Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.7e-93 345.9 159 100.0
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 1.0e-90 336.7 159 97.5
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 1.0e-90 336.7 159 97.5
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 1.0e-90 336.7 159 96.9
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.3e-90 336.3 159 96.2
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 2.2e-90 335.5 159 96.2
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.2e-90 335.5 159 95.6
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.2e-90 335.5 159 96.2
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.2e-90 335.5 159 96.2
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 2.2e-90 335.5 159 96.2
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 5.0e-90 334.3 159 95.6
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 6.5e-90 334.0 159 95.6
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 1.9e-89 332.4 159 95.6
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 1.9e-89 332.4 159 95.0
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 3.2e-89 331.6 159 93.7
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 5.5e-89 330.9 159 95.0
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 93.7
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 93.7
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.2e-88 329.7 159 95.0
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 2.1e-88 328.9 159 93.1
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 2.7e-88 328.6 160 94.4
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 4.7e-88 327.8 159 93.1
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.7
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.7
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.7
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.7
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.7
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.7
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.7
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.7
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.7
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.7
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 6.1e-88 327.4 158 94.3
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 1.0e-87 326.6 159 93.7
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 5.1e-87 324.3 159 93.1
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 6.7e-87 323.9 159 93.1
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 6.7e-87 323.9 157 93.6
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 6.7e-87 323.9 157 93.6
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 6.7e-87 323.9 157 93.6
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 1.5e-86 322.8 159 89.3
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 2.0e-86 322.4 159 92.5
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 92.5
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 91.8
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 5.7e-86 320.9 159 91.2
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 7.4e-86 320.5 159 88.7
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 2.8e-85 318.5 159 91.2
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 2.8e-85 318.5 159 91.8
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 91.2
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 90.6
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 2.4e-84 315.5 159 89.9
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 4.1e-84 314.7 159 91.2
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 7.0e-84 313.9 157 92.4
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 1.2e-83 313.2 158 89.9
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 7.7e-83 310.5 159 89.3
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.0e-82 310.1 142 100.0
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 1.7e-82 309.3 154 91.6
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 2.9e-82 308.5 159 90.6
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 2.9e-82 308.5 158 88.0
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 2.5e-81 305.4 151 91.4
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 6.1e-80 300.8 144 93.8
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.4e-79 299.7 143 96.5
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 5.7e-78 294.3 144 92.4
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 5.7e-78 294.3 144 92.4
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 5.7e-78 294.3 144 92.4
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 2.8e-77 292.0 159 84.3
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 2.0e-75 285.8 159 84.3
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 2.9e-74 282.0 139 92.1
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.5e-73 279.6 159 83.6
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.9e-73 279.3 159 80.5
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 9.4e-73 276.9 149 85.9
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.6e-72 276.2 139 90.6
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 4.8e-69 264.6 134 91.0
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-68 263.1 159 78.6
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 2.4e-68 262.3 144 85.4
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 5.4e-68 261.2 159 78.0
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.5e-67 258.5 134 89.6
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.2e-66 255.8 146 83.6
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 2.9e-66 255.4 163 75.5
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 1.4e-63 246.5 159 74.8
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 6.8e-63 244.2 117 96.6
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.0e-62 242.7 132 84.8
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.7e-58 229.6 139 76.3
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 3.8e-58 228.4 136 81.6
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 1.5e-57 226.5 135 78.5
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 2.8e-56 222.2 158 70.9
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 6.1e-56 221.1 112 90.2
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 1.8e-55 219.5 105 97.1
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.6e-54 215.7 134 79.1
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 7.5e-54 214.2 159 65.4
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 7.5e-54 214.2 159 65.4
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 7.5e-54 214.2 159 65.4
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 9.8e-54 213.8 107 89.7
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 9.8e-54 213.8 107 89.7
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 1.7e-53 213.0 109 90.8
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 3.2e-52 208.8 100 94.0
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 3.2e-52 208.8 100 94.0
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 3.2e-52 208.8 100 94.0
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.2e-51 206.8 101 92.1
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 3.5e-51 205.3 102 90.2
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 5.9e-51 204.5 112 85.7
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 2.3e-50 202.6 162 66.7
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 1.1e-49 200.3 95 96.8
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 2.5e-49 199.1 100 90.0
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 5.6e-49 198.0 101 89.1
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 2.8e-48 195.7 110 84.5
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.8e-48 195.7 109 86.2
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 6.8e-47 191.0 150 71.3
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.4e-46 188.3 109 81.7
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 4.4e-46 188.3 111 79.3
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 9.8e-46 187.2 92 93.5
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 2.2e-45 186.0 115 74.8
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.1e-44 183.7 108 78.7
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 7.8e-43 177.6 91 90.1
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 1.3e-42 176.8 83 97.6
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 1.7e-42 176.4 100 84.0
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 3.0e-42 175.6 84 94.0
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 3.9e-42 175.3 90 86.7
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 3.9e-42 175.3 83 96.4
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 6.6e-42 174.5 83 96.4
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 4.3e-41 171.8 83 94.0
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 1.2e-40 170.2 86 88.4
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 4.7e-40 168.3 83 91.6
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 2.6e-38 162.5 82 92.7
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.1e-36 157.1 92 78.3
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 1.6e-35 153.3 78 88.5
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.0e-34 150.6 84 83.3
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 1.7e-34 149.8 72 95.8
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.0e-34 149.1 83 83.1
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 8.6e-34 147.5 78 87.2
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 8.6e-34 147.5 83 81.9
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 7.3e-33 144.4 68 97.1
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 6.8e-31 137.9 124 59.7
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 2.6e-30 136.0 65 93.8
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.2e-28 129.0 59 96.6
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.6e-27 126.7 57 100.0
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 8.6e-26 120.9 59 91.5
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 4.7e-24 115.2 55 90.9
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 4.7e-24 115.2 58 87.9
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.4e-22 109.0 69 72.5
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 1.3e-21 107.1 53 90.6
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 1.3e-21 107.1 54 88.9
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 2.9e-21 105.9 99 54.5
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 8.4e-21 104.4 50 94.0
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 2.1e-19 99.8 53 83.0
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 8.7e-18 94.4 43 93.0
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 1.6e-16 90.1 86 48.8
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 6.2e-16 88.2 41 92.7
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 2.4e-15 86.3 48 85.4
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 1.7e-13 80.1 39 89.7
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 2.1e-11 73.2 53 66.0
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 5.1e-10 68.6 32 93.8
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 1.5e-09 67.0 68 48.5
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 8.1e-08 61.2 60 56.7
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 2.4e-07 59.7 91 31.9
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 2.4e-07 59.7 88 33.0
Hund10567 Selenicereus undatus HOM05D001033 ORTHO05D004888 5.3e-07 58.5 38 65.8
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 7.6e-06 54.7 115 28.7
FvH4_3g38401 Fragaria vesca HOM05D001033 ORTHO05D004888 7.6e-06 54.7 27 88.9
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 9.9e-06 54.3 96 35.4
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 9.9e-06 54.3 96 35.4


User provided reference genes

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