Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 3.4e-269 931.0 451 100.0
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 1.5e-136 490.3 395 62.3
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 6.5e-135 485.0 396 62.6
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 6.5e-135 485.0 405 61.2
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 1.9e-134 483.4 396 62.1
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 9.3e-134 481.1 396 61.9
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 2.7e-133 479.6 396 61.1
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 3.5e-133 479.2 396 61.1
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 3.5e-133 479.2 396 61.4
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 1.3e-132 477.2 417 60.2
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.8e-132 476.9 396 61.9
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 5.1e-132 475.3 405 60.2
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 6.7e-132 474.9 396 60.6
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 1.1e-131 474.2 396 60.6
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.9e-131 473.4 396 60.6
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 9.7e-131 471.1 396 60.1
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 2.8e-130 469.5 396 60.6
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 4.8e-130 468.8 396 61.4
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 6.3e-130 468.4 396 59.1
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 6.3e-130 468.4 396 60.6
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 1.8e-129 466.8 410 57.3
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 1.8e-129 466.8 395 59.0
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 2.4e-129 466.5 396 61.1
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 2.4e-129 466.5 395 60.0
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 2.4e-129 466.5 397 59.9
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 3.1e-129 466.1 396 59.6
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 4.1e-129 465.7 395 59.0
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 6.9e-129 464.9 395 58.7
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 6.9e-129 464.9 395 59.2
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 9.0e-129 464.5 397 59.7
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.2e-128 464.2 396 58.3
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 2.0e-128 463.4 396 60.4
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.0e-128 463.4 436 56.9
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 2.0e-128 463.4 397 59.2
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 5.9e-128 461.8 395 59.5
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 5.9e-128 461.8 395 58.0
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.0e-127 461.1 395 57.7
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 1.0e-127 461.1 396 59.1
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.3e-127 460.7 396 57.8
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.0e-127 458.8 396 61.4
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 8.5e-127 458.0 395 58.2
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.4e-126 457.2 396 57.6
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 1.9e-126 456.8 395 57.5
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 2.5e-126 456.4 396 56.8
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 5.5e-126 455.3 395 59.0
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 7.2e-126 454.9 397 58.7
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 9.4e-126 454.5 395 59.0
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.2e-125 454.1 396 58.6
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.2e-125 454.1 396 58.6
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 2.1e-125 453.4 395 58.0
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 3.6e-125 452.6 396 58.8
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 1.8e-124 450.3 395 57.7
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 5.1e-124 448.7 397 58.2
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 6.7e-124 448.4 396 56.6
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 8.8e-124 448.0 397 58.2
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 8.8e-124 448.0 394 57.9
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 1.1e-123 447.6 397 58.2
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 3.3e-123 446.0 398 58.8
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 3.3e-123 446.0 395 57.2
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 4.3e-123 445.7 396 56.1
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 5.7e-123 445.3 396 57.6
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 7.4e-123 444.9 413 58.1
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 7.4e-123 444.9 395 57.2
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 2.2e-122 443.4 395 57.2
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.8e-122 443.0 396 58.3
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 2.8e-122 443.0 396 57.1
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 4.8e-122 442.2 377 59.9
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 1.4e-121 440.7 396 56.8
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 1.4e-121 440.7 396 56.8
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 1.8e-121 440.3 396 55.3
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 3.1e-121 439.5 399 56.6
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 2.6e-120 436.4 396 57.1
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.6e-120 436.4 377 59.2
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 4.5e-120 435.6 396 55.3
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 5.9e-120 435.3 397 58.2
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 1.3e-119 434.1 396 54.5
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.3e-119 434.1 422 55.0
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.7e-119 433.7 396 57.1
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 5.0e-119 432.2 395 55.9
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 5.0e-119 432.2 395 55.9
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 5.0e-119 432.2 396 54.5
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.1e-118 431.0 395 54.4
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 2.5e-118 429.9 397 55.2
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 2.5e-118 429.9 395 55.4
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 4.2e-118 429.1 395 55.4
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.6e-117 426.0 397 54.4
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 3.6e-117 426.0 396 56.1
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 6.1e-117 425.2 376 57.4
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 6.1e-117 425.2 452 49.8
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 8.8e-116 421.4 377 56.8
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 4.8e-114 415.6 395 52.9
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 8.2e-114 414.8 395 54.4
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 1.8e-113 413.7 395 54.2
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.2e-112 411.0 396 52.3
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 1.2e-112 411.0 395 54.2
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.0e-111 407.9 397 53.4
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 6.5e-111 405.2 394 54.6
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 4.2e-110 402.5 397 52.1
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.4e-108 397.5 349 57.6
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 3.1e-105 386.3 395 49.4
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 1.2e-104 384.4 353 56.4
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 2.0e-104 383.6 355 55.8
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 2.0e-104 383.6 355 55.8
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 6.5e-103 378.6 395 47.6
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 8.0e-101 371.7 192 89.6
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 5.2e-100 369.0 346 54.6
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 4.4e-99 365.9 376 51.6
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 2.7e-96 356.7 307 56.7
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 1.3e-95 354.4 365 51.8
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 1.2e-93 347.8 395 44.6
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 1.6e-88 330.9 187 81.3
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 3.0e-84 316.6 322 52.8
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 1.2e-80 304.7 166 80.1
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.1e-77 293.9 397 43.8
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 4.7e-77 292.7 162 77.2
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 3.6e-69 266.5 211 60.2
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.4e-65 252.7 144 79.9
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 3.0e-63 246.9 397 34.0
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 5.1e-63 246.1 397 34.0
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 3.5e-56 223.4 288 42.0
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 2.1e-53 214.2 395 33.2
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 8.1e-53 212.2 282 44.3
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 1.8e-52 211.1 263 44.9
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.7e-50 204.5 113 75.2
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 9.0e-36 155.6 423 26.2
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.2e-35 155.2 94 73.4
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.2e-35 155.2 121 62.0
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 2.3e-31 141.0 70 90.0
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 8.4e-26 122.5 105 59.0
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 4.2e-25 120.2 81 63.0
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.2e-24 118.6 69 72.5
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 1.8e-23 114.8 102 59.8
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 1.3e-21 108.6 72 72.2
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 6.7e-15 86.3 57 73.7
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.3e-14 83.6 44 81.8
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 4.8e-13 80.1 50 72.0
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.4e-12 78.6 71 56.3
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 2.4e-12 77.8 128 35.9
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 3.1e-12 77.4 46 73.9
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 5.3e-12 76.6 70 55.7
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 2.6e-11 74.3 46 71.7
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 3.2e-09 67.4 35 80.0
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 9.4e-09 65.9 34 70.6
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.6e-08 65.1 42 61.9
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 1.0e-07 62.4 35 65.7


User provided reference genes

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