Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1578.5 843 100.0
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1314.7 842 83.0
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1286.6 846 81.2
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1255.0 864 79.2
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1250.7 864 78.8
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1222.2 830 76.7
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1216.4 810 80.7
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1203.0 832 77.3
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1171.0 853 72.1
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1171.0 827 75.9
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1166.4 842 73.4
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1166.0 833 74.1
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1164.8 791 76.5
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1164.1 830 73.6
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1164.1 830 73.6
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1162.9 831 73.3
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1162.1 849 73.0
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1161.0 849 73.0
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1159.4 849 74.3
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1158.3 830 73.3
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1158.3 834 74.9
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1157.9 849 73.0
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1157.5 839 73.3
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1155.6 830 73.0
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1155.2 835 75.2
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1154.0 830 73.0
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1152.9 757 79.7
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1151.0 758 79.3
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1149.4 852 72.3
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1149.4 818 72.6
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1147.1 838 71.5
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1146.3 837 71.8
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1143.6 837 71.7
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1142.5 842 72.9
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1142.5 840 72.6
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1142.1 837 71.8
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1141.7 846 71.9
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 0.0e+00 1139.8 822 73.2
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1139.4 853 70.5
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1137.1 841 71.2
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1134.0 842 72.7
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1132.1 839 70.8
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1130.9 834 71.9
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1130.2 843 71.9
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1129.0 845 72.1
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1125.5 836 72.4
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1124.0 829 72.4
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1123.6 843 71.9
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1122.8 825 71.2
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1122.5 843 71.5
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1116.7 845 71.1
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1114.8 833 72.3
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1114.8 844 70.6
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1114.8 835 70.7
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1114.4 843 71.4
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 841 71.1
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1112.8 849 71.5
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 0.0e+00 1107.0 833 70.9
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1106.3 841 70.6
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1103.6 841 70.4
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1102.8 842 71.7
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1101.7 832 71.3
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1101.7 841 69.8
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1101.3 904 67.6
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1097.0 950 63.7
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1095.9 841 69.8
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1093.6 842 69.5
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1090.1 841 69.9
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1085.9 793 70.1
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1082.0 842 69.8
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1076.2 847 68.7
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 1.2e-311 1072.8 834 68.1
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 2.9e-311 1071.6 841 69.7
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 2.5e-310 1068.5 835 67.3
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 5.7e-310 1067.4 904 65.2
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 3.7e-309 1064.7 765 72.7
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 4.5e-307 1057.7 855 66.9
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 2.2e-306 1055.4 874 67.2
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 5.0e-306 1054.3 829 67.3
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 9.4e-305 1050.0 826 67.4
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 2.7e-304 1048.5 829 67.3
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 8.0e-304 1047.0 827 66.9
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 5.2e-303 1044.3 834 67.6
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 8.8e-303 1043.5 826 67.3
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 1.7e-301 1039.3 825 67.2
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 2.8e-301 1038.5 820 66.5
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 6.3e-301 1037.3 829 65.5
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 8.2e-301 1036.9 830 66.7
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 1.1e-300 1036.6 826 66.5
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 9.1e-300 1033.5 820 66.3
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 2.0e-299 1032.3 820 66.2
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 5.9e-299 1030.8 829 65.9
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 3.2e-297 1025.0 772 72.9
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 4.2e-297 1024.6 825 64.5
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 3.4e-294 1015.0 837 66.7
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 1.9e-289 999.2 828 65.0
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 7.2e-289 997.3 734 69.9
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 1.7e-285 986.1 672 73.8
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 3.7e-285 984.9 931 60.9
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 4.1e-284 981.5 841 62.2
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 3.8e-282 974.9 805 61.6
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 1.1e-281 973.4 648 76.5
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 1.9e-281 972.6 648 76.5
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 2.0e-275 952.6 670 70.9
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 4.6e-275 951.4 636 76.9
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.9e-273 946.0 835 62.5
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.5e-265 919.8 847 57.4
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 3.6e-264 915.2 626 72.7
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 6.2e-264 914.4 846 56.5
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 3.7e-261 905.2 571 79.0
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 4.9e-253 878.2 791 57.1
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 6.2e-240 834.7 800 53.8
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 8.1e-240 834.3 847 59.7
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 6.0e-235 818.1 837 57.8
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 3.0e-202 709.5 428 83.4
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 6.1e-163 578.9 481 65.9
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 7.5e-161 572.0 441 70.3
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.7e-144 516.5 380 73.7
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 1.5e-132 478.0 322 75.5
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 4.0e-130 469.9 779 37.5
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 4.6e-126 456.4 307 72.3
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 5.1e-125 453.0 268 83.6
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 2.2e-120 437.6 787 34.3
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 5.8e-105 386.3 381 61.4
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 6.7e-101 372.9 855 31.5
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.1e-98 364.0 279 71.3
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 5.3e-82 310.1 399 51.6
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 6.8e-53 213.4 282 47.9
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 6.3e-51 206.8 141 75.2
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 1.1e-47 196.1 125 78.4
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 1.8e-45 188.7 131 69.5
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.7e-40 172.2 142 68.3
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.3e-35 156.0 149 56.4
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.7e-35 155.6 149 56.4
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 1.0e-32 146.4 121 66.9
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.3e-32 146.0 160 53.8
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 1.5e-15 89.4 70 65.7
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 4.9e-11 74.3 243 29.2
unitig_37.g12849 Utricularia gibba HOM05D005394 ORTHO05D418089 6.2e-06 57.4 72 58.3


User provided reference genes

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