Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 0.0e+00 1089.7 553 100.0
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.1e-252 875.5 551 80.9
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 3.6e-252 874.8 551 81.5
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 4.8e-249 864.4 571 78.6
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.0e-231 805.8 553 75.8
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 8.6e-214 747.3 447 83.2
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 1.2e-212 743.4 446 83.0
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 8.0e-212 740.7 475 79.4
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 1.0e-211 740.3 440 83.6
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 1.0e-211 740.3 438 83.3
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 6.8e-211 737.6 448 81.5
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.2e-210 736.9 440 82.7
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.5e-210 736.5 444 81.3
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.5e-210 736.5 438 83.8
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 3.4e-210 735.3 446 81.2
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.3e-209 733.4 451 80.9
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 3.7e-209 731.9 439 82.2
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 4.9e-209 731.5 441 83.0
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 4.9e-209 731.5 440 83.0
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 6.3e-209 731.1 440 82.5
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.1e-208 730.3 439 81.8
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.2e-208 728.8 478 77.0
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 3.2e-208 728.8 481 76.9
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 5.4e-208 728.0 439 80.9
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 7.0e-208 727.6 458 78.6
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 9.2e-208 727.2 448 80.8
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 1.2e-207 726.9 478 76.6
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 1.2e-207 726.9 443 80.8
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.6e-207 726.5 455 80.0
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 4.5e-207 724.9 437 81.5
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 5.9e-207 724.5 443 81.9
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.3e-206 723.4 441 81.6
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.3e-206 722.6 441 81.9
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 3.9e-206 721.8 478 76.8
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 5.0e-206 721.5 443 81.9
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 6.6e-206 721.1 441 79.8
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 8.6e-206 720.7 439 80.2
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.5e-205 719.9 435 82.1
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.5e-205 719.9 447 79.9
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 1.5e-205 719.9 440 80.2
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 1.9e-205 719.5 529 70.7
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.9e-205 719.5 447 79.9
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 2.8e-204 715.7 449 80.2
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.8e-204 715.7 438 79.9
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 8.0e-204 714.1 437 80.8
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 8.0e-204 714.1 435 80.5
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 1.0e-203 713.8 440 79.1
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.4e-203 713.4 430 81.6
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 5.2e-203 711.4 438 79.7
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 8.9e-203 710.7 438 79.5
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 1.2e-202 710.3 438 79.5
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 1.5e-202 709.9 439 79.7
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.5e-202 709.9 441 80.3
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 2.0e-202 709.5 438 80.6
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 3.4e-202 708.8 434 81.3
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.4e-202 708.8 428 82.0
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 4.4e-202 708.4 444 78.6
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 5.8e-202 708.0 471 76.0
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 7.5e-202 707.6 439 79.7
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 9.8e-202 707.2 428 82.0
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.3e-201 706.8 429 80.7
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.3e-201 706.8 429 80.7
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.3e-201 706.8 437 79.9
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.7e-201 706.4 430 81.4
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 3.7e-201 705.3 438 79.2
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.4e-201 704.5 439 79.7
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 6.4e-201 704.5 454 77.1
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.9e-200 703.0 458 75.1
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 2.4e-200 702.6 439 79.7
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 4.1e-200 701.8 422 83.2
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 5.4e-200 701.4 428 80.4
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 5.4e-200 701.4 485 72.6
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.2e-199 700.3 439 79.7
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.2e-199 700.3 439 78.1
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 2.7e-199 699.1 439 79.0
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 2.7e-199 699.1 429 81.6
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 3.5e-199 698.7 438 78.8
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 3.5e-199 698.7 442 79.0
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 6.0e-199 698.0 439 79.5
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 1.0e-198 697.2 437 77.8
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 1.0e-198 697.2 439 78.4
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.7e-198 696.4 422 82.0
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 2.3e-198 696.0 442 78.1
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 3.0e-198 695.7 428 79.7
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 3.9e-198 695.3 444 77.7
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 8.6e-198 694.1 433 78.3
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.5e-197 693.3 491 72.9
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 4.3e-197 691.8 428 79.4
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 4.3e-197 691.8 428 79.7
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 7.3e-197 691.0 464 75.2
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 3.6e-196 688.7 453 76.4
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 4.7e-196 688.3 428 79.7
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.1e-195 687.2 426 80.3
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 1.1e-195 687.2 444 76.6
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 3.1e-195 685.6 426 79.8
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 3.1e-195 685.6 426 79.8
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 3.1e-195 685.6 437 76.4
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 5.2e-195 684.9 433 77.6
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 2.6e-194 682.6 458 74.5
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 7.5e-194 681.0 444 76.1
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 9.8e-194 680.6 430 77.0
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.2e-191 673.7 426 77.5
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 1.6e-191 673.3 467 72.2
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 2.1e-191 672.9 426 77.9
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.3e-190 670.2 439 73.8
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 3.3e-189 665.6 450 73.6
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 7.3e-189 664.5 450 73.6
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.6e-188 663.3 507 66.9
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.4e-187 660.2 462 74.0
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.9e-185 652.5 439 75.6
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.1e-183 646.4 399 81.7
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 9.6e-181 637.5 476 70.2
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.2e-180 637.1 486 66.5
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.5e-178 630.2 393 79.6
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 1.3e-177 627.1 480 66.0
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 1.7e-177 626.7 426 70.9
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.4e-176 622.9 438 69.4
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 7.1e-168 594.7 437 66.8
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 8.1e-164 581.3 366 77.6
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 7.9e-151 538.1 326 81.6
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.4e-147 526.6 307 86.0
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 3.2e-144 516.2 434 60.1
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 2.1e-143 513.5 315 81.3
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.0e-142 509.6 297 85.5
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 2.5e-141 506.5 429 61.1
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.1e-139 501.1 465 55.3
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.2e-137 493.4 328 75.6
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 2.9e-137 493.0 331 75.5
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.9e-134 482.6 297 82.5
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 9.7e-125 451.4 297 77.4
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 2.0e-122 443.7 277 79.1
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.1e-119 433.7 301 75.1
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 5.7e-117 425.6 424 53.8
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.1e-107 394.8 428 47.7
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 4.3e-96 356.3 241 75.9
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.6e-93 347.1 438 43.4
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.1e-74 284.3 175 76.0
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.5e-72 277.3 358 42.7
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.4e-67 260.8 229 63.8
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.8e-52 210.3 135 74.8
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.4e-51 208.4 177 65.0
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 7.6e-45 186.0 180 52.8
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 1.4e-43 181.8 125 74.4
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 3.9e-41 173.7 120 68.3
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.7e-41 172.9 131 65.6
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 2.1e-31 141.4 96 67.7
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 6.9e-30 136.3 90 77.8
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 8.5e-28 129.4 85 70.6
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 8.5e-28 129.4 85 70.6
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.1e-27 129.0 113 60.2
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 1.2e-26 125.6 80 71.2
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 3.6e-26 124.0 80 71.2
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 1.3e-25 122.1 80 70.0
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 5.1e-25 120.2 77 70.1
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 6.3e-23 113.2 78 67.9
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 8.5e-20 102.8 71 69.0
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 8.5e-20 102.8 71 69.0
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.9e-19 101.7 71 67.6
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 5.5e-19 100.1 259 31.3
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 2.7e-18 97.8 82 64.6
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 8.8e-17 92.8 57 78.9


User provided reference genes

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