Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 0.0e+00 1852.8 910 100.0
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 2.0e-199 700.3 1173 41.0
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 5.1e-179 632.5 1091 40.5
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 2.1e-153 547.4 1171 35.4
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 9.6e-146 521.9 1095 36.1
AUR62043520 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.8e-115 421.4 1093 33.6
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.8e-94 350.5 1255 30.1
Ah.16g105450 Amaranthus hybridus HOM05D012164 ORTHO05D003767 9.8e-82 309.3 189 83.1
Ah.16g105510 Amaranthus hybridus HOM05D012164 ORTHO05D003767 2.6e-66 258.1 384 42.7
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.0e-58 231.9 1124 26.0
Ah.16g105410 Amaranthus hybridus HOM05D012164 ORTHO05D003767 3.8e-33 147.9 89 80.9
Ah.16g105520 Amaranthus hybridus HOM05D012164 ORTHO05D003767 6.4e-33 147.1 89 80.9
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 6.9e-27 127.1 1139 22.6
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.1e-11 76.6 768 22.9
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.1e-11 76.6 768 22.9
Sc23g0005170 Simmondsia chinensis HOM05D012164 ORTHO05D003767 6.9e-11 73.9 978 22.6
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 9.1e-11 73.6 768 21.5
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.2e-10 73.2 67 46.3
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 1.2e-10 73.2 168 35.1
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 2.0e-10 72.4 81 42.0
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 2.6e-10 72.0 66 42.4
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.5e-10 71.2 66 42.4
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 5.9e-10 70.9 768 21.4
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 5.9e-10 70.9 768 21.4
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 7.7e-10 70.5 257 27.2
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.0e-09 70.1 99 41.4
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.0e-09 70.1 96 39.6
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.3e-09 69.7 66 40.9
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.9e-09 68.6 61 45.9
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 2.9e-09 68.6 87 41.4
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 2.9e-09 68.6 81 40.7
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.9e-09 68.6 73 43.8
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.8e-09 68.2 152 31.6
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 5.0e-09 67.8 70 45.7
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 6.5e-09 67.4 74 44.6
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 6.5e-09 67.4 226 25.7
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 8.5e-09 67.0 89 39.3
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 1.4e-08 66.2 595 21.3
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.4e-08 66.2 59 52.5
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.4e-08 66.2 175 29.1
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.9e-08 65.9 79 38.0
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.9e-08 65.9 611 22.9
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.9e-08 65.9 239 30.1
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.9e-08 65.9 67 41.8
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.5e-08 65.5 57 47.4
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 3.2e-08 65.1 73 42.5
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 3.2e-08 65.1 850 22.2
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 3.2e-08 65.1 850 22.2
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 3.2e-08 65.1 57 50.9
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 3.2e-08 65.1 76 43.4
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 3.2e-08 65.1 111 33.3
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 3.2e-08 65.1 78 38.5
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.2e-08 64.7 83 41.0
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 4.2e-08 64.7 89 38.2
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 4.2e-08 64.7 81 44.4
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 5.5e-08 64.3 76 43.4
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 5.5e-08 64.3 850 22.1
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 5.5e-08 64.3 618 22.5
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 5.5e-08 64.3 575 23.0
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.5e-08 64.3 106 34.0
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 5.5e-08 64.3 76 38.2
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 7.2e-08 63.9 279 25.1
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 7.2e-08 63.9 125 30.4
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 7.2e-08 63.9 76 40.8
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 7.2e-08 63.9 59 45.8
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 9.4e-08 63.5 61 45.9
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.2e-07 63.2 75 38.7
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.2e-07 63.2 76 39.5
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.2e-07 63.2 83 39.8
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.2e-07 63.2 76 39.5
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.6e-07 62.8 66 43.9
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 1.6e-07 62.8 180 28.3
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 2.1e-07 62.4 66 36.4
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 2.1e-07 62.4 625 19.2
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 2.1e-07 62.4 81 40.7
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.1e-07 62.4 76 42.1
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 2.7e-07 62.0 98 35.7
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 3.6e-07 61.6 64 45.3
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 4.7e-07 61.2 62 41.9
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 4.7e-07 61.2 59 45.8
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 6.1e-07 60.8 105 34.3
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 6.1e-07 60.8 277 24.2
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 6.1e-07 60.8 57 50.9
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 6.1e-07 60.8 72 38.9
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 7.9e-07 60.5 66 45.5
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 1.0e-06 60.1 59 42.4
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.0e-06 60.1 230 30.9
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 1.0e-06 60.1 66 43.9
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.4e-06 59.7 68 39.7
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.4e-06 59.7 399 22.3
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 1.4e-06 59.7 77 39.0
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 1.8e-06 59.3 58 46.6
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 1.8e-06 59.3 152 28.3
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 2.3e-06 58.9 66 43.9
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.3e-06 58.9 66 43.9
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 3.9e-06 58.2 54 44.4
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 3.9e-06 58.2 62 43.5
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 3.9e-06 58.2 63 39.7
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 5.1e-06 57.8 119 30.3
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.1e-06 57.8 230 29.6
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 5.1e-06 57.8 113 31.0
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 5.1e-06 57.8 62 38.7
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 6.7e-06 57.4 807 22.3
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.7e-06 57.4 230 29.6
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 6.7e-06 57.4 80 41.2
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 6.7e-06 57.4 82 39.0
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 8.8e-06 57.0 58 41.4


User provided reference genes

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