.5e-78 298.1 554 39.4
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 3.4e-78 297.0 231 66.2
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.7e-77 294.7 572 39.9
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 2.4e-76 290.8 554 40.4
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 6.6e-74 282.7 189 74.6
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 8.1e-72 275.8 542 40.4
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 5.2e-71 273.1 526 38.2
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 4.9e-69 266.5 509 37.5
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 6.6e-66 256.1 212 62.3
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.0e-58 232.3 245 52.2
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 3.3e-57 227.3 459 38.8
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 1.8e-55 221.5 445 38.7
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 5.8e-54 216.5 567 34.9
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 4.9e-53 213.4 492 37.8
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 7.1e-52 209.5 218 51.8
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 1.7e-50 204.9 411 40.4
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 2.3e-50 204.5 262 47.7
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.3e-45 188.7 438 34.5
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 2.4e-44 184.5 459 35.9
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 6.2e-40 169.9 388 32.5
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 5.1e-34 150.2 325 36.6
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 1.6e-32 145.2 101 70.3
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 1.4e-31 142.1 101 69.3
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 2.4e-31 141.4 437 31.1
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 5.3e-31 140.2 238 43.7
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 5.8e-30 136.7 146 54.1
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 1.2e-27 129.0 101 65.3
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 8.7e-26 122.9 115 53.9
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 3.7e-24 117.5 149 49.7
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.4e-23 115.5 105 55.2
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 6.9e-23 113.2 142 50.7
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 2.0e-22 111.7 133 45.1
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 2.6e-22 111.3 98 63.3
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 3.6e-19 100.9 74 60.8
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 3.6e-19 100.9 213 39.9
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 5.3e-15 87.0 79 60.8
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 5.3e-15 87.0 72 63.9
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 5.3e-15 87.0 73 57.5
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 5.9e-14 83.6 81 55.6
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 7.9e-11 73.2 118 38.1
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 5.1e-10 70.5 58 63.8
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.2e-08 65.1 57 57.9
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 8.2e-08 63.2 40 70.0
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 1.4e-07 62.4 48 68.8
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 4.5e-06 57.4 89 47.2
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 7.7e-06 56.6 53 49.1


User provided reference genes

Program Settings