Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00112 Aquilegia oxysepala HOM05D005288 ORTHO05D006574 8.1e-144 513.8 282 100.0
TAR628G1127 Trochodendron aralioides HOM05D005288 ORTHO05D006574 1.0e-101 374.0 284 73.6
Hma1.2p1_1099F.1_g256850 Hydrangea macrophylla HOM05D005288 ORTHO05D006574 2.9e-101 372.5 280 75.0
MD17G1181300 Malus domestica HOM05D005288 ORTHO05D006574 3.8e-101 372.1 285 72.6
Actinidia06665 Actinidia chinensis HOM05D005288 ORTHO05D006574 4.2e-100 368.6 284 73.2
CiPaw.04G084200 Carya illinoinensis HOM05D005288 ORTHO05D006574 4.7e-99 365.2 281 71.5
QL06p051886 Quercus lobata HOM05D005288 ORTHO05D006574 8.0e-99 364.4 292 69.9
Sed0016851 Sechium edule HOM05D005288 ORTHO05D006574 8.0e-99 364.4 280 72.1
Cfa002866 Carpinus fangiana HOM05D005288 ORTHO05D006574 1.0e-98 364.0 281 69.4
PSO238G0014 Papaver somniferum HOM05D005288 ORTHO05D006574 1.0e-98 364.0 283 72.1
QL02p010224 Quercus lobata HOM05D005288 ORTHO05D006574 1.0e-98 364.0 281 70.8
Dinv09930 Davidia involucrata HOM05D005288 ORTHO05D006574 1.8e-98 363.2 286 71.7
Lsat_1_v5_gn_5_89980 Lactuca sativa HOM05D005288 ORTHO05D006574 6.7e-98 361.3 284 71.1
Prupe.8G100400 Prunus persica HOM05D005288 ORTHO05D006574 8.8e-98 360.9 287 70.4
CSS0028117 Camellia sinensis var. sinensis HOM05D005288 ORTHO05D006574 2.0e-97 359.8 276 72.1
CSS0042405 Camellia sinensis var. sinensis HOM05D005288 ORTHO05D006574 2.0e-97 359.8 276 72.1
CANSAT78G2510 Cannabis sativa HOM05D005288 ORTHO05D006574 2.0e-97 359.8 281 70.5
MBI11_g07621_MAGBIO Magnolia biondii HOM05D005288 ORTHO05D006574 3.3e-97 359.0 293 72.4
Cpa.g.sc42.91 Carica papaya HOM05D005288 ORTHO05D006574 4.4e-97 358.6 282 69.9
Migut.H01124 Erythranthe guttata HOM05D005288 ORTHO05D006574 4.4e-97 358.6 283 70.7
SGA_v2.0_scaffold146G36155 Striga asiatica HOM05D005288 ORTHO05D006574 5.7e-97 358.2 280 71.4
CiPaw.03G124000 Carya illinoinensis HOM05D005288 ORTHO05D006574 7.4e-97 357.8 273 72.2
BcaB02g09811 Brassica carinata HOM05D005288 ORTHO05D006574 9.7e-97 357.5 286 66.8
A06p31470 Brassica napus HOM05D005288 ORTHO05D006574 1.3e-96 357.1 287 67.2
Lj4A865T28 Lonicera japonica HOM05D005288 ORTHO05D006574 1.3e-96 357.1 279 72.0
PSO210G3075 Papaver somniferum HOM05D005288 ORTHO05D006574 1.3e-96 357.1 285 70.9
Manes.12G150400 Manihot esculenta HOM05D005288 ORTHO05D006574 1.7e-96 356.7 282 71.3
CARHR278650 Cardamine hirsuta HOM05D005288 ORTHO05D006574 2.2e-96 356.3 283 68.9
FAN16G1456 Fragaria x ananassa HOM05D005288 ORTHO05D006574 2.2e-96 356.3 281 71.2
HanXRQChr17g0554451 Helianthus annuus HOM05D005288 ORTHO05D006574 2.2e-96 356.3 269 73.2
BcaC01g02699 Brassica carinata HOM05D005288 ORTHO05D006574 2.8e-96 355.9 288 67.4
C03p61490 Brassica napus HOM05D005288 ORTHO05D006574 2.8e-96 355.9 288 67.4
Prupe.6G163200 Prunus persica HOM05D005288 ORTHO05D006574 2.8e-96 355.9 280 70.0
FvH4_3g30590 Fragaria vesca HOM05D005288 ORTHO05D006574 3.7e-96 355.5 283 70.3
RcHm_v2.0_Chr5g0056641 Rosa chinensis HOM05D005288 ORTHO05D006574 3.7e-96 355.5 287 68.6
AL8G42090 Arabidopsis lyrata HOM05D005288 ORTHO05D006574 4.8e-96 355.1 287 68.6
BolC3t18410H Brassica oleracea HOM05D005288 ORTHO05D006574 4.8e-96 355.1 289 67.5
FAN25G0340 Fragaria x ananassa HOM05D005288 ORTHO05D006574 6.3e-96 354.8 284 70.4
GSVIVG01016205001 Vitis vinifera HOM05D005288 ORTHO05D006574 6.3e-96 354.8 285 69.5
Thhalv10004738m.g Eutrema salsugineum HOM05D005288 ORTHO05D006574 2.4e-95 352.8 287 66.9
Sabra16G0006900 Salix brachista HOM05D005288 ORTHO05D006574 2.4e-95 352.8 285 71.6
THA.LOC104799448 Tarenaya hassleriana HOM05D005288 ORTHO05D006574 2.4e-95 352.8 283 69.3
BcaC04g23299 Brassica carinata HOM05D005288 ORTHO05D006574 3.1e-95 352.4 288 67.7
BraA06t26084Z Brassica rapa HOM05D005288 ORTHO05D006574 3.1e-95 352.4 288 67.0
FAN21G3369 Fragaria x ananassa HOM05D005288 ORTHO05D006574 4.1e-95 352.1 284 70.1
BraA09t36528Z Brassica rapa HOM05D005288 ORTHO05D006574 5.3e-95 351.7 285 67.4
Carub.0008s2547 Capsella rubella HOM05D005288 ORTHO05D006574 5.3e-95 351.7 289 67.1
AUR62042368 Chenopodium quinoa HOM05D005288 ORTHO05D006574 5.3e-95 351.7 280 70.0
Thecc.02G155300 Theobroma cacao HOM05D005288 ORTHO05D006574 5.3e-95 351.7 276 70.3
A09p08770 Brassica napus HOM05D005288 ORTHO05D006574 7.0e-95 351.3 285 67.4
Potri.016G002400 Populus trichocarpa HOM05D005288 ORTHO05D006574 9.1e-95 350.9 283 70.7
Ah.12g062320 Amaranthus hybridus HOM05D005288 ORTHO05D006574 1.2e-94 350.5 283 69.6
CsaV3_5G027610 Cucumis sativus L. HOM05D005288 ORTHO05D006574 1.2e-94 350.5 288 66.7
Eucgr.I00243 Eucalyptus grandis HOM05D005288 ORTHO05D006574 1.6e-94 350.1 282 69.9
AT5G64670 Arabidopsis thaliana HOM05D005288 ORTHO05D006574 2.0e-94 349.7 287 68.3
Rhsim10G0141500 Rhododendron simsii HOM05D005288 ORTHO05D006574 2.6e-94 349.4 296 67.6
arahy.Tifrunner.gnm1.ann1.A0975M Arachis hypogaea HOM05D005288 ORTHO05D006574 4.5e-94 348.6 287 69.3
MSTRG.23423 Avicennia marina HOM05D005288 ORTHO05D006574 4.5e-94 348.6 286 68.5
C09p09960 Brassica napus HOM05D005288 ORTHO05D006574 4.5e-94 348.6 288 67.0
BolC9t53904H Brassica oleracea HOM05D005288 ORTHO05D006574 4.5e-94 348.6 288 67.0
Nn1g06103 Nelumbo nucifera HOM05D005288 ORTHO05D006574 4.5e-94 348.6 266 72.2
Ciclev10026233m.g Citrus clementina HOM05D005288 ORTHO05D006574 5.9e-94 348.2 278 67.6
Glyma.15G264500 Glycine max HOM05D005288 ORTHO05D006574 5.9e-94 348.2 275 70.9
BcaB04g19983 Brassica carinata HOM05D005288 ORTHO05D006574 1.0e-93 347.4 288 66.7
Lalb_Chr20g0108351 Lupinus albus HOM05D005288 ORTHO05D006574 1.0e-93 347.4 285 68.8
Atru.chr4.645 Acer truncatum HOM05D005288 ORTHO05D006574 1.3e-93 347.1 282 66.7
MELO3C022914.2 Cucumis melo HOM05D005288 ORTHO05D006574 1.3e-93 347.1 284 66.9
Glyma.08G162600 Glycine max HOM05D005288 ORTHO05D006574 1.3e-93 347.1 275 70.9
Peaxi162Scf00129g00316 Petunia axillaris HOM05D005288 ORTHO05D006574 2.2e-93 346.3 288 68.1
AUR62037110 Chenopodium quinoa HOM05D005288 ORTHO05D006574 2.9e-93 345.9 280 70.4
DCAR_029930 Daucus carota HOM05D005288 ORTHO05D006574 2.9e-93 345.9 277 70.0
Duzib052G0951 Durio zibethinus HOM05D005288 ORTHO05D006574 2.9e-93 345.9 275 69.1
Aa31LG1G17270 Aethionema arabicum HOM05D005288 ORTHO05D006574 3.8e-93 345.5 283 68.9
Nitab4.5_0007636g0020 Nicotiana tabacum HOM05D005288 ORTHO05D006574 5.0e-93 345.1 293 67.6
PGR119G1388 Punica granatum HOM05D005288 ORTHO05D006574 5.0e-93 345.1 281 69.0
Gohir.A04G109416 Gossypium hirsutum HOM05D005288 ORTHO05D006574 8.5e-93 344.4 276 69.6
Nitab4.5_0002064g0080 Nicotiana tabacum HOM05D005288 ORTHO05D006574 8.5e-93 344.4 293 67.2
Phvul.005G016800 Phaseolus vulgaris HOM05D005288 ORTHO05D006574 1.1e-92 344.0 275 70.2
Sopen02g025940 Solanum pennellii HOM05D005288 ORTHO05D006574 1.1e-92 344.0 282 68.8
Lj1g0011811 Lotus japonicus HOM05D005288 ORTHO05D006574 1.9e-92 343.2 277 69.0
ECA248G2357 Erigeron canadensis HOM05D005288 ORTHO05D006574 2.5e-92 342.8 216 81.5
arahy.Tifrunner.gnm1.ann1.MGEL7E Arachis hypogaea HOM05D005288 ORTHO05D006574 3.2e-92 342.4 293 67.6
MSTRG.2688 Avicennia marina HOM05D005288 ORTHO05D006574 3.2e-92 342.4 285 68.1
TWI75G0931 Tripterygium wilfordii HOM05D005288 ORTHO05D006574 4.2e-92 342.0 280 67.5
Zm00001eb129960 Zea mays HOM05D005288 ORTHO05D006574 5.5e-92 341.7 220 79.1
CDE04G3439 Ceratophyllum demersum HOM05D005288 ORTHO05D006574 7.2e-92 341.3 225 78.7
EL10As1g23109 Beta vulgaris HOM05D005288 ORTHO05D006574 9.4e-92 340.9 277 68.6
Oeu028499.1 Olea europaea HOM05D005288 ORTHO05D006574 9.4e-92 340.9 284 69.7
Sp2g27730 Schrenkiella parvula HOM05D005288 ORTHO05D006574 9.4e-92 340.9 270 68.5
COL.COLO4_33103 Corchorus olitorius HOM05D005288 ORTHO05D006574 1.6e-91 340.1 216 80.1
Medtr1g031890 Medicago truncatula HOM05D005288 ORTHO05D006574 1.6e-91 340.1 291 65.6
Potri.001G324300 Populus trichocarpa HOM05D005288 ORTHO05D006574 1.6e-91 340.1 279 67.7
VMungo0464G1657 Vigna mungo HOM05D005288 ORTHO05D006574 1.6e-91 340.1 275 69.5
Cc03_g13010 Coffea canephora HOM05D005288 ORTHO05D006574 2.1e-91 339.7 295 65.8
Gorai.012G135300 Gossypium raimondii HOM05D005288 ORTHO05D006574 3.6e-91 339.0 275 69.5
Medtr1g085490 Medicago truncatula HOM05D005288 ORTHO05D006574 4.7e-91 338.6 280 66.8
SGA_v2.0_scaffold76G25165 Striga asiatica HOM05D005288 ORTHO05D006574 4.7e-91 338.6 297 65.7
Ca_24797_v3 Cicer arietinum L. HOM05D005288 ORTHO05D006574 8.0e-91 337.8 276 68.5
Medtr4g118060 Medicago truncatula HOM05D005288 ORTHO05D006574 8.0e-91 337.8 280 67.1
Ca_06746_v3 Cicer arietinum L. HOM05D005288 ORTHO05D006574 1.0e-90 337.4 272 68.8
Gohir.D04G148800 Gossypium hirsutum HOM05D005288 ORTHO05D006574 1.0e-90 337.4 275 69.1
Os08g0310100 Oryza sativa ssp. japonica HOM05D005288 ORTHO05D006574 1.4e-90 337.0 220 78.6
TWI79G0070 Tripterygium wilfordii HOM05D005288 ORTHO05D006574 1.4e-90 337.0 274 67.9
unitig_27.g25064 Utricularia gibba HOM05D005288 ORTHO05D006574 1.4e-90 337.0 276 69.9
ATR0681G389 Amborella trichopoda HOM05D005288 ORTHO05D006574 1.8e-90 336.7 205 82.9
Psat6g157720 Pisum sativum HOM05D005288 ORTHO05D006574 5.2e-90 335.1 281 66.5
Sc22g0002320 Simmondsia chinensis HOM05D005288 ORTHO05D006574 1.2e-89 334.0 265 70.9
Hund15173 Selenicereus undatus HOM05D005288 ORTHO05D006574 7.5e-89 331.3 283 67.1
CAN.G1681.15 Capsicum annuum HOM05D005288 ORTHO05D006574 2.4e-87 326.2 269 67.3
Oeu064304.2 Olea europaea HOM05D005288 ORTHO05D006574 1.3e-85 320.5 332 58.7
PGSC0003DMG400016731 Solanum tuberosum HOM05D005288 ORTHO05D006574 3.8e-85 318.9 266 67.7
Solyc02g081310.3 Solanum lycopersicum HOM05D005288 ORTHO05D006574 1.5e-84 317.0 266 68.4
SHI11525 Sapria himalayana HOM05D005288 ORTHO05D006574 1.1e-79 300.8 295 65.4
vmacro12445 Vaccinium macrocarpon HOM05D005288 ORTHO05D006574 2.1e-75 286.6 191 77.5
Haze_25184 Corylus avellana HOM05D005288 ORTHO05D006574 3.3e-68 262.7 148 88.5
Hma1.2p1_1099F.1_g256840 Hydrangea macrophylla HOM05D005288 ORTHO05D006574 2.8e-67 259.6 144 91.0
Lalb_Chr25g0284211 Lupinus albus HOM05D005288 ORTHO05D006574 8.0e-67 258.1 144 89.6
HPP92_011348 Vanilla planifolia HOM05D005288 ORTHO05D006574 2.3e-66 256.5 153 83.0
CDE07G0732 Ceratophyllum demersum HOM05D002402 ORTHO05D002633 1.9e-63 246.9 141 88.7
Dinv05183 Davidia involucrata HOM05D005288 ORTHO05D006574 1.6e-62 243.8 158 80.4
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 1.7e-56 223.8 191 59.2
Mapoly0020s0151 Marchantia polymorpha HOM05D005288 ORTHO05D006574 6.4e-56 221.9 242 51.2
MBI11_g36871_MAGBIO Magnolia biondii HOM05D005288 ORTHO05D006574 1.1e-55 221.1 125 91.2
FAN11G2409 Fragaria x ananassa HOM05D005288 ORTHO05D006574 6.0e-54 215.3 119 89.1
Mapoly0177s0003 Marchantia polymorpha HOM05D005288 ORTHO05D006574 2.3e-53 213.4 244 50.4
AagrBONN_evm.TU.Sc2ySwM_344.1252 Anthoceros agrestis HOM05D005288 ORTHO05D000776 5.6e-52 208.8 197 55.3
vmacro12831 Vaccinium macrocarpon HOM05D005288 ORTHO05D006574 6.2e-51 205.3 114 87.7
MBI11_g48066_MAGBIO Magnolia biondii HOM05D005288 ORTHO05D006574 9.9e-49 198.0 104 94.2
SMO367G0866 Selaginella moellendorffii HOM05D005288 ORTHO05D006574 1.9e-44 183.7 160 60.0
Glyma.15G244400 Glycine max HOM05D005288 ORTHO05D006574 2.4e-42 176.8 92 91.3
PRCOL_00002014 Prasinoderma coloniale HOM05D005288 ORTHO05D006574 5.3e-34 149.1 214 43.0
MCO05G392 Micromonas commoda HOM05D005288 ORTHO05D006574 2.3e-29 133.7 224 41.5
Pp3c25_6490 Physcomitrium patens HOM05D005288 ORTHO05D006574 6.6e-29 132.1 137 53.3
TAR381G0280 Trochodendron aralioides HOM05D005288 ORTHO05D006574 3.3e-28 129.8 154 64.9
Cfa023704 Carpinus fangiana HOM05D005288 ORTHO05D006574 4.3e-20 102.8 146 40.4
Cre11.g476800 Chlamydomonas reinhardtii HOM05D005288 ORTHO05D006574 8.1e-19 98.6 174 36.8
Haze_26805 Corylus avellana HOM05D005288 ORTHO05D006574 5.3e-18 95.9 122 47.5
Lalb_Chr25g0284201 Lupinus albus HOM05D005288 ORTHO05D006574 1.2e-17 94.7 142 45.8
MBI11_g45437_MAGBIO Magnolia biondii HOM05D005288 ORTHO05D006574 2.0e-17 94.0 144 51.4
Hma1.2p1_1099F.1_g256860 Hydrangea macrophylla HOM05D005288 ORTHO05D006574 2.6e-17 93.6 125 54.4
MBI11_g29951_MAGBIO Magnolia biondii HOM05D005288 ORTHO05D006574 2.5e-15 87.0 147 44.9
MBI11_g45438_MAGBIO Magnolia biondii HOM05D005288 ORTHO05D006574 3.4e-09 66.6 40 75.0
Hund25060 Selenicereus undatus HOM05D004761 ORTHO05D005813 3.2e-07 60.1 130 34.6
Cre14.g612450 Chlamydomonas reinhardtii HOM05D004761 ORTHO05D005813 1.6e-06 57.8 127 34.6
TAR629G2706 Trochodendron aralioides HOM05D004761 ORTHO05D005813 1.6e-06 57.8 130 35.4
Zm00001eb008910 Zea mays HOM05D004761 ORTHO05D005813 2.7e-06 57.0 130 33.8
PGR119G1215 Punica granatum HOM05D004761 ORTHO05D005813 3.5e-06 56.6 131 34.4
Os03g0219900 Oryza sativa ssp. japonica HOM05D004761 ORTHO05D005813 4.6e-06 56.2 127 33.1
Ah.03g137610 Amaranthus hybridus HOM05D004761 ORTHO05D005813 7.9e-06 55.5 131 34.4
Cfa018591 Carpinus fangiana HOM05D004761 ORTHO05D005813 7.9e-06 55.5 130 33.1
CiPaw.16G065200 Carya illinoinensis HOM05D004761 ORTHO05D005813 7.9e-06 55.5 130 32.3
MD13G1041400 Malus domestica HOM05D004761 ORTHO05D005813 7.9e-06 55.5 127 33.9
MD16G1042300 Malus domestica HOM05D004761 ORTHO05D005813 7.9e-06 55.5 127 33.9


User provided reference genes

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