Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 3924.0 2104 100.0
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2890.5 2168 73.8
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 2738.4 2105 72.1
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 2736.4 2074 72.7
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2121.7 1901 61.7
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2038.1 2234 54.5
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1997.6 2224 54.9
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 1954.5 2204 53.5
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 1939.9 2226 52.9
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1938.7 2183 52.1
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 1912.1 2223 51.5
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 1909.0 2179 51.6
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1901.3 2212 50.8
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 1888.6 2173 52.9
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1881.3 2242 50.0
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1877.4 2241 50.1
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 1871.3 2205 51.7
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 1866.7 2231 49.7
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 1864.7 2190 50.8
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 1860.5 2230 51.0
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1860.5 2251 49.4
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1856.3 2211 49.8
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 1842.4 2147 51.0
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 1835.5 2230 49.5
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 1833.2 2209 51.3
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1832.8 2213 50.4
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1823.1 2176 51.6
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1822.0 2220 50.6
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1822.0 2292 49.5
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 1817.0 2211 49.7
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 1807.0 2077 51.4
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 1805.8 2234 51.0
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1803.5 2215 49.5
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1802.7 1716 58.0
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 1792.3 2222 50.3
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1791.2 2216 50.1
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 1790.4 2220 50.5
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 1790.0 2190 49.7
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 1790.0 2238 48.8
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1787.3 2214 50.2
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 1783.5 2298 49.5
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 1779.2 2190 49.6
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 1773.4 2223 49.3
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 1740.7 2250 48.9
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 1738.8 2226 49.0
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1736.1 2260 48.4
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1735.7 2199 48.9
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1733.8 2223 48.0
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 1729.1 2213 49.3
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1721.1 2222 48.6
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 1714.5 2265 47.8
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1712.2 2259 47.7
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1710.3 2200 48.0
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1692.9 2235 47.5
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1691.0 2197 47.9
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1686.0 2242 47.5
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1674.4 2232 48.2
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1672.9 2087 48.2
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1661.4 2204 48.1
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 1653.3 2205 47.8
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1649.8 2160 48.3
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1644.0 2190 47.6
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 1635.9 2113 48.3
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1634.4 2097 48.9
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1619.8 2207 46.8
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1616.7 2055 48.7
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1616.7 2232 47.0
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1606.7 2199 46.5
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1605.5 2234 47.0
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1603.6 2180 47.0
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1602.0 2231 47.2
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1594.3 2201 46.2
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1584.3 2231 46.3
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1583.5 2241 46.5
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1577.0 2187 46.1
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1576.6 2218 46.3
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1573.5 2185 46.2
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 1571.6 2257 45.4
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1565.8 2208 45.7
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1563.1 2203 45.8
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1560.8 2032 47.0
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1555.4 2160 46.5
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1547.7 2043 46.9
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1546.2 2206 45.5
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1464.5 2098 44.0
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1425.2 1391 55.3
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1421.4 1391 55.2
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1407.5 1393 55.2
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1371.7 1426 54.3
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1301.2 2110 41.8
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1223.0 2242 39.6
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1193.7 1194 53.4
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1097.8 1429 49.0
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1075.1 2165 37.0
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 8.9e-296 1021.5 1473 45.8
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 7.9e-260 902.1 1332 45.0
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 3.7e-233 813.5 816 53.6
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 2.8e-225 787.3 1247 43.9
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 7.0e-224 782.7 1113 42.3
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 1.6e-220 771.5 1262 42.7
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 3.0e-219 767.3 1351 42.0
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 2.3e-211 741.1 1260 39.7
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.3e-155 553.9 968 40.0
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 5.3e-155 553.9 2187 27.3
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.4e-139 501.9 481 55.7
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 7.2e-128 463.8 836 47.7
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.6e-127 462.6 836 47.7
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.4e-126 459.5 1087 36.1
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 1.9e-120 439.1 921 40.8
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 8.8e-118 430.3 784 44.6
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 5.3e-115 421.0 1650 26.2
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 4.4e-109 401.4 1027 36.5
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 7.7e-106 390.6 861 36.0
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 2.0e-101 375.9 426 49.3
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 5.9e-98 364.4 1392 26.0
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 5.2e-94 351.3 604 38.6
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 7.0e-91 340.9 340 56.5
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 1.5e-85 323.2 299 60.2
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.1e-78 298.9 390 45.1
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.4e-69 268.5 164 82.3
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 3.0e-65 255.8 1872 22.2
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.4e-61 242.3 153 77.8
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 3.8e-60 238.8 339 40.7
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 3.6e-55 222.2 335 37.6
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 4.8e-55 221.9 276 44.9
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 1.9e-43 183.3 137 64.2
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.1e-42 179.9 112 82.1
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 6.7e-41 174.9 188 65.4
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 1.1e-40 174.1 211 46.4
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 2.5e-35 156.4 335 32.5
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 3.5e-34 152.5 410 39.5
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 5.3e-30 138.7 236 42.8
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 9.0e-30 137.9 459 37.5
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 1.5e-29 137.1 117 55.6
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 2.6e-29 136.3 425 32.2
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.0e-28 134.4 696 30.3
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 2.9e-28 132.9 203 39.4
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.3e-25 123.2 534 27.2
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 4.8e-23 115.5 179 45.3
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 4.8e-23 115.5 68 77.9
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.5e-21 109.0 329 29.5
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.4e-17 97.4 182 34.6
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 1.4e-14 87.4 127 48.0
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 9.1e-14 84.7 45 95.6
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 5.9e-13 82.0 89 50.6
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 5.9e-13 82.0 61 67.2
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 2.9e-12 79.7 133 32.3
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 3.6e-10 72.8 203 31.0
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 1.4e-06 60.8 95 45.3


User provided reference genes

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