Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g085060 Amaranthus hybridus HOM05D006189 ORTHO05D007765 1.0e-151 540.0 274 100.0
EL10Ac9g22332 Beta vulgaris HOM05D006189 ORTHO05D007765 2.3e-111 406.0 288 74.7
Sc24g0002570 Simmondsia chinensis HOM05D006189 ORTHO05D007765 1.3e-101 373.6 262 71.8
GSVIVG01021771001 Vitis vinifera HOM05D006189 ORTHO05D007765 1.8e-100 369.8 266 70.7
CiPaw.09G147800 Carya illinoinensis HOM05D006189 ORTHO05D007765 2.7e-99 365.9 262 71.0
AUR62030247 Chenopodium quinoa HOM05D006189 ORTHO05D007765 3.8e-98 362.1 240 77.5
Haze_05946 Corylus avellana HOM05D006189 ORTHO05D007765 8.6e-98 360.9 262 69.8
QL04p073052 Quercus lobata HOM05D006189 ORTHO05D007765 8.6e-98 360.9 261 70.5
AUR62027598 Chenopodium quinoa HOM05D006189 ORTHO05D007765 1.1e-97 360.5 240 77.1
CSS0031891 Camellia sinensis var. sinensis HOM05D006189 ORTHO05D007765 4.2e-97 358.6 255 72.5
Cfa000769 Carpinus fangiana HOM05D006189 ORTHO05D007765 4.2e-97 358.6 262 69.8
Rhsim13G0125300 Rhododendron simsii HOM05D006189 ORTHO05D007765 4.2e-97 358.6 255 71.8
Duzib235G1073 Durio zibethinus HOM05D006189 ORTHO05D007765 7.2e-97 357.8 268 68.3
Atru.chr10.686 Acer truncatum HOM05D006189 ORTHO05D007765 1.2e-96 357.1 271 68.3
vmacro03465 Vaccinium macrocarpon HOM05D006189 ORTHO05D007765 1.2e-96 357.1 255 72.5
COL.COLO4_26883 Corchorus olitorius HOM05D006189 ORTHO05D007765 1.6e-96 356.7 266 68.8
Actinidia29243 Actinidia chinensis HOM05D006189 ORTHO05D007765 2.8e-96 355.9 255 71.8
MBI18_g27139_MAGBIO Magnolia biondii HOM05D006189 ORTHO05D007765 2.8e-96 355.9 278 66.9
Manes.14G126200 Manihot esculenta HOM05D006189 ORTHO05D007765 8.0e-96 354.4 255 70.2
Thecc.06G008600 Theobroma cacao HOM05D006189 ORTHO05D007765 1.0e-95 354.0 268 68.3
Glyma.15G135500 Glycine max HOM05D006189 ORTHO05D007765 1.8e-95 353.2 255 70.2
Lalb_Chr18g0058331 Lupinus albus HOM05D006189 ORTHO05D007765 1.8e-95 353.2 268 66.0
TAR626G0344 Trochodendron aralioides HOM05D006189 ORTHO05D007765 1.8e-95 353.2 255 69.8
arahy.Tifrunner.gnm1.ann1.HZ123V Arachis hypogaea HOM05D006189 ORTHO05D007765 3.0e-95 352.4 262 67.6
Ca_00927_v3 Cicer arietinum L. HOM05D006189 ORTHO05D007765 3.0e-95 352.4 255 69.4
Eucgr.D01017 Eucalyptus grandis HOM05D006189 ORTHO05D007765 3.0e-95 352.4 263 67.7
Dinv06442 Davidia involucrata HOM05D006189 ORTHO05D007765 4.0e-95 352.1 267 68.9
Gohir.D02G105200 Gossypium hirsutum HOM05D006189 ORTHO05D007765 4.0e-95 352.1 284 65.1
Potri.011G157300 Populus trichocarpa HOM05D006189 ORTHO05D007765 5.2e-95 351.7 255 69.8
PSO541G1785 Papaver somniferum HOM05D006189 ORTHO05D007765 6.8e-95 351.3 262 69.5
Migut.M01928 Erythranthe guttata HOM05D006189 ORTHO05D007765 8.8e-95 350.9 272 67.3
HanXRQChr10g0296271 Helianthus annuus HOM05D006189 ORTHO05D007765 1.2e-94 350.5 258 67.8
arahy.Tifrunner.gnm1.ann1.5RXD5Y Arachis hypogaea HOM05D006189 ORTHO05D007765 3.4e-94 349.0 253 68.8
MELO3C002872.2 Cucumis melo HOM05D006189 ORTHO05D007765 3.4e-94 349.0 278 66.2
Lj6g0027485 Lotus japonicus HOM05D006189 ORTHO05D007765 5.7e-94 348.2 262 67.6
arahy.Tifrunner.gnm1.ann1.4Q5DUA Arachis hypogaea HOM05D006189 ORTHO05D007765 7.5e-94 347.8 265 65.7
ClCG03G008560 Citrullus lanatus HOM05D006189 ORTHO05D007765 9.8e-94 347.4 255 69.4
Thhalv10025851m.g Eutrema salsugineum HOM05D006189 ORTHO05D007765 1.3e-93 347.1 266 66.9
PSO675G7004 Papaver somniferum HOM05D006189 ORTHO05D007765 2.2e-93 346.3 282 65.2
TWI38G1238 Tripterygium wilfordii HOM05D006189 ORTHO05D007765 2.2e-93 346.3 255 68.6
DCAR_005641 Daucus carota HOM05D006189 ORTHO05D007765 2.8e-93 345.9 262 66.0
CAN.G565.1 Capsicum annuum HOM05D006189 ORTHO05D007765 3.7e-93 345.5 255 67.5
ECA234G0756 Erigeron canadensis HOM05D006189 ORTHO05D007765 4.9e-93 345.1 253 67.6
Gorai.005G119400 Gossypium raimondii HOM05D006189 ORTHO05D007765 4.9e-93 345.1 284 64.1
Hund17667 Selenicereus undatus HOM05D006189 ORTHO05D007765 6.3e-93 344.7 282 65.2
C01p14490 Brassica napus HOM05D006189 ORTHO05D007765 8.3e-93 344.4 260 68.1
Cc09_g07340 Coffea canephora HOM05D006189 ORTHO05D007765 8.3e-93 344.4 255 69.8
BolC1t01404H Brassica oleracea HOM05D006189 ORTHO05D007765 1.1e-92 344.0 260 68.1
MSTRG.16306 Avicennia marina HOM05D006189 ORTHO05D007765 1.4e-92 343.6 255 68.6
Sed0000978 Sechium edule HOM05D006189 ORTHO05D007765 1.8e-92 343.2 255 68.2
TPR.G8020 Trifolium pratense HOM05D006189 ORTHO05D007765 1.8e-92 343.2 262 67.2
Phvul.006G123300 Phaseolus vulgaris HOM05D006189 ORTHO05D007765 2.4e-92 342.8 255 67.1
Carub.0007s2069 Capsella rubella HOM05D006189 ORTHO05D007765 3.1e-92 342.4 266 66.2
Prupe.4G101000 Prunus persica HOM05D006189 ORTHO05D007765 3.1e-92 342.4 255 69.8
RcHm_v2.0_Chr5g0018051 Rosa chinensis HOM05D006189 ORTHO05D007765 4.1e-92 342.0 255 68.6
Aa31LG6G2850 Aethionema arabicum HOM05D006189 ORTHO05D007765 5.4e-92 341.7 266 66.2
BcaC09g51315 Brassica carinata HOM05D006189 ORTHO05D007765 5.4e-92 341.7 260 67.7
Medtr2g031990 Medicago truncatula HOM05D006189 ORTHO05D007765 5.4e-92 341.7 262 65.6
BcaNung04155 Brassica carinata HOM05D006189 ORTHO05D007765 7.0e-92 341.3 260 67.7
Ciclev10016184m.g Citrus clementina HOM05D006189 ORTHO05D007765 7.0e-92 341.3 254 68.9
BraA01t01159Z Brassica rapa HOM05D006189 ORTHO05D007765 9.2e-92 340.9 266 66.2
Oeu063153.2 Olea europaea HOM05D006189 ORTHO05D007765 1.2e-91 340.5 255 67.5
PGSC0003DMG400028033 Solanum tuberosum HOM05D006189 ORTHO05D007765 1.2e-91 340.5 290 62.1
AL7G33390 Arabidopsis lyrata HOM05D006189 ORTHO05D007765 1.6e-91 340.1 255 67.8
Sp7g18830 Schrenkiella parvula HOM05D006189 ORTHO05D007765 4.5e-91 338.6 260 67.3
A01p12170 Brassica napus HOM05D006189 ORTHO05D007765 5.9e-91 338.2 266 65.8
MD10G1243100 Malus domestica HOM05D006189 ORTHO05D007765 5.9e-91 338.2 255 68.2
FAN21G1916 Fragaria x ananassa HOM05D006189 ORTHO05D007765 7.8e-91 337.8 255 67.1
FvH4_3g11150 Fragaria vesca HOM05D006189 ORTHO05D007765 1.0e-90 337.4 255 67.5
FAN16G1953 Fragaria x ananassa HOM05D006189 ORTHO05D007765 1.3e-90 337.0 265 64.2
SalBow8G0058 Salvia bowleyana HOM05D006189 ORTHO05D007765 1.7e-90 336.7 255 67.1
SalBow8G0354 Salvia bowleyana HOM05D006189 ORTHO05D007765 1.7e-90 336.7 255 67.1
Nitab4.5_0010673g0010 Nicotiana tabacum HOM05D006189 ORTHO05D007765 2.9e-90 335.9 268 63.1
Nitab4.5_0002819g0010 Nicotiana tabacum HOM05D006189 ORTHO05D007765 8.6e-90 334.3 255 65.9
VMungo0540G1817 Vigna mungo HOM05D006189 ORTHO05D007765 8.6e-90 334.3 290 60.7
AT4G20760 Arabidopsis thaliana HOM05D006189 ORTHO05D007765 1.5e-89 333.6 260 65.8
Solyc02g023990.3 Solanum lycopersicum HOM05D006189 ORTHO05D007765 1.5e-89 333.6 268 64.2
Sopen02g006700 Solanum pennellii HOM05D006189 ORTHO05D007765 2.5e-89 332.8 268 64.2
Lsat_1_v5_gn_5_148401 Lactuca sativa HOM05D006189 ORTHO05D007765 7.3e-89 331.3 267 63.3
FAN25G1707 Fragaria x ananassa HOM05D006189 ORTHO05D007765 1.2e-88 330.5 255 66.7
Sabra11G0142800 Salix brachista HOM05D006189 ORTHO05D007765 1.2e-88 330.5 350 53.1
Nn7g37778 Nelumbo nucifera HOM05D006189 ORTHO05D007765 1.6e-88 330.1 255 65.9
Cpa.g.c30210.1 Carica papaya HOM05D006189 ORTHO05D007765 2.8e-88 329.3 240 68.8
Os12g0609500 Oryza sativa ssp. japonica HOM05D006189 ORTHO05D007765 1.8e-87 326.6 255 67.1
SEGI_07893 Sequoiadendron giganteum HOM05D006189 ORTHO05D007765 6.8e-87 324.7 255 65.1
Glyma.09G029700 Glycine max HOM05D006189 ORTHO05D007765 2.6e-86 322.8 240 67.1
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 1.1e-84 317.4 248 65.3
ATR0763G139 Amborella trichopoda HOM05D006189 ORTHO05D007765 3.2e-84 315.8 243 67.1
CDE02G4463 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 7.0e-84 314.7 255 65.5
Gohir.A03G088500 Gossypium hirsutum HOM05D006189 ORTHO05D007765 1.7e-82 310.1 270 62.2
Hma1.2p1_1192F.1_g265520 Hydrangea macrophylla HOM05D006189 ORTHO05D007765 5.0e-82 308.5 231 69.3
CsaV3_1G037630 Cucumis sativus L. HOM05D006189 ORTHO05D007765 8.6e-82 307.8 258 63.6
CANSAT35G1316 Cannabis sativa HOM05D006189 ORTHO05D007765 6.8e-79 298.1 259 60.2
AagrBONN_evm.TU.Sc2ySwM_228.1434 Anthoceros agrestis HOM05D006189 ORTHO05D007765 8.9e-79 297.7 278 55.4
SMO116G0118 Selaginella moellendorffii HOM05D006189 ORTHO05D007765 9.8e-78 294.3 269 56.1
Mapoly0158s0008 Marchantia polymorpha HOM05D006189 ORTHO05D007765 3.7e-77 292.4 256 59.4
Pp3c10_7720 Physcomitrium patens HOM05D006189 ORTHO05D007765 1.3e-74 283.9 256 59.8
Peaxi162Scf00395g00112 Petunia axillaris HOM05D006189 ORTHO05D007765 2.0e-70 270.0 223 61.4
PSO541G6221 Papaver somniferum HOM05D006189 ORTHO05D007765 1.4e-68 263.8 224 62.9
Lj2A337T31 Lonicera japonica HOM05D006189 ORTHO05D007765 3.5e-67 259.2 283 53.0
Psat1g164320 Pisum sativum HOM05D006189 ORTHO05D007765 1.1e-65 254.2 213 62.0
arahy.Tifrunner.gnm1.ann1.FHXA43 Arachis hypogaea HOM05D006189 ORTHO05D007765 1.2e-64 250.8 246 52.4
TPR.G21393 Trifolium pratense HOM05D006189 ORTHO05D007765 1.5e-62 243.8 188 64.9
Aqoxy1G01513 Aquilegia oxysepala HOM05D006189 ORTHO05D007765 5.6e-57 225.3 266 51.1
CARHR227300 Cardamine hirsuta HOM05D006189 ORTHO05D007765 1.3e-53 214.2 158 69.0
Zm00001eb031410 Zea mays HOM05D006189 ORTHO05D007765 1.7e-50 203.8 157 68.8
HPP92_015693 Vanilla planifolia HOM05D006189 ORTHO05D007765 3.6e-48 196.1 146 69.2
MCO04G545 Micromonas commoda HOM05D006189 ORTHO05D007765 2.4e-47 193.4 253 42.3
Hma1.2p1_1192F.1_g265540 Hydrangea macrophylla HOM05D006189 ORTHO05D007765 1.6e-43 180.6 130 70.0
unitig_92.g28182 Utricularia gibba HOM05D006189 ORTHO05D007765 9.0e-39 164.9 156 59.6
PRCOL_00006144 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 9.9e-38 161.4 262 39.7
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 1.0e-34 151.4 121 66.9
HPP92_015692 Vanilla planifolia HOM05D006189 ORTHO05D007765 7.4e-33 145.2 97 71.1
TPR.G8023 Trifolium pratense HOM05D006189 ORTHO05D007765 2.5e-17 93.6 73 63.0
PRCOL_00006510 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 3.7e-16 89.7 267 29.6
MCO09G279 Micromonas commoda HOM05D006189 ORTHO05D007765 7.7e-14 82.0 211 28.0
MCO08G164 Micromonas commoda HOM05D006189 ORTHO05D007765 1.6e-11 74.3 268 26.5
Cre12.g549852 Chlamydomonas reinhardtii HOM05D006189 ORTHO05D007765 1.0e-10 71.6 272 27.6
PRCOL_00004206 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 1.0e-10 71.6 246 27.6
CDE02G4223 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 1.1e-09 68.2 56 55.4
Cfa026914 Carpinus fangiana HOM05D000326 ORTHO05D125651 3.7e-08 63.2 151 31.8
TAR381G0334 Trochodendron aralioides HOM05D000904 ORTHO05D005281 3.7e-08 63.2 204 28.9
Eucgr.D01838 Eucalyptus grandis HOM05D000252 ORTHO05D000307 5.3e-07 59.3 157 27.4
Cre16.g675450 Chlamydomonas reinhardtii HOM05D006189 ORTHO05D007765 6.9e-07 58.9 264 26.1
QL12p032726 Quercus lobata HOM05D000252 ORTHO05D000307 6.9e-07 58.9 151 27.8
Sed0012472 Sechium edule HOM05D000904 ORTHO05D005281 6.9e-07 58.9 197 26.9
SMO049G0001 Selaginella moellendorffii HOM05D000402 ORTHO05D000263 6.9e-07 58.9 175 27.4
Glyma.05G108500 Glycine max HOM05D002673 ORTHO05D002766 9.1e-07 58.5 198 23.7
TAR376G0676 Trochodendron aralioides HOM05D002673 ORTHO05D002766 9.1e-07 58.5 249 23.7
ClCG11G004250 Citrullus lanatus HOM05D002673 ORTHO05D002766 1.2e-06 58.2 163 28.2
Ciclev10002114m.g Citrus clementina HOM05D000904 ORTHO05D005281 1.2e-06 58.2 207 27.5
Aa31LG3G7510 Aethionema arabicum HOM05D000402 ORTHO05D000263 1.5e-06 57.8 159 28.9
SMO200G0217 Selaginella moellendorffii HOM05D000402 ORTHO05D000263 2.0e-06 57.4 159 28.9
Aa31LG11G1660 Aethionema arabicum HOM05D000402 ORTHO05D000263 2.6e-06 57.0 163 30.1
Aa31LG9G10820 Aethionema arabicum HOM05D000252 ORTHO05D000307 2.6e-06 57.0 146 28.8
Carub.0006s3035 Capsella rubella HOM05D000252 ORTHO05D000307 2.6e-06 57.0 146 28.8
CsaV3_2G014920 Cucumis sativus L. HOM05D002673 ORTHO05D002766 3.4e-06 56.6 199 24.6
Manes.07G028700 Manihot esculenta HOM05D000904 ORTHO05D005281 3.4e-06 56.6 196 26.5
CBR_g38759 Chara braunii HOM05D000402 ORTHO05D000263 4.5e-06 56.2 170 28.8
Migut.B00727 Erythranthe guttata HOM05D000904 ORTHO05D005281 4.5e-06 56.2 258 26.7
Nitab4.5_0000349g0120 Nicotiana tabacum HOM05D000252 ORTHO05D000307 4.5e-06 56.2 102 34.3
Sabra06G0063500 Salix brachista HOM05D000252 ORTHO05D000307 4.5e-06 56.2 117 33.3
TWI75G1562 Tripterygium wilfordii HOM05D000252 ORTHO05D000307 4.5e-06 56.2 169 26.6
CANSAT01G3180 Cannabis sativa HOM05D002673 ORTHO05D002766 5.9e-06 55.8 209 25.4
CARHR010440 Cardamine hirsuta HOM05D000904 ORTHO05D005281 5.9e-06 55.8 214 26.2
CARHR230760 Cardamine hirsuta HOM05D000252 ORTHO05D000307 5.9e-06 55.8 146 28.8
Cfa026333 Carpinus fangiana HOM05D006189 ORTHO05D007765 5.9e-06 55.8 255 23.5
Gohir.D03G150500 Gossypium hirsutum HOM05D000252 ORTHO05D000307 5.9e-06 55.8 96 35.4
MCO02G010 Micromonas commoda HOM05D006189 ORTHO05D007765 5.9e-06 55.8 269 24.9
arahy.Tifrunner.gnm1.ann1.6UI7FH Arachis hypogaea HOM05D000402 ORTHO05D000263 7.7e-06 55.5 167 28.1
arahy.Tifrunner.gnm1.ann1.S9I76Q Arachis hypogaea HOM05D000402 ORTHO05D000263 7.7e-06 55.5 167 28.1
DCAR_016331 Daucus carota HOM05D000402 ORTHO05D000263 7.7e-06 55.5 178 25.8
Thhalv10004629m.g Eutrema salsugineum HOM05D000402 ORTHO05D000263 7.7e-06 55.5 161 29.8
Thhalv10028811m.g Eutrema salsugineum HOM05D000252 ORTHO05D000307 7.7e-06 55.5 146 28.8
Sp1g08910 Schrenkiella parvula HOM05D000904 ORTHO05D005281 7.7e-06 55.5 195 26.2


User provided reference genes

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